Ggra10192.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10192.t1
Unique NameGgra10192.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:56379..57365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ253CT
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
KEGG koko:K09422
Evalue1.65e-33
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10192Ggra10192Gracilaria gracilis GNS1m malegenetig00000016_pilon 56379..57365 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10192.t1.stop1Ggra10192.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 56379..56381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10192.t1.CDS1Ggra10192.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 56379..57365 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10192.t1.exon1Ggra10192.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 56379..57365 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10192.t1.start1Ggra10192.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 57363..57365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10192.t1Ggra10192.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 56379..57365 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10192.t1 ID=Ggra10192.t1|Name=Ggra10192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=329bp
MPPLVTSSALPLPPPPQIADVPARYHKMSVQNLVCPPLPTMPPPPVPSHH
VSFSSELHFSSRTSRYSQQLPQITPLPSSSPTAPPPPPMLSPTLKALPIS
HPLPPLLPHGLSSHTSLYRNQDYAKQHAPTQPQVQQQSRAQLRHFSSHSC
VADRPISVAMEPRNSCSEDSTGARATPALGVPEPKAKRPWTEQEDRLLRS
LVEQLGQGLWASIAAQIPGRSGKQVRERWLNHLSPNVTKRPWSNEEDDII
IENHRRFGNCWSRIAKLLEGRSDNSVKNRFYTTLKRRIHTSRTMNRTFSG
KRNRSQQTNSDDSSELPHQKLKQNRVWE*
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spliced messenger RNA

>Ggra10192.t1 ID=Ggra10192.t1|Name=Ggra10192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000016_pilon:56379..57365- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCTCTCGTGACATCTTCCGCTCTGCCGCTGCCGCCTCCGCCTCA
AATCGCCGACGTACCGGCGCGGTATCACAAGATGTCCGTGCAAAATCTCG
TGTGTCCGCCACTTCCGACCATGCCACCGCCGCCCGTACCGTCACATCAC
GTGTCTTTTTCGTCAGAGCTTCACTTTTCCTCACGCACTTCGCGCTACAG
CCAACAGCTGCCTCAAATCACGCCCCTTCCTTCTTCATCGCCAACAGCGC
CACCTCCGCCGCCGATGCTCTCGCCAACGCTGAAGGCACTGCCCATTTCG
CACCCTCTGCCACCTCTTCTACCGCACGGTCTGTCATCGCACACCTCCTT
GTATCGAAACCAGGACTATGCAAAACAGCACGCGCCCACGCAACCGCAAG
TTCAACAACAATCGCGTGCACAGCTTCGTCACTTTTCGTCGCACTCGTGT
GTAGCAGATCGGCCAATTAGCGTTGCAATGGAGCCGCGCAATTCGTGTAG
CGAGGATTCGACAGGCGCTCGAGCGACGCCCGCGTTAGGTGTGCCAGAGC
CCAAGGCGAAGCGACCGTGGACTGAGCAAGAAGATCGGTTGCTTCGCTCC
CTCGTAGAACAGCTCGGCCAGGGACTGTGGGCAAGCATCGCAGCACAGAT
CCCTGGCCGCAGTGGCAAGCAGGTTCGAGAAAGATGGTTGAATCATCTGT
CTCCCAACGTGACGAAGCGTCCCTGGTCAAACGAAGAAGATGATATCATC
ATCGAAAACCATCGGCGGTTCGGAAACTGTTGGAGTCGGATCGCGAAACT
TCTTGAAGGGCGGAGCGATAATTCGGTCAAGAACAGATTCTATACCACGC
TGAAGAGACGGATTCATACTAGTCGGACAATGAATAGGACGTTCTCTGGG
AAAAGGAATCGGTCACAACAAACAAACTCAGACGATAGTTCTGAGCTTCC
CCATCAGAAGCTAAAACAAAATCGAGTTTGGGAGTGA
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protein sequence of Ggra10192.t1

>Ggra10192.t1 ID=Ggra10192.t1|Name=Ggra10192.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=329bp
MPPLVTSSALPLPPPPQIADVPARYHKMSVQNLVCPPLPTMPPPPVPSHH
VSFSSELHFSSRTSRYSQQLPQITPLPSSSPTAPPPPPMLSPTLKALPIS
HPLPPLLPHGLSSHTSLYRNQDYAKQHAPTQPQVQQQSRAQLRHFSSHSC
VADRPISVAMEPRNSCSEDSTGARATPALGVPEPKAKRPWTEQEDRLLRS
LVEQLGQGLWASIAAQIPGRSGKQVRERWLNHLSPNVTKRPWSNEEDDII
IENHRRFGNCWSRIAKLLEGRSDNSVKNRFYTTLKRRIHTSRTMNRTFSG
KRNRSQQTNSDDSSELPHQKLKQNRVWE*
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mRNA from alignment at tig00000016_pilon:56379..57365-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10192.t1 ID=Ggra10192.t1|Name=Ggra10192.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000016_pilon:56379..57365- (Gracilaria gracilis GNS1m male)
ATGCCGCCTCTCGTGACATCTTCCGCTCTGCCGCTGCCGCCTCCGCCTCA
AATCGCCGACGTACCGGCGCGGTATCACAAGATGTCCGTGCAAAATCTCG
TGTGTCCGCCACTTCCGACCATGCCACCGCCGCCCGTACCGTCACATCAC
GTGTCTTTTTCGTCAGAGCTTCACTTTTCCTCACGCACTTCGCGCTACAG
CCAACAGCTGCCTCAAATCACGCCCCTTCCTTCTTCATCGCCAACAGCGC
CACCTCCGCCGCCGATGCTCTCGCCAACGCTGAAGGCACTGCCCATTTCG
CACCCTCTGCCACCTCTTCTACCGCACGGTCTGTCATCGCACACCTCCTT
GTATCGAAACCAGGACTATGCAAAACAGCACGCGCCCACGCAACCGCAAG
TTCAACAACAATCGCGTGCACAGCTTCGTCACTTTTCGTCGCACTCGTGT
GTAGCAGATCGGCCAATTAGCGTTGCAATGGAGCCGCGCAATTCGTGTAG
CGAGGATTCGACAGGCGCTCGAGCGACGCCCGCGTTAGGTGTGCCAGAGC
CCAAGGCGAAGCGACCGTGGACTGAGCAAGAAGATCGGTTGCTTCGCTCC
CTCGTAGAACAGCTCGGCCAGGGACTGTGGGCAAGCATCGCAGCACAGAT
CCCTGGCCGCAGTGGCAAGCAGGTTCGAGAAAGATGGTTGAATCATCTGT
CTCCCAACGTGACGAAGCGTCCCTGGTCAAACGAAGAAGATGATATCATC
ATCGAAAACCATCGGCGGTTCGGAAACTGTTGGAGTCGGATCGCGAAACT
TCTTGAAGGGCGGAGCGATAATTCGGTCAAGAACAGATTCTATACCACGC
TGAAGAGACGGATTCATACTAGTCGGACAATGAATAGGACGTTCTCTGGG
AAAAGGAATCGGTCACAACAAACAAACTCAGACGATAGTTCTGAGCTTCC
CCATCAGAAGCTAAAACAAAATCGAGTTTGGGAGTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:56379..57365-

>Ggra10192.t1 ID=Ggra10192.t1|Name=Ggra10192.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00000016_pilon:56379..57365- (Gracilaria gracilis GNS1m male)
ATGCCGCCTCTCGTGACATCTTCCGCTCTGCCGCTGCCGCCTCCGCCTCA
AATCGCCGACGTACCGGCGCGGTATCACAAGATGTCCGTGCAAAATCTCG
TGTGTCCGCCACTTCCGACCATGCCACCGCCGCCCGTACCGTCACATCAC
GTGTCTTTTTCGTCAGAGCTTCACTTTTCCTCACGCACTTCGCGCTACAG
CCAACAGCTGCCTCAAATCACGCCCCTTCCTTCTTCATCGCCAACAGCGC
CACCTCCGCCGCCGATGCTCTCGCCAACGCTGAAGGCACTGCCCATTTCG
CACCCTCTGCCACCTCTTCTACCGCACGGTCTGTCATCGCACACCTCCTT
GTATCGAAACCAGGACTATGCAAAACAGCACGCGCCCACGCAACCGCAAG
TTCAACAACAATCGCGTGCACAGCTTCGTCACTTTTCGTCGCACTCGTGT
GTAGCAGATCGGCCAATTAGCGTTGCAATGGAGCCGCGCAATTCGTGTAG
CGAGGATTCGACAGGCGCTCGAGCGACGCCCGCGTTAGGTGTGCCAGAGC
CCAAGGCGAAGCGACCGTGGACTGAGCAAGAAGATCGGTTGCTTCGCTCC
CTCGTAGAACAGCTCGGCCAGGGACTGTGGGCAAGCATCGCAGCACAGAT
CCCTGGCCGCAGTGGCAAGCAGGTTCGAGAAAGATGGTTGAATCATCTGT
CTCCCAACGTGACGAAGCGTCCCTGGTCAAACGAAGAAGATGATATCATC
ATCGAAAACCATCGGCGGTTCGGAAACTGTTGGAGTCGGATCGCGAAACT
TCTTGAAGGGCGGAGCGATAATTCGGTCAAGAACAGATTCTATACCACGC
TGAAGAGACGGATTCATACTAGTCGGACAATGAATAGGACGTTCTCTGGG
AAAAGGAATCGGTCACAACAAACAAACTCAGACGATAGTTCTGAGCTTCC
CCATCAGAAGCTAAAACAAAATCGAGTTTGGGAGTGA
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