Ggra10191.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10191.t1
Unique NameGgra10191.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:53261..54389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10191Ggra10191Gracilaria gracilis GNS1m malegenetig00000016_pilon 53261..54389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10191.t1Ggra10191.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 53261..54389 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10191.t1.stop1Ggra10191.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 53261..53263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10191.t1.CDS1Ggra10191.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 53261..53452 -
Ggra10191.t1.CDS2Ggra10191.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 53580..54389 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10191.t1.exon1Ggra10191.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 53261..53452 -
Ggra10191.t1.exon2Ggra10191.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 53580..54389 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10191.t1.intron1Ggra10191.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 53453..53579 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10191.t1.start1Ggra10191.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 54387..54389 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10191.t1 ID=Ggra10191.t1|Name=Ggra10191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MQPASPARSPSLPPKQQPMRLQPRAPPSTPPHHVSPPPPPPPPPPPLSPL
PHLNALSSGAAAAAARVQDARGGGGGGGGVAAHSRALQHYLQQQPPAAGG
TKGAAVLPRLAADFSLTEADALIASAVGDTCLPCAPFEAHTLLPSYVRNG
ASPSALGHYALRAAAAAAARPYAPLALAHGYVDVARGEHANACGELPLPL
AAAHGDAALQWRSAPRAANKWTCNSCSYQFAYKDHLARHRAFVHEGKSES
KCSHCSKIYVEFKSLRRHINQNHMSISASQCSFFCYWCSFRCTQLRMWRS
HILTAHYGESYAHRISWDTWTSLVDSEQANTAE*
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spliced messenger RNA

>Ggra10191.t1 ID=Ggra10191.t1|Name=Ggra10191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000016_pilon:53261..54389- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCTGCTTCCCCAGCGCGCTCTCCCTCGCTGCCGCCAAAGCAACA
GCCGATGCGGTTGCAACCGCGCGCGCCGCCCTCCACGCCGCCGCACCACG
TCTCGCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCTGTCGCCGCTT
CCGCACCTCAACGCGCTGTCGAGCGGCGCGGCGGCGGCGGCGGCACGCGT
GCAGGACGCGCGCGGCGGCGGCGGCGGCGGCGGCGGCGTTGCGGCGCACA
GCCGCGCGCTTCAGCACTACCTGCAGCAGCAGCCGCCGGCGGCCGGCGGC
ACCAAGGGGGCGGCGGTGCTTCCGCGGCTGGCGGCGGACTTCAGCCTCAC
GGAGGCGGACGCGCTGATCGCCAGCGCGGTGGGCGACACGTGCCTTCCGT
GCGCGCCGTTTGAAGCGCACACGCTGCTGCCAAGCTACGTGCGCAACGGC
GCGTCGCCCAGCGCGCTGGGGCACTACGCGCTGCGCGCGGCGGCGGCGGC
GGCGGCGCGCCCGTACGCGCCGCTGGCGCTGGCGCACGGCTACGTGGACG
TGGCGCGCGGCGAGCACGCGAACGCGTGCGGCGAGCTGCCGCTGCCGCTG
GCGGCGGCGCACGGCGACGCTGCGTTGCAGTGGCGCAGCGCGCCGCGCGC
GGCCAACAAATGGACGTGTAACAGCTGTTCGTACCAGTTTGCTTACAAGG
ACCACCTCGCCAGACACCGCGCGTTCGTGCACGAGGGAAAGAGCGAGAGC
AAATGCAGCCATTGCTCCAAGATCTACGTGGAGTTTAAAAGCCTTCGCCG
ACACATCAACCAAAACCATATGAGCATTTCGGCATCGCAGTGCTCCTTCT
TCTGCTATTGGTGCTCGTTCCGATGCACGCAGCTGCGCATGTGGAGAAGT
CATATCCTGACGGCGCACTACGGCGAGAGCTATGCTCACCGCATTAGCTG
GGACACATGGACAAGTTTGGTTGACTCGGAACAAGCAAACACAGCAGAGT
AA
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protein sequence of Ggra10191.t1

>Ggra10191.t1 ID=Ggra10191.t1|Name=Ggra10191.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MQPASPARSPSLPPKQQPMRLQPRAPPSTPPHHVSPPPPPPPPPPPLSPL
PHLNALSSGAAAAAARVQDARGGGGGGGGVAAHSRALQHYLQQQPPAAGG
TKGAAVLPRLAADFSLTEADALIASAVGDTCLPCAPFEAHTLLPSYVRNG
ASPSALGHYALRAAAAAAARPYAPLALAHGYVDVARGEHANACGELPLPL
AAAHGDAALQWRSAPRAANKWTCNSCSYQFAYKDHLARHRAFVHEGKSES
KCSHCSKIYVEFKSLRRHINQNHMSISASQCSFFCYWCSFRCTQLRMWRS
HILTAHYGESYAHRISWDTWTSLVDSEQANTAE*
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mRNA from alignment at tig00000016_pilon:53261..54389-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10191.t1 ID=Ggra10191.t1|Name=Ggra10191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1129bp|location=Sequence derived from alignment at tig00000016_pilon:53261..54389- (Gracilaria gracilis GNS1m male)
ATGCAGCCTGCTTCCCCAGCGCGCTCTCCCTCGCTGCCGCCAAAGCAACA
GCCGATGCGGTTGCAACCGCGCGCGCCGCCCTCCACGCCGCCGCACCACG
TCTCGCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCTGTCGCCGCTT
CCGCACCTCAACGCGCTGTCGAGCGGCGCGGCGGCGGCGGCGGCACGCGT
GCAGGACGCGCGCGGCGGCGGCGGCGGCGGCGGCGGCGTTGCGGCGCACA
GCCGCGCGCTTCAGCACTACCTGCAGCAGCAGCCGCCGGCGGCCGGCGGC
ACCAAGGGGGCGGCGGTGCTTCCGCGGCTGGCGGCGGACTTCAGCCTCAC
GGAGGCGGACGCGCTGATCGCCAGCGCGGTGGGCGACACGTGCCTTCCGT
GCGCGCCGTTTGAAGCGCACACGCTGCTGCCAAGCTACGTGCGCAACGGC
GCGTCGCCCAGCGCGCTGGGGCACTACGCGCTGCGCGCGGCGGCGGCGGC
GGCGGCGCGCCCGTACGCGCCGCTGGCGCTGGCGCACGGCTACGTGGACG
TGGCGCGCGGCGAGCACGCGAACGCGTGCGGCGAGCTGCCGCTGCCGCTG
GCGGCGGCGCACGGCGACGCTGCGTTGCAGTGGCGCAGCGCGCCGCGCGC
GGCCAACAAATGGACGTGTAACAGCTGTTCGTACCAGTTTGCTTACAAGG
ACCACCTCGCCAGACACCGCGCGTTCGTGCACGAGGGAAAGAGCGAGAGC
AAATGCAGCCATTGCTCCAAGATCTACGTGGAGTTTAAAAGCCTTCGCCG
ACACATCAACGTAAGTTTTGTTGTTTATATATCCAATGGATAATAATATT
ATCTCTACACGCCGTACTTTGTATTAACAGCCGATTTGTTTGATGCGTTT
CCTGCGATCACTTGCAAAAAAAAAAAAAAACGGGCAGCAAAACCATATGA
GCATTTCGGCATCGCAGTGCTCCTTCTTCTGCTATTGGTGCTCGTTCCGA
TGCACGCAGCTGCGCATGTGGAGAAGTCATATCCTGACGGCGCACTACGG
CGAGAGCTATGCTCACCGCATTAGCTGGGACACATGGACAAGTTTGGTTG
ACTCGGAACAAGCAAACACAGCAGAGTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:53261..54389-

>Ggra10191.t1 ID=Ggra10191.t1|Name=Ggra10191.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000016_pilon:53261..54389- (Gracilaria gracilis GNS1m male)
ATGCAGCCTGCTTCCCCAGCGCGCTCTCCCTCGCTGCCGCCAAAGCAACA
GCCGATGCGGTTGCAACCGCGCGCGCCGCCCTCCACGCCGCCGCACCACG
TCTCGCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCTGTCGCCGCTT
CCGCACCTCAACGCGCTGTCGAGCGGCGCGGCGGCGGCGGCGGCACGCGT
GCAGGACGCGCGCGGCGGCGGCGGCGGCGGCGGCGGCGTTGCGGCGCACA
GCCGCGCGCTTCAGCACTACCTGCAGCAGCAGCCGCCGGCGGCCGGCGGC
ACCAAGGGGGCGGCGGTGCTTCCGCGGCTGGCGGCGGACTTCAGCCTCAC
GGAGGCGGACGCGCTGATCGCCAGCGCGGTGGGCGACACGTGCCTTCCGT
GCGCGCCGTTTGAAGCGCACACGCTGCTGCCAAGCTACGTGCGCAACGGC
GCGTCGCCCAGCGCGCTGGGGCACTACGCGCTGCGCGCGGCGGCGGCGGC
GGCGGCGCGCCCGTACGCGCCGCTGGCGCTGGCGCACGGCTACGTGGACG
TGGCGCGCGGCGAGCACGCGAACGCGTGCGGCGAGCTGCCGCTGCCGCTG
GCGGCGGCGCACGGCGACGCTGCGTTGCAGTGGCGCAGCGCGCCGCGCGC
GGCCAACAAATGGACGTGTAACAGCTGTTCGTACCAGTTTGCTTACAAGG
ACCACCTCGCCAGACACCGCGCGTTCGTGCACGAGGGAAAGAGCGAGAGC
AAATGCAGCCATTGCTCCAAGATCTACGTGGAGTTTAAAAGCCTTCGCCG
ACACATCAACCAAAACCATATGAGCATTTCGGCATCGCAGTGCTCCTTCT
TCTGCTATTGGTGCTCGTTCCGATGCACGCAGCTGCGCATGTGGAGAAGT
CATATCCTGACGGCGCACTACGGCGAGAGCTATGCTCACCGCATTAGCTG
GGACACATGGACAAGTTTGGTTGACTCGGAACAAGCAAACACAGCAGAGT
AA
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