Ggra10190.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10190.t1
Unique NameGgra10190.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:51882..53252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10190Ggra10190Gracilaria gracilis GNS1m malegenetig00000016_pilon 51882..53252 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10190.t1.start1Ggra10190.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 51882..51884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10190.t1.CDS1Ggra10190.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 51882..53252 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10190.t1.exon1Ggra10190.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 51882..53252 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10190.t1.stop1Ggra10190.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 53250..53252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10190.t1Ggra10190.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 51882..53252 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10190.t1 ID=Ggra10190.t1|Name=Ggra10190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=457bp
MQRAREPPSAERLLSQPQQPQQPQQPQQPQQPQQPQQQLLPPPAEQLVLQ
QQPTRRASLLASIRALALPTASRAGADADADGADGADGADGGADGAAPSL
LSRTSALFSRRSLLHARRSEPDATPLRHLISPPARYARDADDAQLHTACS
SLHALRTRASWFGLAPGASPRRRTSRDAQLLEWEQLIRLPRLHVVRRAAQ
KRVFAAPAFTLAPYDRRAPADAVALYTNALRAESRTLLFLLFCLHERQPR
LEKGDVLSLFLWLQPYVRFVHAVLALLAQHWLPRLQLRGAFAAHAPYAFF
THASSRLARTLSKLLSHQRRFVQSAPPLAARKLRQLLEPYAHLLLRYCVQ
LDAVSAPFLRRNFTEQQTHVLGKQLVAELKHMAHFSSNLVLLLRWLSNRP
ETASYWRRDHLDGITAVRYTQWKKARKQHEIVCYFANKARAFPCDRYYED
ATLPTF*
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spliced messenger RNA

>Ggra10190.t1 ID=Ggra10190.t1|Name=Ggra10190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000016_pilon:51882..53252+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGCGCGCGCGAGCCGCCGTCCGCAGAGCGGCTGCTGTCgcagcc
gcagcagccgcagcagccgcagcagccgcagcagccgcagcagccgcagc
agccgcagcagcAGCTGCTGCCGCCGCCCGCGGAGCAACTTGTGCTGCAG
CAGCAGCCGACACGCCGCGCGTCGCTGCTGGCGTCTATCCGCGCGCTCGC
GTTGCCGACCGCGTCGCGCGCGggcgccgacgccgacgccgacggcgccg
acggcgccgacggcgccgacggcgGCGCGGATGGCGCGGCGCCGAGCCTG
TTGTCGCGCACGTCGGCGCTGTTCTCCCGGCGCTCGCTGCTGCACGCGCG
CCGCTCGGAGCCGGACGCCACGCCGCTGCGCCACCTCATCTCGCCGCCGG
CGCGCTACGCGCGCGACGCCGACGACGCGCAGCTGCACACGGCGTGCTCG
TCGCTGCACGCGCTGCGCACGCGCGCGTCGTGGTTCGGGCTGGCGCCGGG
CGCGTCGCCGCGGCGCCGCACCTCGCGCGACGCGCAGCTGCTGGAGTGGG
AGCAGCTCATCCGGCTGCCGCGGCTGCACGTGGTGCGGCGCGCCGCGCAG
AAGCGCGTGTTCGCGGCGCCGGCGTTCACGCTGGCGCCGTACGACCGCCG
CGCGCCGGCGGACGCCGTGGCGCTGTACACCAACGCGCTCAGAGCGGAGT
CGCGCACGCTGCTGTTCCTGCTGTTCTGCCTGCACGAGCGGCAGCCGCGG
CTGGAGAAGGGCGACGTgctgtcgctgttcctgtggctgcagccgtacgt
gcgcttcgtgcacgcggtgctggcgctgCTGGCGCAGCACTGGCTGCCGC
GCCTGCAGCTGCGCGGCGCGTTTGCGGCGCACGCGCCGTACGCCTTCTTC
ACGCACGCGTCGTCGCGGCTGGCGCGCACGCTGAGCAAGCTGCTGTCGCA
CCAGAGGCGCTTTGTGCAGAGCGCGCCGCCGCTGGCGGCGCGCAAGCTGC
GCCAGCTGCTTGAACCGTACGCGCACTTGCTGCTGCGCTACTGCGTGCAG
CTGGACGCGGTGTCGGCGCCGTTCCTTCGGCGCAACTTTACAGAGCAGCA
GACGCACGTGTTGGGCAAGCAGCTGGTGGCTGAGCTCAAGCACATGGCGC
ACTTTAGCAGCAACTTGGTGCTGTTGCTGCGCTGGCTGTCCAATCGGCCG
GAGACGGCGTCGTACTGGCGACGCGACCACCTGGACGGCATCACCGCCGT
GCGCTACACGCAGTGGAAAAAGGCGCGTAAGCAGCACGAGATTGTGTGCT
ATTTTGCAAACAAGGCTCGTGCTTTTCCGTGCGACCGCTACTATGAAGAC
GCGACGCTTCCGACGTTTTGA
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protein sequence of Ggra10190.t1

>Ggra10190.t1 ID=Ggra10190.t1|Name=Ggra10190.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=457bp
MQRAREPPSAERLLSQPQQPQQPQQPQQPQQPQQPQQQLLPPPAEQLVLQ
QQPTRRASLLASIRALALPTASRAGADADADGADGADGADGGADGAAPSL
LSRTSALFSRRSLLHARRSEPDATPLRHLISPPARYARDADDAQLHTACS
SLHALRTRASWFGLAPGASPRRRTSRDAQLLEWEQLIRLPRLHVVRRAAQ
KRVFAAPAFTLAPYDRRAPADAVALYTNALRAESRTLLFLLFCLHERQPR
LEKGDVLSLFLWLQPYVRFVHAVLALLAQHWLPRLQLRGAFAAHAPYAFF
THASSRLARTLSKLLSHQRRFVQSAPPLAARKLRQLLEPYAHLLLRYCVQ
LDAVSAPFLRRNFTEQQTHVLGKQLVAELKHMAHFSSNLVLLLRWLSNRP
ETASYWRRDHLDGITAVRYTQWKKARKQHEIVCYFANKARAFPCDRYYED
ATLPTF*
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mRNA from alignment at tig00000016_pilon:51882..53252+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10190.t1 ID=Ggra10190.t1|Name=Ggra10190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000016_pilon:51882..53252+ (Gracilaria gracilis GNS1m male)
ATGCAGCGCGCGCGCGAGCCGCCGTCCGCAGAGCGGCTGCTGTCgcagcc
gcagcagccgcagcagccgcagcagccgcagcagccgcagcagccgcagc
agccgcagcagcAGCTGCTGCCGCCGCCCGCGGAGCAACTTGTGCTGCAG
CAGCAGCCGACACGCCGCGCGTCGCTGCTGGCGTCTATCCGCGCGCTCGC
GTTGCCGACCGCGTCGCGCGCGggcgccgacgccgacgccgacggcgccg
acggcgccgacggcgccgacggcgGCGCGGATGGCGCGGCGCCGAGCCTG
TTGTCGCGCACGTCGGCGCTGTTCTCCCGGCGCTCGCTGCTGCACGCGCG
CCGCTCGGAGCCGGACGCCACGCCGCTGCGCCACCTCATCTCGCCGCCGG
CGCGCTACGCGCGCGACGCCGACGACGCGCAGCTGCACACGGCGTGCTCG
TCGCTGCACGCGCTGCGCACGCGCGCGTCGTGGTTCGGGCTGGCGCCGGG
CGCGTCGCCGCGGCGCCGCACCTCGCGCGACGCGCAGCTGCTGGAGTGGG
AGCAGCTCATCCGGCTGCCGCGGCTGCACGTGGTGCGGCGCGCCGCGCAG
AAGCGCGTGTTCGCGGCGCCGGCGTTCACGCTGGCGCCGTACGACCGCCG
CGCGCCGGCGGACGCCGTGGCGCTGTACACCAACGCGCTCAGAGCGGAGT
CGCGCACGCTGCTGTTCCTGCTGTTCTGCCTGCACGAGCGGCAGCCGCGG
CTGGAGAAGGGCGACGTgctgtcgctgttcctgtggctgcagccgtacgt
gcgcttcgtgcacgcggtgctggcgctgCTGGCGCAGCACTGGCTGCCGC
GCCTGCAGCTGCGCGGCGCGTTTGCGGCGCACGCGCCGTACGCCTTCTTC
ACGCACGCGTCGTCGCGGCTGGCGCGCACGCTGAGCAAGCTGCTGTCGCA
CCAGAGGCGCTTTGTGCAGAGCGCGCCGCCGCTGGCGGCGCGCAAGCTGC
GCCAGCTGCTTGAACCGTACGCGCACTTGCTGCTGCGCTACTGCGTGCAG
CTGGACGCGGTGTCGGCGCCGTTCCTTCGGCGCAACTTTACAGAGCAGCA
GACGCACGTGTTGGGCAAGCAGCTGGTGGCTGAGCTCAAGCACATGGCGC
ACTTTAGCAGCAACTTGGTGCTGTTGCTGCGCTGGCTGTCCAATCGGCCG
GAGACGGCGTCGTACTGGCGACGCGACCACCTGGACGGCATCACCGCCGT
GCGCTACACGCAGTGGAAAAAGGCGCGTAAGCAGCACGAGATTGTGTGCT
ATTTTGCAAACAAGGCTCGTGCTTTTCCGTGCGACCGCTACTATGAAGAC
GCGACGCTTCCGACGTTTTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:51882..53252+

>Ggra10190.t1 ID=Ggra10190.t1|Name=Ggra10190.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1371bp|location=Sequence derived from alignment at tig00000016_pilon:51882..53252+ (Gracilaria gracilis GNS1m male)
ATGCAGCGCGCGCGCGAGCCGCCGTCCGCAGAGCGGCTGCTGTCgcagcc
gcagcagccgcagcagccgcagcagccgcagcagccgcagcagccgcagc
agccgcagcagcAGCTGCTGCCGCCGCCCGCGGAGCAACTTGTGCTGCAG
CAGCAGCCGACACGCCGCGCGTCGCTGCTGGCGTCTATCCGCGCGCTCGC
GTTGCCGACCGCGTCGCGCGCGggcgccgacgccgacgccgacggcgccg
acggcgccgacggcgccgacggcgGCGCGGATGGCGCGGCGCCGAGCCTG
TTGTCGCGCACGTCGGCGCTGTTCTCCCGGCGCTCGCTGCTGCACGCGCG
CCGCTCGGAGCCGGACGCCACGCCGCTGCGCCACCTCATCTCGCCGCCGG
CGCGCTACGCGCGCGACGCCGACGACGCGCAGCTGCACACGGCGTGCTCG
TCGCTGCACGCGCTGCGCACGCGCGCGTCGTGGTTCGGGCTGGCGCCGGG
CGCGTCGCCGCGGCGCCGCACCTCGCGCGACGCGCAGCTGCTGGAGTGGG
AGCAGCTCATCCGGCTGCCGCGGCTGCACGTGGTGCGGCGCGCCGCGCAG
AAGCGCGTGTTCGCGGCGCCGGCGTTCACGCTGGCGCCGTACGACCGCCG
CGCGCCGGCGGACGCCGTGGCGCTGTACACCAACGCGCTCAGAGCGGAGT
CGCGCACGCTGCTGTTCCTGCTGTTCTGCCTGCACGAGCGGCAGCCGCGG
CTGGAGAAGGGCGACGTgctgtcgctgttcctgtggctgcagccgtacgt
gcgcttcgtgcacgcggtgctggcgctgCTGGCGCAGCACTGGCTGCCGC
GCCTGCAGCTGCGCGGCGCGTTTGCGGCGCACGCGCCGTACGCCTTCTTC
ACGCACGCGTCGTCGCGGCTGGCGCGCACGCTGAGCAAGCTGCTGTCGCA
CCAGAGGCGCTTTGTGCAGAGCGCGCCGCCGCTGGCGGCGCGCAAGCTGC
GCCAGCTGCTTGAACCGTACGCGCACTTGCTGCTGCGCTACTGCGTGCAG
CTGGACGCGGTGTCGGCGCCGTTCCTTCGGCGCAACTTTACAGAGCAGCA
GACGCACGTGTTGGGCAAGCAGCTGGTGGCTGAGCTCAAGCACATGGCGC
ACTTTAGCAGCAACTTGGTGCTGTTGCTGCGCTGGCTGTCCAATCGGCCG
GAGACGGCGTCGTACTGGCGACGCGACCACCTGGACGGCATCACCGCCGT
GCGCTACACGCAGTGGAAAAAGGCGCGTAAGCAGCACGAGATTGTGTGCT
ATTTTGCAAACAAGGCTCGTGCTTTTCCGTGCGACCGCTACTATGAAGAC
GCGACGCTTCCGACGTTTTGA
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