Ggra1019.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1019.t1
Unique NameGgra1019.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length394
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:592504..593753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1019Ggra1019Gracilaria gracilis GNS1m malegenetig00000027_pilon 592504..593753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1019.t1Ggra1019.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 592504..593753 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1019.t1.stop1Ggra1019.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 592504..592506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1019.t1.CDS1Ggra1019.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 592504..593504 -
Ggra1019.t1.CDS2Ggra1019.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000027_pilon 593573..593753 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1019.t1.exon1Ggra1019.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 592504..593504 -
Ggra1019.t1.exon2Ggra1019.t1.exon2Gracilaria gracilis GNS1m maleexontig00000027_pilon 593573..593753 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1019.t1.intron1Ggra1019.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000027_pilon 593505..593572 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1019.t1.start1Ggra1019.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 593751..593753 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1019.t1 ID=Ggra1019.t1|Name=Ggra1019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=394bp
MRTPLPNIQSTKTAGIQISSDYENDNATQNVPLPLPNIQIPSSLQTPAIT
KPSPGNTNFLSRNDTEASTAKSAGRKQIKTQVQKNMIRREKAFTEEEALS
LAKAWVMQSMKEPNQTESTLWNDIATICEKRFMMQRSSESLRCKWTQLAR
KSQHFLAARRKVKAQKISGVTAEDVEALAIELYRKKASRKDAQGVHQYAT
PFKFISAAEYLSTQQKFEADLVKQDPVDNIANTLSTEAHNITVAERGAET
SRADAKDGNGSIEIDIVGKPSLSTRSNRSRPTGVKRLKQDESLEKVGANL
THTLEELSKKVEAGNQVLMAMKQQGEDLGEADNDCRLLQLLDRDSDEYKD
ILADVLARRKNRMRKRSACSALEDEREGKKRKPVEESLEVLDE*
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spliced messenger RNA

>Ggra1019.t1 ID=Ggra1019.t1|Name=Ggra1019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1182bp|location=Sequence derived from alignment at tig00000027_pilon:592504..593753- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGACGCCATTGCCAAACATTCAAAGCACAAAAACAGCTGGTATACA
AATATCATCCGATTACGAGAATGACAACGCTACACAAAACGTCCCGCTGC
CACTTCCCAACATCCAAATTCCTAGCAGTTTGCAAACACCGGCTATTACC
AAGCCTTCACCGGGAAACACAAATTTTCTGAGTAGAAATGATACAGAAGC
TTCAACCGCGAAGTCTGCAGGTAGAAAACAGATCAAAACACAAGTGCAAA
AGAACATGATTAGAAGAGAGAAAGCGTTTACTGAGGAGGAAGCTTTGAGC
CTTGCAAAAGCTTGGGTAATGCAGTCCATGAAAGAGCCAAACCAAACTGA
GTCAACTTTGTGGAACGACATCGCCACAATTTGCGAAAAACGCTTTATGA
TGCAGAGGTCCAGCGAGTCTCTGCGCTGCAAATGGACGCAACTCGCGCGT
AAATCGCAGCATTTTCTTGCTGCACGTAGAAAGGTCAAGGCACAAAAGAT
CTCCGGAGTGACAGCCGAAGACGTAGAGGCTCTAGCTATAGAGCTTTACA
GAAAGAAGGCAAGTAGAAAGGATGCACAAGGTGTGCATCAATACGCAACA
CCATTCAAATTCATCAGTGCTGCTGAATACTTGTCCACACAACAAAAATT
TGAGGCGGACCTCGTGAAGCAAGATCCTGTAGATAACATTGCCAATACTT
TGAGCACCGAAGCACACAATATTACTGTAGCAGAGAGAGGAGCAGAGACA
TCACGGGCGGATGCTAAAGACGGCAATGGCAGTATCGAGATCGACATAGT
TGGCAAGCCATCTCTGTCTACACGCAGCAACCGTTCTCGCCCTACAGGAG
TGAAACGACTCAAACAAGATGAATCTCTAGAAAAAGTGGGAGCCAACCTG
ACTCACACCTTGGAAGAACTTTCGAAAAAGGTGGAAGCCGGCAATCAAGT
TTTAATGGCGATGAAGCAGCAGGGTGAGGATCTGGGGGAGGCTGATAATG
ACTGCAGGCTGTTGCAGCTCCTGGATAGAGATTCAGACGAATACAAAGAT
ATACTGGCAGACGTTCTGGCGAGGAGGAAGAACAGAATGCGCAAACGTAG
CGCCTGTAGCGCACTAGAGGACGAAAGAGAGGGAAAGAAACGTAAACCCG
TTGAAGAGAGTTTAGAGGTATTGGATGAATAG
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protein sequence of Ggra1019.t1

>Ggra1019.t1 ID=Ggra1019.t1|Name=Ggra1019.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=394bp
MRTPLPNIQSTKTAGIQISSDYENDNATQNVPLPLPNIQIPSSLQTPAIT
KPSPGNTNFLSRNDTEASTAKSAGRKQIKTQVQKNMIRREKAFTEEEALS
LAKAWVMQSMKEPNQTESTLWNDIATICEKRFMMQRSSESLRCKWTQLAR
KSQHFLAARRKVKAQKISGVTAEDVEALAIELYRKKASRKDAQGVHQYAT
PFKFISAAEYLSTQQKFEADLVKQDPVDNIANTLSTEAHNITVAERGAET
SRADAKDGNGSIEIDIVGKPSLSTRSNRSRPTGVKRLKQDESLEKVGANL
THTLEELSKKVEAGNQVLMAMKQQGEDLGEADNDCRLLQLLDRDSDEYKD
ILADVLARRKNRMRKRSACSALEDEREGKKRKPVEESLEVLDE*
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mRNA from alignment at tig00000027_pilon:592504..593753-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1019.t1 ID=Ggra1019.t1|Name=Ggra1019.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1250bp|location=Sequence derived from alignment at tig00000027_pilon:592504..593753- (Gracilaria gracilis GNS1m male)
ATGAGGACGCCATTGCCAAACATTCAAAGCACAAAAACAGCTGGTATACA
AATATCATCCGATTACGAGAATGACAACGCTACACAAAACGTCCCGCTGC
CACTTCCCAACATCCAAATTCCTAGCAGTTTGCAAACACCGGCTATTACC
AAGCCTTCACCGGGAAACACAAATTTTCTGAGTACGTAGTCAATGACAAA
AGAGTCTCTACAATGAACAAGCATGAACTAACTTTTCCTTTGTTTGCAGG
TAGAAATGATACAGAAGCTTCAACCGCGAAGTCTGCAGGTAGAAAACAGA
TCAAAACACAAGTGCAAAAGAACATGATTAGAAGAGAGAAAGCGTTTACT
GAGGAGGAAGCTTTGAGCCTTGCAAAAGCTTGGGTAATGCAGTCCATGAA
AGAGCCAAACCAAACTGAGTCAACTTTGTGGAACGACATCGCCACAATTT
GCGAAAAACGCTTTATGATGCAGAGGTCCAGCGAGTCTCTGCGCTGCAAA
TGGACGCAACTCGCGCGTAAATCGCAGCATTTTCTTGCTGCACGTAGAAA
GGTCAAGGCACAAAAGATCTCCGGAGTGACAGCCGAAGACGTAGAGGCTC
TAGCTATAGAGCTTTACAGAAAGAAGGCAAGTAGAAAGGATGCACAAGGT
GTGCATCAATACGCAACACCATTCAAATTCATCAGTGCTGCTGAATACTT
GTCCACACAACAAAAATTTGAGGCGGACCTCGTGAAGCAAGATCCTGTAG
ATAACATTGCCAATACTTTGAGCACCGAAGCACACAATATTACTGTAGCA
GAGAGAGGAGCAGAGACATCACGGGCGGATGCTAAAGACGGCAATGGCAG
TATCGAGATCGACATAGTTGGCAAGCCATCTCTGTCTACACGCAGCAACC
GTTCTCGCCCTACAGGAGTGAAACGACTCAAACAAGATGAATCTCTAGAA
AAAGTGGGAGCCAACCTGACTCACACCTTGGAAGAACTTTCGAAAAAGGT
GGAAGCCGGCAATCAAGTTTTAATGGCGATGAAGCAGCAGGGTGAGGATC
TGGGGGAGGCTGATAATGACTGCAGGCTGTTGCAGCTCCTGGATAGAGAT
TCAGACGAATACAAAGATATACTGGCAGACGTTCTGGCGAGGAGGAAGAA
CAGAATGCGCAAACGTAGCGCCTGTAGCGCACTAGAGGACGAAAGAGAGG
GAAAGAAACGTAAACCCGTTGAAGAGAGTTTAGAGGTATTGGATGAATAG
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Coding sequence (CDS) from alignment at tig00000027_pilon:592504..593753-

>Ggra1019.t1 ID=Ggra1019.t1|Name=Ggra1019.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1182bp|location=Sequence derived from alignment at tig00000027_pilon:592504..593753- (Gracilaria gracilis GNS1m male)
ATGAGGACGCCATTGCCAAACATTCAAAGCACAAAAACAGCTGGTATACA
AATATCATCCGATTACGAGAATGACAACGCTACACAAAACGTCCCGCTGC
CACTTCCCAACATCCAAATTCCTAGCAGTTTGCAAACACCGGCTATTACC
AAGCCTTCACCGGGAAACACAAATTTTCTGAGTAGAAATGATACAGAAGC
TTCAACCGCGAAGTCTGCAGGTAGAAAACAGATCAAAACACAAGTGCAAA
AGAACATGATTAGAAGAGAGAAAGCGTTTACTGAGGAGGAAGCTTTGAGC
CTTGCAAAAGCTTGGGTAATGCAGTCCATGAAAGAGCCAAACCAAACTGA
GTCAACTTTGTGGAACGACATCGCCACAATTTGCGAAAAACGCTTTATGA
TGCAGAGGTCCAGCGAGTCTCTGCGCTGCAAATGGACGCAACTCGCGCGT
AAATCGCAGCATTTTCTTGCTGCACGTAGAAAGGTCAAGGCACAAAAGAT
CTCCGGAGTGACAGCCGAAGACGTAGAGGCTCTAGCTATAGAGCTTTACA
GAAAGAAGGCAAGTAGAAAGGATGCACAAGGTGTGCATCAATACGCAACA
CCATTCAAATTCATCAGTGCTGCTGAATACTTGTCCACACAACAAAAATT
TGAGGCGGACCTCGTGAAGCAAGATCCTGTAGATAACATTGCCAATACTT
TGAGCACCGAAGCACACAATATTACTGTAGCAGAGAGAGGAGCAGAGACA
TCACGGGCGGATGCTAAAGACGGCAATGGCAGTATCGAGATCGACATAGT
TGGCAAGCCATCTCTGTCTACACGCAGCAACCGTTCTCGCCCTACAGGAG
TGAAACGACTCAAACAAGATGAATCTCTAGAAAAAGTGGGAGCCAACCTG
ACTCACACCTTGGAAGAACTTTCGAAAAAGGTGGAAGCCGGCAATCAAGT
TTTAATGGCGATGAAGCAGCAGGGTGAGGATCTGGGGGAGGCTGATAATG
ACTGCAGGCTGTTGCAGCTCCTGGATAGAGATTCAGACGAATACAAAGAT
ATACTGGCAGACGTTCTGGCGAGGAGGAAGAACAGAATGCGCAAACGTAG
CGCCTGTAGCGCACTAGAGGACGAAAGAGAGGGAAAGAAACGTAAACCCG
TTGAAGAGAGTTTAGAGGTATTGGATGAATAG
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