Ggra10188.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10188.t1
Unique NameGgra10188.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:43080..43976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706509.1
PFAMsadh_short
Max annot lvl2759|Eukaryota
Evalue1.44e-106
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
Descriptionoxidation-reduction process
COG categoryIQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10188Ggra10188Gracilaria gracilis GNS1m malegenetig00000016_pilon 43080..43976 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10188.t1.stop1Ggra10188.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 43080..43082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10188.t1.CDS1Ggra10188.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 43080..43976 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10188.t1.exon1Ggra10188.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 43080..43976 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10188.t1.start1Ggra10188.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 43974..43976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10188.t1Ggra10188.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 43080..43976 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10188.t1 ID=Ggra10188.t1|Name=Ggra10188.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=299bp
MPSSNPEKQLRGRVAVITGASRGIGREIALAFAKAGCNVVIAAKSVKEKP
NLPGTIYTVADEVRQYGSDALPFQCDVRNPENIHKMMQKTFETYGRIDFL
VCNSGALWWKDVEHTPMSRYDLVHEVNVRATFCCVHEVLPIMKRQGFGRI
IVMSPPVDLGWLRGKVAYGISKYGMTMIAMGVAKEVIGTGISINALWPAT
MIESYATKNFKLAARSQWRKATIISDCVLKMVQEPPEILNGQAIIDEDYL
RGRGVTNFKKYRCVEEVEPMKVWPPTGDILVQGAKNAKGVPPGISARL*
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spliced messenger RNA

>Ggra10188.t1 ID=Ggra10188.t1|Name=Ggra10188.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000016_pilon:43080..43976- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCATCAAATCCTGAGAAGCAATTGAGGGGGCGCGTGGCTGTGAT
TACGGGTGCAAGCAGAGGTATTGGTCGTGAAATCGCTTTAGCGTTCGCAA
AGGCTGGTTGTAATGTCGTTATTGCCGCCAAGAGCGTCAAAGAAAAACCA
AATCTTCCAGGCACCATATACACAGTTGCGGACGAAGTACGCCAATATGG
ATCTGACGCATTGCCTTTCCAATGCGATGTTCGAAATCCGGAAAACATCC
ACAAGATGATGCAGAAGACCTTCGAAACGTACGGCAGAATCGACTTTCTT
GTTTGTAACAGCGGTGCCCTTTGGTGGAAAGATGTCGAGCATACTCCAAT
GTCTAGGTATGATCTAGTACATGAGGTAAATGTCCGGGCAACGTTTTGCT
GTGTTCACGAAGTCCTTCCGATAATGAAACGACAAGGATTTGGTCGAATT
ATTGTGATGAGTCCTCCGGTTGATCTGGGATGGCTTCGGGGCAAAGTTGC
GTACGGTATCTCTAAATATGGTATGACAATGATAGCCATGGGAGTTGCAA
AGGAGGTGATTGGAACTGGCATAAGTATAAATGCCTTATGGCCTGCTACA
ATGATAGAGAGTTACGCAACAAAGAACTTCAAATTGGCCGCACGTAGTCA
GTGGAGGAAGGCAACTATAATATCAGACTGTGTATTGAAGATGGTCCAGG
AGCCGCCAGAGATTTTGAATGGGCAAGCAATTATCGACGAAGATTATCTG
CGTGGTCGGGGGGTAACGAACTTCAAGAAGTATCGCTGTGTAGAAGAGGT
CGAGCCGATGAAAGTTTGGCCACCGACTGGTGACATATTAGTACAAGGAG
CGAAAAACGCGAAAGGCGTTCCTCCGGGGATAAGTGCTCGTCTCTAG
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protein sequence of Ggra10188.t1

>Ggra10188.t1 ID=Ggra10188.t1|Name=Ggra10188.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=299bp
MPSSNPEKQLRGRVAVITGASRGIGREIALAFAKAGCNVVIAAKSVKEKP
NLPGTIYTVADEVRQYGSDALPFQCDVRNPENIHKMMQKTFETYGRIDFL
VCNSGALWWKDVEHTPMSRYDLVHEVNVRATFCCVHEVLPIMKRQGFGRI
IVMSPPVDLGWLRGKVAYGISKYGMTMIAMGVAKEVIGTGISINALWPAT
MIESYATKNFKLAARSQWRKATIISDCVLKMVQEPPEILNGQAIIDEDYL
RGRGVTNFKKYRCVEEVEPMKVWPPTGDILVQGAKNAKGVPPGISARL*
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mRNA from alignment at tig00000016_pilon:43080..43976-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10188.t1 ID=Ggra10188.t1|Name=Ggra10188.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00000016_pilon:43080..43976- (Gracilaria gracilis GNS1m male)
ATGCCATCATCAAATCCTGAGAAGCAATTGAGGGGGCGCGTGGCTGTGAT
TACGGGTGCAAGCAGAGGTATTGGTCGTGAAATCGCTTTAGCGTTCGCAA
AGGCTGGTTGTAATGTCGTTATTGCCGCCAAGAGCGTCAAAGAAAAACCA
AATCTTCCAGGCACCATATACACAGTTGCGGACGAAGTACGCCAATATGG
ATCTGACGCATTGCCTTTCCAATGCGATGTTCGAAATCCGGAAAACATCC
ACAAGATGATGCAGAAGACCTTCGAAACGTACGGCAGAATCGACTTTCTT
GTTTGTAACAGCGGTGCCCTTTGGTGGAAAGATGTCGAGCATACTCCAAT
GTCTAGGTATGATCTAGTACATGAGGTAAATGTCCGGGCAACGTTTTGCT
GTGTTCACGAAGTCCTTCCGATAATGAAACGACAAGGATTTGGTCGAATT
ATTGTGATGAGTCCTCCGGTTGATCTGGGATGGCTTCGGGGCAAAGTTGC
GTACGGTATCTCTAAATATGGTATGACAATGATAGCCATGGGAGTTGCAA
AGGAGGTGATTGGAACTGGCATAAGTATAAATGCCTTATGGCCTGCTACA
ATGATAGAGAGTTACGCAACAAAGAACTTCAAATTGGCCGCACGTAGTCA
GTGGAGGAAGGCAACTATAATATCAGACTGTGTATTGAAGATGGTCCAGG
AGCCGCCAGAGATTTTGAATGGGCAAGCAATTATCGACGAAGATTATCTG
CGTGGTCGGGGGGTAACGAACTTCAAGAAGTATCGCTGTGTAGAAGAGGT
CGAGCCGATGAAAGTTTGGCCACCGACTGGTGACATATTAGTACAAGGAG
CGAAAAACGCGAAAGGCGTTCCTCCGGGGATAAGTGCTCGTCTCTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:43080..43976-

>Ggra10188.t1 ID=Ggra10188.t1|Name=Ggra10188.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=897bp|location=Sequence derived from alignment at tig00000016_pilon:43080..43976- (Gracilaria gracilis GNS1m male)
ATGCCATCATCAAATCCTGAGAAGCAATTGAGGGGGCGCGTGGCTGTGAT
TACGGGTGCAAGCAGAGGTATTGGTCGTGAAATCGCTTTAGCGTTCGCAA
AGGCTGGTTGTAATGTCGTTATTGCCGCCAAGAGCGTCAAAGAAAAACCA
AATCTTCCAGGCACCATATACACAGTTGCGGACGAAGTACGCCAATATGG
ATCTGACGCATTGCCTTTCCAATGCGATGTTCGAAATCCGGAAAACATCC
ACAAGATGATGCAGAAGACCTTCGAAACGTACGGCAGAATCGACTTTCTT
GTTTGTAACAGCGGTGCCCTTTGGTGGAAAGATGTCGAGCATACTCCAAT
GTCTAGGTATGATCTAGTACATGAGGTAAATGTCCGGGCAACGTTTTGCT
GTGTTCACGAAGTCCTTCCGATAATGAAACGACAAGGATTTGGTCGAATT
ATTGTGATGAGTCCTCCGGTTGATCTGGGATGGCTTCGGGGCAAAGTTGC
GTACGGTATCTCTAAATATGGTATGACAATGATAGCCATGGGAGTTGCAA
AGGAGGTGATTGGAACTGGCATAAGTATAAATGCCTTATGGCCTGCTACA
ATGATAGAGAGTTACGCAACAAAGAACTTCAAATTGGCCGCACGTAGTCA
GTGGAGGAAGGCAACTATAATATCAGACTGTGTATTGAAGATGGTCCAGG
AGCCGCCAGAGATTTTGAATGGGCAAGCAATTATCGACGAAGATTATCTG
CGTGGTCGGGGGGTAACGAACTTCAAGAAGTATCGCTGTGTAGAAGAGGT
CGAGCCGATGAAAGTTTGGCCACCGACTGGTGACATATTAGTACAAGGAG
CGAAAAACGCGAAAGGCGTTCCTCCGGGGATAAGTGCTCGTCTCTAG
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