Ggra10186.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10186.t1
Unique NameGgra10186.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:38175..39569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706196.1
Preferred nameSARS
PFAMsSeryl_tRNA_N,tRNA-synt_2b
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01875
KEGG ReactionR03662,R08218
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000122,GO:0000166,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001525,GO:0001568,GO:0001569,GO:0001763,GO:0001817,GO:0001818,GO:0001944,GO:0002009,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003824,GO:0004812,GO:0004828,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006412,GO:0006418,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009069,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010574,GO:0010605,GO:0010629,GO:0016070,GO:0016259,GO:0016525,GO:0016874,GO:0016875,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0022603,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0035239,GO:0035295,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042221,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043565,GO:0043603,GO:0043604,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045765,GO:0045892,GO:0045934,GO:0046483,GO:0046686,GO:0046983,GO:0048514,GO:0048519,GO:0048523,GO:0048646,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0060255,GO:0060429,GO:0060562,GO:0061138,GO:0065007,GO:0071704,GO:0072358,GO:0072359,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098619,GO:0140098,GO:0140101,GO:1901265,GO:1901342,GO:1901343,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1902679,GO:1903506,GO:1903507,GO:1903670,GO:1903671,GO:1904046,GO:1990837,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000181,GO:2001141
Evalue5.53e-176
EggNOG OGsCOG0172@1|root,KOG2509@2759|Eukaryota
EC6.1.1.11
Descriptionseryl-tRNA aminoacylation
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10186Ggra10186Gracilaria gracilis GNS1m malegenetig00000016_pilon 38175..39569 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10186.t1.stop1Ggra10186.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 38175..38177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10186.t1.CDS1Ggra10186.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 38175..39569 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10186.t1.exon1Ggra10186.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 38175..39569 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10186.t1.start1Ggra10186.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 39567..39569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10186.t1Ggra10186.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 38175..39569 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10186.t1 ID=Ggra10186.t1|Name=Ggra10186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp
MLDINLFREDRGGNPELVRESQRRRYKKESLVDDVIKWDKEWRSVRYDLD
CISKKRNELNGQMKEIKIKGRKPETNIDPDGSKEAKIKQEKEILAKDEAQ
LKERITVIEKERDTVLKSIGNVLHHTVPVFDDEEHNRVERVWPETGEQPP
APGKGLTHVDLLYMIGGVEYTRGVTCAGSRGYYLMGPAVMLNMAIIQYSL
RFLSERGYTAIQPPYFMEKDQMAKCAQLDDFDEQLYKVTGDGDKYLIATS
EQPICVYHADEWVEERNLPRKFAGFSTNFRKEAGSHGRDQLGIFRVHQFD
KIEQFCVTSPDDNASYEMLETMIHNAEEFYQTLGLTYQVISIVSGAMNDA
ASKKYDLEAWFPGASGGKGEYRELVSASNCTDYQSRKLETRCGIKKMGDT
NKRYVHMLNSTLCATTRTICCILESYQTESGITVPEVLRPLMGMDEIPFV
RDAPKIKVKGAKKK*
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spliced messenger RNA

>Ggra10186.t1 ID=Ggra10186.t1|Name=Ggra10186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000016_pilon:38175..39569- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGATATAAACCTTTTTCGCGAGGACCGCGGTGGAAATCCTGAATT
GGTGAGGGAAAGTCAGAGGAGAAGATACAAGAAGGAAAGTCTTGTGGATG
ACGTAATCAAGTGGGATAAAGAATGGCGATCCGTCCGATACGATCTAGAC
TGCATCTCAAAGAAGCGAAACGAACTCAACGGACAAATGAAAGAAATTAA
GATCAAAGGAAGAAAGCCAGAGACCAACATAGACCCAGACGGTTCGAAAG
AAGCGAAGATCAAGCAAGAAAAAGAAATTCTGGCCAAAGACGAGGCCCAA
CTCAAAGAACGAATCACAGTTATTGAAAAAGAGCGCGACACTGTCCTGAA
ATCCATCGGAAACGTGCTTCATCACACCGTGCCCGTGTTCGATGACGAAG
AGCACAATCGCGTCGAGCGCGTATGGCCGGAAACAGGCGAACAACCGCCA
GCTCCTGGCAAGGGACTCACGCACGTTGATCTACTATATATGATTGGTGG
GGTGGAGTACACCAGGGGAGTCACCTGTGCTGGTAGCAGAGGTTACTATC
TCATGGGACCGGCCGTGATGCTTAACATGGCTATCATTCAATACAGTCTA
CGTTTTCTGAGCGAGCGAGGTTACACTGCGATTCAACCACCGTATTTCAT
GGAAAAGGATCAAATGGCGAAGTGCGCACAGCTTGACGATTTCGACGAAC
AGTTGTACAAGGTCACCGGAGACGGTGACAAATATCTCATCGCAACAAGT
GAACAACCGATCTGCGTGTACCACGCAGATGAATGGGTTGAAGAACGAAA
TTTACCACGCAAATTCGCAGGCTTCTCCACGAACTTTAGGAAGGAAGCTG
GCTCTCACGGACGTGATCAACTGGGCATTTTCCGCGTGCATCAATTCGAT
AAGATTGAGCAGTTTTGCGTCACGTCTCCAGATGATAACGCTTCGTACGA
AATGCTAGAGACTATGATTCACAACGCAGAGGAGTTTTATCAAACGCTTG
GACTGACATACCAGGTCATCAGCATTGTTTCGGGCGCCATGAACGATGCG
GCGTCGAAGAAATATGACTTGGAGGCTTGGTTCCCCGGCGCTAGCGGCGG
AAAAGGCGAATATCGTGAACTGGTTTCAGCTTCAAACTGCACTGATTATC
AGTCGCGGAAGCTGGAGACCAGGTGCGGAATCAAGAAGATGGGAGATACG
AACAAACGATACGTGCACATGTTGAACTCGACTCTTTGCGCGACGACGAG
AACGATCTGTTGTATTTTGGAAAGTTATCAAACAGAGAGCGGAATCACAG
TACCGGAAGTGTTGCGCCCTTTGATGGGAATGGATGAGATTCCGTTTGTA
CGAGATGCGCCAAAGATCAAGGTGAAGGGCGCCAAGAAGAAGTGA
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protein sequence of Ggra10186.t1

>Ggra10186.t1 ID=Ggra10186.t1|Name=Ggra10186.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MLDINLFREDRGGNPELVRESQRRRYKKESLVDDVIKWDKEWRSVRYDLD
CISKKRNELNGQMKEIKIKGRKPETNIDPDGSKEAKIKQEKEILAKDEAQ
LKERITVIEKERDTVLKSIGNVLHHTVPVFDDEEHNRVERVWPETGEQPP
APGKGLTHVDLLYMIGGVEYTRGVTCAGSRGYYLMGPAVMLNMAIIQYSL
RFLSERGYTAIQPPYFMEKDQMAKCAQLDDFDEQLYKVTGDGDKYLIATS
EQPICVYHADEWVEERNLPRKFAGFSTNFRKEAGSHGRDQLGIFRVHQFD
KIEQFCVTSPDDNASYEMLETMIHNAEEFYQTLGLTYQVISIVSGAMNDA
ASKKYDLEAWFPGASGGKGEYRELVSASNCTDYQSRKLETRCGIKKMGDT
NKRYVHMLNSTLCATTRTICCILESYQTESGITVPEVLRPLMGMDEIPFV
RDAPKIKVKGAKKK*
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mRNA from alignment at tig00000016_pilon:38175..39569-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10186.t1 ID=Ggra10186.t1|Name=Ggra10186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000016_pilon:38175..39569- (Gracilaria gracilis GNS1m male)
ATGTTGGATATAAACCTTTTTCGCGAGGACCGCGGTGGAAATCCTGAATT
GGTGAGGGAAAGTCAGAGGAGAAGATACAAGAAGGAAAGTCTTGTGGATG
ACGTAATCAAGTGGGATAAAGAATGGCGATCCGTCCGATACGATCTAGAC
TGCATCTCAAAGAAGCGAAACGAACTCAACGGACAAATGAAAGAAATTAA
GATCAAAGGAAGAAAGCCAGAGACCAACATAGACCCAGACGGTTCGAAAG
AAGCGAAGATCAAGCAAGAAAAAGAAATTCTGGCCAAAGACGAGGCCCAA
CTCAAAGAACGAATCACAGTTATTGAAAAAGAGCGCGACACTGTCCTGAA
ATCCATCGGAAACGTGCTTCATCACACCGTGCCCGTGTTCGATGACGAAG
AGCACAATCGCGTCGAGCGCGTATGGCCGGAAACAGGCGAACAACCGCCA
GCTCCTGGCAAGGGACTCACGCACGTTGATCTACTATATATGATTGGTGG
GGTGGAGTACACCAGGGGAGTCACCTGTGCTGGTAGCAGAGGTTACTATC
TCATGGGACCGGCCGTGATGCTTAACATGGCTATCATTCAATACAGTCTA
CGTTTTCTGAGCGAGCGAGGTTACACTGCGATTCAACCACCGTATTTCAT
GGAAAAGGATCAAATGGCGAAGTGCGCACAGCTTGACGATTTCGACGAAC
AGTTGTACAAGGTCACCGGAGACGGTGACAAATATCTCATCGCAACAAGT
GAACAACCGATCTGCGTGTACCACGCAGATGAATGGGTTGAAGAACGAAA
TTTACCACGCAAATTCGCAGGCTTCTCCACGAACTTTAGGAAGGAAGCTG
GCTCTCACGGACGTGATCAACTGGGCATTTTCCGCGTGCATCAATTCGAT
AAGATTGAGCAGTTTTGCGTCACGTCTCCAGATGATAACGCTTCGTACGA
AATGCTAGAGACTATGATTCACAACGCAGAGGAGTTTTATCAAACGCTTG
GACTGACATACCAGGTCATCAGCATTGTTTCGGGCGCCATGAACGATGCG
GCGTCGAAGAAATATGACTTGGAGGCTTGGTTCCCCGGCGCTAGCGGCGG
AAAAGGCGAATATCGTGAACTGGTTTCAGCTTCAAACTGCACTGATTATC
AGTCGCGGAAGCTGGAGACCAGGTGCGGAATCAAGAAGATGGGAGATACG
AACAAACGATACGTGCACATGTTGAACTCGACTCTTTGCGCGACGACGAG
AACGATCTGTTGTATTTTGGAAAGTTATCAAACAGAGAGCGGAATCACAG
TACCGGAAGTGTTGCGCCCTTTGATGGGAATGGATGAGATTCCGTTTGTA
CGAGATGCGCCAAAGATCAAGGTGAAGGGCGCCAAGAAGAAGTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:38175..39569-

>Ggra10186.t1 ID=Ggra10186.t1|Name=Ggra10186.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00000016_pilon:38175..39569- (Gracilaria gracilis GNS1m male)
ATGTTGGATATAAACCTTTTTCGCGAGGACCGCGGTGGAAATCCTGAATT
GGTGAGGGAAAGTCAGAGGAGAAGATACAAGAAGGAAAGTCTTGTGGATG
ACGTAATCAAGTGGGATAAAGAATGGCGATCCGTCCGATACGATCTAGAC
TGCATCTCAAAGAAGCGAAACGAACTCAACGGACAAATGAAAGAAATTAA
GATCAAAGGAAGAAAGCCAGAGACCAACATAGACCCAGACGGTTCGAAAG
AAGCGAAGATCAAGCAAGAAAAAGAAATTCTGGCCAAAGACGAGGCCCAA
CTCAAAGAACGAATCACAGTTATTGAAAAAGAGCGCGACACTGTCCTGAA
ATCCATCGGAAACGTGCTTCATCACACCGTGCCCGTGTTCGATGACGAAG
AGCACAATCGCGTCGAGCGCGTATGGCCGGAAACAGGCGAACAACCGCCA
GCTCCTGGCAAGGGACTCACGCACGTTGATCTACTATATATGATTGGTGG
GGTGGAGTACACCAGGGGAGTCACCTGTGCTGGTAGCAGAGGTTACTATC
TCATGGGACCGGCCGTGATGCTTAACATGGCTATCATTCAATACAGTCTA
CGTTTTCTGAGCGAGCGAGGTTACACTGCGATTCAACCACCGTATTTCAT
GGAAAAGGATCAAATGGCGAAGTGCGCACAGCTTGACGATTTCGACGAAC
AGTTGTACAAGGTCACCGGAGACGGTGACAAATATCTCATCGCAACAAGT
GAACAACCGATCTGCGTGTACCACGCAGATGAATGGGTTGAAGAACGAAA
TTTACCACGCAAATTCGCAGGCTTCTCCACGAACTTTAGGAAGGAAGCTG
GCTCTCACGGACGTGATCAACTGGGCATTTTCCGCGTGCATCAATTCGAT
AAGATTGAGCAGTTTTGCGTCACGTCTCCAGATGATAACGCTTCGTACGA
AATGCTAGAGACTATGATTCACAACGCAGAGGAGTTTTATCAAACGCTTG
GACTGACATACCAGGTCATCAGCATTGTTTCGGGCGCCATGAACGATGCG
GCGTCGAAGAAATATGACTTGGAGGCTTGGTTCCCCGGCGCTAGCGGCGG
AAAAGGCGAATATCGTGAACTGGTTTCAGCTTCAAACTGCACTGATTATC
AGTCGCGGAAGCTGGAGACCAGGTGCGGAATCAAGAAGATGGGAGATACG
AACAAACGATACGTGCACATGTTGAACTCGACTCTTTGCGCGACGACGAG
AACGATCTGTTGTATTTTGGAAAGTTATCAAACAGAGAGCGGAATCACAG
TACCGGAAGTGTTGCGCCCTTTGATGGGAATGGATGAGATTCCGTTTGTA
CGAGATGCGCCAAAGATCAAGGTGAAGGGCGCCAAGAAGAAGTGA
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