Ggra10181.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10181.t1
Unique NameGgra10181.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length91
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:27514..28075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10181Ggra10181Gracilaria gracilis GNS1m malegenetig00000016_pilon 27514..28075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10181.t1Ggra10181.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 27514..28075 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10181.t1.start1Ggra10181.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 27514..27516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10181.t1.CDS1Ggra10181.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 27514..27740 +
Ggra10181.t1.CDS2Ggra10181.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 27841..27843 +
Ggra10181.t1.CDS3Ggra10181.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000016_pilon 28033..28075 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10181.t1.exon1Ggra10181.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 27514..27740 +
Ggra10181.t1.exon2Ggra10181.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 27841..27843 +
Ggra10181.t1.exon3Ggra10181.t1.exon3Gracilaria gracilis GNS1m maleexontig00000016_pilon 28033..28075 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10181.t1.intron1Ggra10181.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 27741..27840 +
Ggra10181.t1.intron2Ggra10181.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000016_pilon 27844..28032 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10181.t1.stop1Ggra10181.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 28073..28075 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10181.t1 ID=Ggra10181.t1|Name=Ggra10181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=91bp
MSRSLEVIPQPHTVKPAKNRPQPVPPLLPLPTLTFITALTAAIHARLQPN
PHVFPSSCDPLSAFFSVSMPSISTFDFMLPMCLNSNSLFR*
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spliced messenger RNA

>Ggra10181.t1 ID=Ggra10181.t1|Name=Ggra10181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp|location=Sequence derived from alignment at tig00000016_pilon:27514..28075+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGGTCGCTTGAAGTAATCCCGCAGCCTCATACGGTCAAACCAGC
CAAAAATCGCCCACAGCCTGTGCCGCCGTTACTTCCTTTACCCACCCTCA
CCTTTATCACCGCACTCACGGCCGCAATTCACGCACGACTGCAGCCGAAT
CCGCATGTTTTTCCGTCGTCGTGCGACCCGCTTTCGGCGttcttcagtgt
ttcaatgccgtccatatcaacttttgatttTATGCTGCCTATGTGTCTCA
ACTCCAACTCTTTGTTCCGCTAA
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protein sequence of Ggra10181.t1

>Ggra10181.t1 ID=Ggra10181.t1|Name=Ggra10181.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=91bp
MSRSLEVIPQPHTVKPAKNRPQPVPPLLPLPTLTFITALTAAIHARLQPN
PHVFPSSCDPLSAFFSVSMPSISTFDFMLPMCLNSNSLFR*
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mRNA from alignment at tig00000016_pilon:27514..28075+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10181.t1 ID=Ggra10181.t1|Name=Ggra10181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=562bp|location=Sequence derived from alignment at tig00000016_pilon:27514..28075+ (Gracilaria gracilis GNS1m male)
ATGTCCAGGTCGCTTGAAGTAATCCCGCAGCCTCATACGGTCAAACCAGC
CAAAAATCGCCCACAGCCTGTGCCGCCGTTACTTCCTTTACCCACCCTCA
CCTTTATCACCGCACTCACGGCCGCAATTCACGCACGACTGCAGCCGAAT
CCGCATGTTTTTCCGTCGTCGTGCGACCCGCTTTCGGCGttcttcagtgt
ttcaatgccgtccatatcaacttttgagtatgtggaacgcttagtcagat
atacagactgctcaaactccgcctttgtactaatgctcatttatatcgat
cgagttcttcaatccgaccgtattcagtttgtgcctcattccatgcaccg
aatgctgcttgctgctctcaccattgccgtcaagaacactgatgatgttg
cagcttcgtcaacgcactatgccagggtgggtggcgttcctactgttgct
gaaatgaaccgccttgaagttttattcctcaagaacatgcaataCAGAGG
GTTTGTTCCTCCTGAGCAGTATGCTGCCTATGTGTCTCAACTCCAACTCT
TTGTTCCGCTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:27514..28075+

>Ggra10181.t1 ID=Ggra10181.t1|Name=Ggra10181.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=273bp|location=Sequence derived from alignment at tig00000016_pilon:27514..28075+ (Gracilaria gracilis GNS1m male)
ATGTCCAGGTCGCTTGAAGTAATCCCGCAGCCTCATACGGTCAAACCAGC
CAAAAATCGCCCACAGCCTGTGCCGCCGTTACTTCCTTTACCCACCCTCA
CCTTTATCACCGCACTCACGGCCGCAATTCACGCACGACTGCAGCCGAAT
CCGCATGTTTTTCCGTCGTCGTGCGACCCGCTTTCGGCGttcttcagtgt
ttcaatgccgtccatatcaacttttgatttTATGCTGCCTATGTGTCTCA
ACTCCAACTCTTTGTTCCGCTAA
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