Ggra1018.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1018.t1
Unique NameGgra1018.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:589064..590152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1018Ggra1018Gracilaria gracilis GNS1m malegenetig00000027_pilon 589064..590152 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1018.t1.start1Ggra1018.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 589064..589066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1018.t1.CDS1Ggra1018.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 589064..590152 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1018.t1.exon1Ggra1018.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 589064..590152 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1018.t1.stop1Ggra1018.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 590150..590152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1018.t1Ggra1018.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 589064..590152 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1018.t1 ID=Ggra1018.t1|Name=Ggra1018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp
MKRVFQPAAKDNAIDINLGEEWSLLFTWDPMKEVIYPDEIGRITVADNVA
VAAQVPWILMGTTARLLQAAAACDSKSSKSGTFAAAIHSWNEYIQGSFDS
FVSVMDSENGPVWLEGYTNHYVTFGFLDYLTRSLFARDSDEDEVRPLHHE
VLMPTDVEFKQEILKASQDATEDIQLIAEELFGVGLAQDNSRGSGDYEKA
AFVISGGFTNTFVGLAIEPFVCAVAKRRGYWRTRVWCRNKKMQIVFTSHG
NSPRIAQRSTNLTDYDAVGLVRPGMDNYDFVLDISREISEEEAHSPVLWK
DMKDTFSRVETTSRLSDAKLPWGGAEAWLIDMTRCVGTNGTDQGVISYFD
VEPIQSECILDK*
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spliced messenger RNA

>Ggra1018.t1 ID=Ggra1018.t1|Name=Ggra1018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000027_pilon:589064..590152+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGGGTCTTTCAACCCGCTGCTAAGGATAACGCTATAGACATAAA
CTTGGGCGAAGAATGGTCATTATTGTTTACGTGGGATCCGATGAAGGAAG
TTATTTATCCTGATGAAATTGGGAGAATAACGGTAGCAGATAATGTTGCA
GTCGCCGCTCAAGTGCCTTGGATTCTCATGGGCACAACGGCTCGTCTTCT
CCAGGCCGCAGCTGCTTGTGATTCTAAGTCATCAAAGAGTGGCACCTTTG
CCGCTGCGATTCACAGCTGGAATGAATATATACAAGGATCTTTCGACTCC
TTCGTTTCTGTCATGGACTCGGAAAATGGGCCAGTGTGGCTGGAAGGGTA
CACCAATCATTATGTGACCTTCGGGTTTCTCGATTACTTAACTCGTTCAC
TCTTCGCTCGCGATAGTGACGAAGATGAAGTCCGCCCGCTCCACCATGAA
GTGCTCATGCCCACTGATGTTGAATTCAAGCAGGAGATACTGAAAGCCTC
ACAGGATGCAACTGAAGACATTCAGCTCATCGCGGAAGAACTGTTTGGTG
TGGGTCTAGCACAGGATAATAGTAGGGGGTCGGGCGACTACGAAAAGGCG
GCCTTTGTGATTAGCGGTGGGTTTACGAATACTTTCGTGGGCCTTGCAAT
TGAGCCTTTTGTTTGTGCAGTTGCAAAACGGAGAGGATATTGGAGAACAC
GAGTGTGGTGTAGGAATAAGAAGATGCAAATTGTTTTCACAAGCCATGGA
AACTCTCCAAGGATCGCACAGAGAAGTACCAACCTTACAGATTATGACGC
AGTTGGGCTTGTTCGTCCTGGAATGGATAATTATGACTTTGTTCTGGACA
TCTCAAGAGAAATCAGCGAGGAAGAAGCGCATTCACCAGTTTTATGGAAA
GATATGAAGGATACTTTCTCTCGAGTTGAGACAACGTCGCGGCTTTCAGA
TGCCAAGCTGCCATGGGGCGGAGCTGAAGCTTGGTTGATCGATATGACCC
GATGTGTTGGTACCAACGGTACTGACCAAGGCGTCATTTCTTACTTTGAC
GTAGAACCAATCCAATCCGagtgtatattggacaagtga
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protein sequence of Ggra1018.t1

>Ggra1018.t1 ID=Ggra1018.t1|Name=Ggra1018.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=363bp
MKRVFQPAAKDNAIDINLGEEWSLLFTWDPMKEVIYPDEIGRITVADNVA
VAAQVPWILMGTTARLLQAAAACDSKSSKSGTFAAAIHSWNEYIQGSFDS
FVSVMDSENGPVWLEGYTNHYVTFGFLDYLTRSLFARDSDEDEVRPLHHE
VLMPTDVEFKQEILKASQDATEDIQLIAEELFGVGLAQDNSRGSGDYEKA
AFVISGGFTNTFVGLAIEPFVCAVAKRRGYWRTRVWCRNKKMQIVFTSHG
NSPRIAQRSTNLTDYDAVGLVRPGMDNYDFVLDISREISEEEAHSPVLWK
DMKDTFSRVETTSRLSDAKLPWGGAEAWLIDMTRCVGTNGTDQGVISYFD
VEPIQSECILDK*
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mRNA from alignment at tig00000027_pilon:589064..590152+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1018.t1 ID=Ggra1018.t1|Name=Ggra1018.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000027_pilon:589064..590152+ (Gracilaria gracilis GNS1m male)
ATGAAGAGGGTCTTTCAACCCGCTGCTAAGGATAACGCTATAGACATAAA
CTTGGGCGAAGAATGGTCATTATTGTTTACGTGGGATCCGATGAAGGAAG
TTATTTATCCTGATGAAATTGGGAGAATAACGGTAGCAGATAATGTTGCA
GTCGCCGCTCAAGTGCCTTGGATTCTCATGGGCACAACGGCTCGTCTTCT
CCAGGCCGCAGCTGCTTGTGATTCTAAGTCATCAAAGAGTGGCACCTTTG
CCGCTGCGATTCACAGCTGGAATGAATATATACAAGGATCTTTCGACTCC
TTCGTTTCTGTCATGGACTCGGAAAATGGGCCAGTGTGGCTGGAAGGGTA
CACCAATCATTATGTGACCTTCGGGTTTCTCGATTACTTAACTCGTTCAC
TCTTCGCTCGCGATAGTGACGAAGATGAAGTCCGCCCGCTCCACCATGAA
GTGCTCATGCCCACTGATGTTGAATTCAAGCAGGAGATACTGAAAGCCTC
ACAGGATGCAACTGAAGACATTCAGCTCATCGCGGAAGAACTGTTTGGTG
TGGGTCTAGCACAGGATAATAGTAGGGGGTCGGGCGACTACGAAAAGGCG
GCCTTTGTGATTAGCGGTGGGTTTACGAATACTTTCGTGGGCCTTGCAAT
TGAGCCTTTTGTTTGTGCAGTTGCAAAACGGAGAGGATATTGGAGAACAC
GAGTGTGGTGTAGGAATAAGAAGATGCAAATTGTTTTCACAAGCCATGGA
AACTCTCCAAGGATCGCACAGAGAAGTACCAACCTTACAGATTATGACGC
AGTTGGGCTTGTTCGTCCTGGAATGGATAATTATGACTTTGTTCTGGACA
TCTCAAGAGAAATCAGCGAGGAAGAAGCGCATTCACCAGTTTTATGGAAA
GATATGAAGGATACTTTCTCTCGAGTTGAGACAACGTCGCGGCTTTCAGA
TGCCAAGCTGCCATGGGGCGGAGCTGAAGCTTGGTTGATCGATATGACCC
GATGTGTTGGTACCAACGGTACTGACCAAGGCGTCATTTCTTACTTTGAC
GTAGAACCAATCCAATCCGagtgtatattggacaagtga
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Coding sequence (CDS) from alignment at tig00000027_pilon:589064..590152+

>Ggra1018.t1 ID=Ggra1018.t1|Name=Ggra1018.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00000027_pilon:589064..590152+ (Gracilaria gracilis GNS1m male)
ATGAAGAGGGTCTTTCAACCCGCTGCTAAGGATAACGCTATAGACATAAA
CTTGGGCGAAGAATGGTCATTATTGTTTACGTGGGATCCGATGAAGGAAG
TTATTTATCCTGATGAAATTGGGAGAATAACGGTAGCAGATAATGTTGCA
GTCGCCGCTCAAGTGCCTTGGATTCTCATGGGCACAACGGCTCGTCTTCT
CCAGGCCGCAGCTGCTTGTGATTCTAAGTCATCAAAGAGTGGCACCTTTG
CCGCTGCGATTCACAGCTGGAATGAATATATACAAGGATCTTTCGACTCC
TTCGTTTCTGTCATGGACTCGGAAAATGGGCCAGTGTGGCTGGAAGGGTA
CACCAATCATTATGTGACCTTCGGGTTTCTCGATTACTTAACTCGTTCAC
TCTTCGCTCGCGATAGTGACGAAGATGAAGTCCGCCCGCTCCACCATGAA
GTGCTCATGCCCACTGATGTTGAATTCAAGCAGGAGATACTGAAAGCCTC
ACAGGATGCAACTGAAGACATTCAGCTCATCGCGGAAGAACTGTTTGGTG
TGGGTCTAGCACAGGATAATAGTAGGGGGTCGGGCGACTACGAAAAGGCG
GCCTTTGTGATTAGCGGTGGGTTTACGAATACTTTCGTGGGCCTTGCAAT
TGAGCCTTTTGTTTGTGCAGTTGCAAAACGGAGAGGATATTGGAGAACAC
GAGTGTGGTGTAGGAATAAGAAGATGCAAATTGTTTTCACAAGCCATGGA
AACTCTCCAAGGATCGCACAGAGAAGTACCAACCTTACAGATTATGACGC
AGTTGGGCTTGTTCGTCCTGGAATGGATAATTATGACTTTGTTCTGGACA
TCTCAAGAGAAATCAGCGAGGAAGAAGCGCATTCACCAGTTTTATGGAAA
GATATGAAGGATACTTTCTCTCGAGTTGAGACAACGTCGCGGCTTTCAGA
TGCCAAGCTGCCATGGGGCGGAGCTGAAGCTTGGTTGATCGATATGACCC
GATGTGTTGGTACCAACGGTACTGACCAAGGCGTCATTTCTTACTTTGAC
GTAGAACCAATCCAATCCGagtgtatattggacaagtga
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