Ggra10178.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10178.t1
Unique Name	Ggra10178.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	554

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:13123..15768 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10178	Ggra10178	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 13123..15768 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10178.t1	Ggra10178.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 13123..15768 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10178.t1.start1	Ggra10178.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 13123..13125 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10178.t1.CDS1	Ggra10178.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 13123..13176 +
Ggra10178.t1.CDS2	Ggra10178.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 14035..14048 +
Ggra10178.t1.CDS3	Ggra10178.t1.CDS3	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 14175..15768 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10178.t1.exon1	Ggra10178.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 13123..13176 +
Ggra10178.t1.exon2	Ggra10178.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 14035..14048 +
Ggra10178.t1.exon3	Ggra10178.t1.exon3	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 14175..15768 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10178.t1.intron1	Ggra10178.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000016_pilon 13177..14034 +
Ggra10178.t1.intron2	Ggra10178.t1.intron2	Gracilaria gracilis GNS1m male	intron	tig00000016_pilon 14049..14174 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10178.t1.stop1	Ggra10178.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 15766..15768 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:13123..15768+
coding sequence from alignment at tig00000016_pilon:13123..15768+

mRNA sequence

>Ggra10178.t1 ID=Ggra10178.t1|Name=Ggra10178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=554bp
MRLMTTVNVSPPPPKPTEHSKRDMTTIPIDSRFVNAAVYIVVDVFVFAVL
VVALISFQGWHTRRALLRGERVSLCEFRFSPLAGGVVADGHRFSTLLVGV
HFILLGILFALALGINGRTGKATRLITRQYISNLDPPTAVIVSDDRVFPQ
IMAGCSEFKNERLTYYPVAFDQERTPSIPVSTRHLRQSLNGNIGTAVNSG
SVVCQRYEGAKPLLTVARCGTDPHSCCNLSLSPRVRLDLQRGQGGPEVWR
KNEVLRSSDSVILRRNVEPVSYDMSSVAYDRLICLQFMSESDTQSSTKSR
MNCMLGKWNDNGAKFTFRLGNATFPDSLQENVFDVGRATSMQFTAFSVET
EIKWNGDAEVILSNGLHSIGGNMVPARLFLNTLVSRSSLALRVTDEAIYE
EYNINVTDVSTPTVVGYSILVGLAVLILLSKLISRWWDSFDNEIRPCVPD
ITTYDGLLTLLKGDETRRCARRTERANVEFGIASVGTNGTIYSLGPVEEG
MRVVKMPPEGLLRWHRSVEDFMAATKDDETLETASTNSVNVTVKNIEPER
ERH*

spliced messenger RNA

>Ggra10178.t1 ID=Ggra10178.t1|Name=Ggra10178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000016_pilon:13123..15768+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTTAATGACTACGGTTAACGTTAGCCCCCCTCCCCCTAAACCTAC
GGAGCACTCAAAACGCGACATGACCACGATTCCCATAGATTCTCGATTCG
TCAATGCCGCAGTTTACATTGTTGTTGATGTCTTCGTCTTTGCCGTTTTG
GTGGTAGCGCTGATCTCCTTCCAAGGCTGGCATACTAGACGAGCCCTTCT
TCGGGGCGAACGAGTTTCGTTATGTGAGTTTCGATTCTCGCCTCTCGCGG
GAGGGGTAGTCGCCGATGGTCACCGTTTCTCAACTCTTCTTGTAGGTGTT
CACTTTATACTTCTTGGAATTTTGTTTGCCTTAGCCTTGGGCATCAACGG
CAGAACAGGTAAGGCAACACGCCTTATAACCCGCCAATACATATCTAATT
TGGATCCACCAACTGCGGTCATTGTCTCTGATGATCGAGTTTTCCCGCAG
ATCATGGCTGGTTGCAGTGAGTTCAAGAATGAAAGGCTAACTTACTATCC
TGTCGCCTTTGACCAAGAACGGACACCTTCCATCCCGGTGTCTACCCGTC
ATTTGAGGCAGAGTCTCAACGGCAACATCGGGACAGCTGTTAACTCCGGA
AGCGTGGTGTGCCAACGGTACGAAGGTGCCAAACCACTGCTCACCGTGGC
ACGGTGTGGAACTGACCCTCATTCCTGTTGCAATTTGAGTCTTTCTCCTC
GAGTACGTCTTGATCTTCAGAGAGGGCAAGGCGGACCCGAAGTTTGGCGT
AAGAACGAGGTGCTACGAAGCAGTGACTCGGTTATTCTGAGAAGAAATGT
GGAACCTGTATCATATGATATGTCAAGCGTCGCATACGATCGATTAATTT
GTCTGCAGTTTATGTCAGAATCCGATACACAATCTTCAACAAAGTCTCGA
ATGAACTGCATGTTGGGGAAATGGAATGACAACGGCGCCAAGTTTACTTT
TCGACTTGGGAATGCAACGTTTCCGGATTCGCTGCAAGAGAATGTATTCG
ACGTTGGTCGAGCTACAAGCATGCAGTTCACGGCGTTTTCGGTTGAGACA
GAGATTAAATGGAATGGTGATGCTGAGGTCATTCTCAGCAACGGTTTGCA
TTCAATAGGAGGAAACATGGTACCGGCTCGGTTGTTCTTAAACACATTGG
TTAGTCGTTCATCACTTGCCCTGAGGGTAACGGACGAAGCAATCTACGAG
GAATATAATATTAACGTAACGGACGTGAGCACTCCAACAGTAGTCGGTTA
CTCTATTCTTGTTGGACTGGCTGTGTTGATTTTGCTCTCCAAGCTAATAA
GCCGTTGGTGGGATTCTTTTGACAATGAGATACGTCCATGTGTACCGGAT
ATAACGACATATGATGGTTTATTGACGCTACTGAAAGGCGATGAAACACG
CCGATGTGCAAGGCGAACTGAACGTGCCAATGTAGAATTCGGAATTGCGT
CGGTGGGTACCAACGGTACTATATACAGCTTGGGCCCTGTGGAAGAAGGC
ATGAGGGTGGTGAAAATGCCGCCAGAAGGCCTTCTCAGATGGCACCGATC
TGTCGAAGACTTTATGGCAGCTACGAAAGACGACGAAACGCTCGAGACAG
CTTCAACCAACTCTGTGAATGTTACGGTGAAAAATATTGAACCTGAGCGC
GAGAGACACTGA

protein sequence of Ggra10178.t1

>Ggra10178.t1 ID=Ggra10178.t1|Name=Ggra10178.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=554bp
MRLMTTVNVSPPPPKPTEHSKRDMTTIPIDSRFVNAAVYIVVDVFVFAVL
VVALISFQGWHTRRALLRGERVSLCEFRFSPLAGGVVADGHRFSTLLVGV
HFILLGILFALALGINGRTGKATRLITRQYISNLDPPTAVIVSDDRVFPQ
IMAGCSEFKNERLTYYPVAFDQERTPSIPVSTRHLRQSLNGNIGTAVNSG
SVVCQRYEGAKPLLTVARCGTDPHSCCNLSLSPRVRLDLQRGQGGPEVWR
KNEVLRSSDSVILRRNVEPVSYDMSSVAYDRLICLQFMSESDTQSSTKSR
MNCMLGKWNDNGAKFTFRLGNATFPDSLQENVFDVGRATSMQFTAFSVET
EIKWNGDAEVILSNGLHSIGGNMVPARLFLNTLVSRSSLALRVTDEAIYE
EYNINVTDVSTPTVVGYSILVGLAVLILLSKLISRWWDSFDNEIRPCVPD
ITTYDGLLTLLKGDETRRCARRTERANVEFGIASVGTNGTIYSLGPVEEG
MRVVKMPPEGLLRWHRSVEDFMAATKDDETLETASTNSVNVTVKNIEPER
ERH*

mRNA from alignment at tig00000016_pilon:13123..15768+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10178.t1 ID=Ggra10178.t1|Name=Ggra10178.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2646bp|location=Sequence derived from alignment at tig00000016_pilon:13123..15768+ (Gracilaria gracilis GNS1m male)
ATGCGTTTAATGACTACGGTTAACGTTAGCCCCCCTCCCCCTAAACCTAC
GGAGGTATGTATATATCAATAATCTTTGTAGCTCATCATGTTATGATAAC
GCCCAGACAGGAATAGAGAGGCATTCGTCGTAAGCCGCTGGGCAGCTGAA
TGAATCAATTGCCTTCAACTCGTGTTGACCATCTTATGACGACGTCCTTC
ttctttttcttctttactgtggtcaaccgcccctgattccgaggtggccg
gagaattatctatagctcgtatctaaagctagttctctcgcttaaagaag
gccaaaaaacttaatggcagttgatcatcgctatcGTCGTCGAGATGGGA
AGGGCAAAGGTACATTCACAAGGATTGTATTGTACAAGTTGGCTGTTCTT
TTGGAATCTTTCCGTCGTTGATACGAAGGTAGATAGTTATCTACCAAGGG
TGTGGTTCTTCTTTTGGGCTTCAGTTCTTCATTTCTCTCTTGTGCACCCA
TTCATGCAGTAGTACAGTAGTACGGGGTTGAAAAGATGAGGGGAGTATAT
ATTGTGTAGCAGCAGTATGCGAATAACGCAGACCATTTAATAAAttatac
cttcgtgataaccccgtgagtggagcacggctactgatttgtggtttgtg
gctacggtgcaaagataagtgttataggttgttggggttcttagcatacc
cccgcgtacgagtaattcacgtacgcgtttcataaatgagcgagagagag
aTACCTTCGTGTATCTTGGGCAGGGCAGCCTGGCTCGAAGCCAGTTGGCT
CCCCCTCATCGCAGTTTCTCCGCTAGCCTTACTACTCCCATACGGGTTTG
TTGCCCTGTAGCTTTCCCACGTCATCAGCCATGCGAATGACACTCCAATA
TTCATATAAGAGCACTCAAAACGCGAGTACGTTCCGATGTGATTCGCACA
ACCTCCTCTAACGTCACGATGCATTGAGCCTTGGCATTCGAAAGACGACT
CTCTCACTCACACAACACATGTGCGTTATATGACACTTACCCTCCCTTAA
AGCATGACCACGATTCCCATAGATTCTCGATTCGTCAATGCCGCAGTTTA
CATTGTTGTTGATGTCTTCGTCTTTGCCGTTTTGGTGGTAGCGCTGATCT
CCTTCCAAGGCTGGCATACTAGACGAGCCCTTCTTCGGGGCGAACGAGTT
TCGTTATGTGAGTTTCGATTCTCGCCTCTCGCGGGAGGGGTAGTCGCCGA
TGGTCACCGTTTCTCAACTCTTCTTGTAGGTGTTCACTTTATACTTCTTG
GAATTTTGTTTGCCTTAGCCTTGGGCATCAACGGCAGAACAGGTAAGGCA
ACACGCCTTATAACCCGCCAATACATATCTAATTTGGATCCACCAACTGC
GGTCATTGTCTCTGATGATCGAGTTTTCCCGCAGATCATGGCTGGTTGCA
GTGAGTTCAAGAATGAAAGGCTAACTTACTATCCTGTCGCCTTTGACCAA
GAACGGACACCTTCCATCCCGGTGTCTACCCGTCATTTGAGGCAGAGTCT
CAACGGCAACATCGGGACAGCTGTTAACTCCGGAAGCGTGGTGTGCCAAC
GGTACGAAGGTGCCAAACCACTGCTCACCGTGGCACGGTGTGGAACTGAC
CCTCATTCCTGTTGCAATTTGAGTCTTTCTCCTCGAGTACGTCTTGATCT
TCAGAGAGGGCAAGGCGGACCCGAAGTTTGGCGTAAGAACGAGGTGCTAC
GAAGCAGTGACTCGGTTATTCTGAGAAGAAATGTGGAACCTGTATCATAT
GATATGTCAAGCGTCGCATACGATCGATTAATTTGTCTGCAGTTTATGTC
AGAATCCGATACACAATCTTCAACAAAGTCTCGAATGAACTGCATGTTGG
GGAAATGGAATGACAACGGCGCCAAGTTTACTTTTCGACTTGGGAATGCA
ACGTTTCCGGATTCGCTGCAAGAGAATGTATTCGACGTTGGTCGAGCTAC
AAGCATGCAGTTCACGGCGTTTTCGGTTGAGACAGAGATTAAATGGAATG
GTGATGCTGAGGTCATTCTCAGCAACGGTTTGCATTCAATAGGAGGAAAC
ATGGTACCGGCTCGGTTGTTCTTAAACACATTGGTTAGTCGTTCATCACT
TGCCCTGAGGGTAACGGACGAAGCAATCTACGAGGAATATAATATTAACG
TAACGGACGTGAGCACTCCAACAGTAGTCGGTTACTCTATTCTTGTTGGA
CTGGCTGTGTTGATTTTGCTCTCCAAGCTAATAAGCCGTTGGTGGGATTC
TTTTGACAATGAGATACGTCCATGTGTACCGGATATAACGACATATGATG
GTTTATTGACGCTACTGAAAGGCGATGAAACACGCCGATGTGCAAGGCGA
ACTGAACGTGCCAATGTAGAATTCGGAATTGCGTCGGTGGGTACCAACGG
TACTATATACAGCTTGGGCCCTGTGGAAGAAGGCATGAGGGTGGTGAAAA
TGCCGCCAGAAGGCCTTCTCAGATGGCACCGATCTGTCGAAGACTTTATG
GCAGCTACGAAAGACGACGAAACGCTCGAGACAGCTTCAACCAACTCTGT
GAATGTTACGGTGAAAAATATTGAACCTGAGCGCGAGAGACACTGA

Coding sequence (CDS) from alignment at tig00000016_pilon:13123..15768+

>Ggra10178.t1 ID=Ggra10178.t1|Name=Ggra10178.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1662bp|location=Sequence derived from alignment at tig00000016_pilon:13123..15768+ (Gracilaria gracilis GNS1m male)
ATGCGTTTAATGACTACGGTTAACGTTAGCCCCCCTCCCCCTAAACCTAC
GGAGCACTCAAAACGCGACATGACCACGATTCCCATAGATTCTCGATTCG
TCAATGCCGCAGTTTACATTGTTGTTGATGTCTTCGTCTTTGCCGTTTTG
GTGGTAGCGCTGATCTCCTTCCAAGGCTGGCATACTAGACGAGCCCTTCT
TCGGGGCGAACGAGTTTCGTTATGTGAGTTTCGATTCTCGCCTCTCGCGG
GAGGGGTAGTCGCCGATGGTCACCGTTTCTCAACTCTTCTTGTAGGTGTT
CACTTTATACTTCTTGGAATTTTGTTTGCCTTAGCCTTGGGCATCAACGG
CAGAACAGGTAAGGCAACACGCCTTATAACCCGCCAATACATATCTAATT
TGGATCCACCAACTGCGGTCATTGTCTCTGATGATCGAGTTTTCCCGCAG
ATCATGGCTGGTTGCAGTGAGTTCAAGAATGAAAGGCTAACTTACTATCC
TGTCGCCTTTGACCAAGAACGGACACCTTCCATCCCGGTGTCTACCCGTC
ATTTGAGGCAGAGTCTCAACGGCAACATCGGGACAGCTGTTAACTCCGGA
AGCGTGGTGTGCCAACGGTACGAAGGTGCCAAACCACTGCTCACCGTGGC
ACGGTGTGGAACTGACCCTCATTCCTGTTGCAATTTGAGTCTTTCTCCTC
GAGTACGTCTTGATCTTCAGAGAGGGCAAGGCGGACCCGAAGTTTGGCGT
AAGAACGAGGTGCTACGAAGCAGTGACTCGGTTATTCTGAGAAGAAATGT
GGAACCTGTATCATATGATATGTCAAGCGTCGCATACGATCGATTAATTT
GTCTGCAGTTTATGTCAGAATCCGATACACAATCTTCAACAAAGTCTCGA
ATGAACTGCATGTTGGGGAAATGGAATGACAACGGCGCCAAGTTTACTTT
TCGACTTGGGAATGCAACGTTTCCGGATTCGCTGCAAGAGAATGTATTCG
ACGTTGGTCGAGCTACAAGCATGCAGTTCACGGCGTTTTCGGTTGAGACA
GAGATTAAATGGAATGGTGATGCTGAGGTCATTCTCAGCAACGGTTTGCA
TTCAATAGGAGGAAACATGGTACCGGCTCGGTTGTTCTTAAACACATTGG
TTAGTCGTTCATCACTTGCCCTGAGGGTAACGGACGAAGCAATCTACGAG
GAATATAATATTAACGTAACGGACGTGAGCACTCCAACAGTAGTCGGTTA
CTCTATTCTTGTTGGACTGGCTGTGTTGATTTTGCTCTCCAAGCTAATAA
GCCGTTGGTGGGATTCTTTTGACAATGAGATACGTCCATGTGTACCGGAT
ATAACGACATATGATGGTTTATTGACGCTACTGAAAGGCGATGAAACACG
CCGATGTGCAAGGCGAACTGAACGTGCCAATGTAGAATTCGGAATTGCGT
CGGTGGGTACCAACGGTACTATATACAGCTTGGGCCCTGTGGAAGAAGGC
ATGAGGGTGGTGAAAATGCCGCCAGAAGGCCTTCTCAGATGGCACCGATC
TGTCGAAGACTTTATGGCAGCTACGAAAGACGACGAAACGCTCGAGACAG
CTTCAACCAACTCTGTGAATGTTACGGTGAAAAATATTGAACCTGAGCGC
GAGAGACACTGA