Ggra1017.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1017.t1
Unique Name	Ggra1017.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:587661..589055 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1017	Ggra1017	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 587661..589055 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1017.t1.start1	Ggra1017.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 587661..587663 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1017.t1.CDS1	Ggra1017.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 587661..589055 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1017.t1.exon1	Ggra1017.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 587661..589055 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1017.t1.stop1	Ggra1017.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 589053..589055 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1017.t1	Ggra1017.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 587661..589055 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:587661..589055+
coding sequence from alignment at tig00000027_pilon:587661..589055+

mRNA sequence

>Ggra1017.t1 ID=Ggra1017.t1|Name=Ggra1017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp
MERQQAFQIWNNQKSFAEKKKFSILDYPGSSLHILRICADLGRKGILCAR
QGLSRPISPDAENVRQLISDWERVPKSNKCCFEGTVDDLLNMKRVTVIAI
SYRHEEKTRWGKHGRNKVSKMSDRNQKLLEKAIDNLKHYKGDLDMLPEHS
QILLWCDQILSARLKGKENELGWYNAGLIPYAYFPVLALSTHINQSNNEL
EKRVWIKAERSLGRMGRGLVRADQLSELFDPLASFPYCAAKDDNAERNEF
GDGASPKELLKKVSLMVISGYLPEPDTKDFWYEDYGKMKKWAIHVSCRSD
RFEHAAFFDKVTSVDFTEVLWNMYKFSRVPEGSGLAEREYFVRDKYFYLK
VTAWNPWISGLWPAGTRSVFHYMGKLGHVGQFTWWICRPSGNIFGCMVSH
TKLADLEKLGLVTPADHRHIVEKMYKEMDPPTIVVAIKKSQAIPCSGAKA
TLRFVTYTYIRKIT*

spliced messenger RNA

>Ggra1017.t1 ID=Ggra1017.t1|Name=Ggra1017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000027_pilon:587661..589055+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGGCAACAAGCGTTTCAGATATGGAATAATCAGAAGAGTTTTGC
GGAGAAGAAGAAGTTCAGCATACTGGACTATCCCGGCTCCTCACTACACA
TCCTCCGAATATGTGCTGACTTGGGCAGAAAGGGCATTCTATGCGCCCGT
CAGGGACTTTCGCGTCCAATATCGCCAGATGCAGAGAACGTGCGCCAACT
AATCAGTGACTGGGAGCGTGTTCCAAAAAGTAATAAATGCTGCTTTGAGG
GGACGGTGGACGACTTGTTAAACATGAAGAGAGTGACGGTCATTGCAATT
TCTTATAGGCATGAAGAGAAGACTCGTTGGGGCAAGCATGGGAGAAATAA
GGTTTCTAAGATGTCCGATCGTAATCAAAAGCTTCTAGAGAAAGCTATTG
ACAATCTCAAGCACTATAAGGGGGATCTGGACATGCTCCCGGAACATTCA
CAGATCCTGCTCTGGTGCGATCAGATCCTCTCGGCCCGACTGAAGGGAAA
GGAAAATGAACTCGGATGGTATAACGCAGGCCTCATTCCTTACGCATACT
TTCCAGTATTAGCTCTTTCGACGCACATAAACCAATCCAACAACGAGCTA
GAGAAAAGGGTATGGATCAAGGCTGAGAGATCCTTAGGACGAATGGGCAG
GGGGCTTGTTCGAGCAGACCAGCTCTCTGAGTTATTCGATCCATTGGCAA
GCTTTCCATATTGTGCTGCAAAAGACGACAACGCAGAAAGGAACGAGTTC
GGGGATGGCGCGTCTCCTAAAGAGCTTTTGAAGAAAGTGTCTTTGATGGT
GATCAGCGGTTACTTGCCAGAACCGGATACCAAAGACTTTTGGTACGAAG
ATTACGGCAAAATGAAAAAGTGGGCAATACATGTATCCTGCAGGTCAGAT
AGATTCGAACATGCTGCTTTCTTTGACAAAGTCACTTCCGTTGACTTCAC
GGAGGTTCTGTGGAATATGTACAAGTTTTCCCGTGTTCCAGAGGGCTCCG
GACTTGCGGAAAGAGAGTATTTTGTACGTGACAAATACTTCTACCTAAAA
GTGACTGCATGGAACCCTTGGATCTCCGGTCTTTGGCCAGCGGGTACTAG
GAGCGTTTTTCATTATATGGGCAAGCTAGGCCATGTTGGCCAATTCACTT
GGTGGATCTGTAGACCTTCCGGCAATATCTTTGGTTGCATGGTATCTCAT
ACCAAGCTTGCAGACTTGGAGAAACTAGGCCTTGTGACTCCCGCCGATCA
TCGTCATATAGTTGAAAAGATGTATAAGGAGATGGACCCACCAACAATTG
TAGTAGCCATAAAAAAGAGTCAGGCTATACCCTGTTCCGGAGCAAAGGCA
ACTCTGAGGTTTGTGACATATACGTACATTCGGAAAATAACCTGA

protein sequence of Ggra1017.t1

>Ggra1017.t1 ID=Ggra1017.t1|Name=Ggra1017.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MERQQAFQIWNNQKSFAEKKKFSILDYPGSSLHILRICADLGRKGILCAR
QGLSRPISPDAENVRQLISDWERVPKSNKCCFEGTVDDLLNMKRVTVIAI
SYRHEEKTRWGKHGRNKVSKMSDRNQKLLEKAIDNLKHYKGDLDMLPEHS
QILLWCDQILSARLKGKENELGWYNAGLIPYAYFPVLALSTHINQSNNEL
EKRVWIKAERSLGRMGRGLVRADQLSELFDPLASFPYCAAKDDNAERNEF
GDGASPKELLKKVSLMVISGYLPEPDTKDFWYEDYGKMKKWAIHVSCRSD
RFEHAAFFDKVTSVDFTEVLWNMYKFSRVPEGSGLAEREYFVRDKYFYLK
VTAWNPWISGLWPAGTRSVFHYMGKLGHVGQFTWWICRPSGNIFGCMVSH
TKLADLEKLGLVTPADHRHIVEKMYKEMDPPTIVVAIKKSQAIPCSGAKA
TLRFVTYTYIRKIT*

mRNA from alignment at tig00000027_pilon:587661..589055+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1017.t1 ID=Ggra1017.t1|Name=Ggra1017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000027_pilon:587661..589055+ (Gracilaria gracilis GNS1m male)
ATGGAAAGGCAACAAGCGTTTCAGATATGGAATAATCAGAAGAGTTTTGC
GGAGAAGAAGAAGTTCAGCATACTGGACTATCCCGGCTCCTCACTACACA
TCCTCCGAATATGTGCTGACTTGGGCAGAAAGGGCATTCTATGCGCCCGT
CAGGGACTTTCGCGTCCAATATCGCCAGATGCAGAGAACGTGCGCCAACT
AATCAGTGACTGGGAGCGTGTTCCAAAAAGTAATAAATGCTGCTTTGAGG
GGACGGTGGACGACTTGTTAAACATGAAGAGAGTGACGGTCATTGCAATT
TCTTATAGGCATGAAGAGAAGACTCGTTGGGGCAAGCATGGGAGAAATAA
GGTTTCTAAGATGTCCGATCGTAATCAAAAGCTTCTAGAGAAAGCTATTG
ACAATCTCAAGCACTATAAGGGGGATCTGGACATGCTCCCGGAACATTCA
CAGATCCTGCTCTGGTGCGATCAGATCCTCTCGGCCCGACTGAAGGGAAA
GGAAAATGAACTCGGATGGTATAACGCAGGCCTCATTCCTTACGCATACT
TTCCAGTATTAGCTCTTTCGACGCACATAAACCAATCCAACAACGAGCTA
GAGAAAAGGGTATGGATCAAGGCTGAGAGATCCTTAGGACGAATGGGCAG
GGGGCTTGTTCGAGCAGACCAGCTCTCTGAGTTATTCGATCCATTGGCAA
GCTTTCCATATTGTGCTGCAAAAGACGACAACGCAGAAAGGAACGAGTTC
GGGGATGGCGCGTCTCCTAAAGAGCTTTTGAAGAAAGTGTCTTTGATGGT
GATCAGCGGTTACTTGCCAGAACCGGATACCAAAGACTTTTGGTACGAAG
ATTACGGCAAAATGAAAAAGTGGGCAATACATGTATCCTGCAGGTCAGAT
AGATTCGAACATGCTGCTTTCTTTGACAAAGTCACTTCCGTTGACTTCAC
GGAGGTTCTGTGGAATATGTACAAGTTTTCCCGTGTTCCAGAGGGCTCCG
GACTTGCGGAAAGAGAGTATTTTGTACGTGACAAATACTTCTACCTAAAA
GTGACTGCATGGAACCCTTGGATCTCCGGTCTTTGGCCAGCGGGTACTAG
GAGCGTTTTTCATTATATGGGCAAGCTAGGCCATGTTGGCCAATTCACTT
GGTGGATCTGTAGACCTTCCGGCAATATCTTTGGTTGCATGGTATCTCAT
ACCAAGCTTGCAGACTTGGAGAAACTAGGCCTTGTGACTCCCGCCGATCA
TCGTCATATAGTTGAAAAGATGTATAAGGAGATGGACCCACCAACAATTG
TAGTAGCCATAAAAAAGAGTCAGGCTATACCCTGTTCCGGAGCAAAGGCA
ACTCTGAGGTTTGTGACATATACGTACATTCGGAAAATAACCTGA

Coding sequence (CDS) from alignment at tig00000027_pilon:587661..589055+

>Ggra1017.t1 ID=Ggra1017.t1|Name=Ggra1017.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00000027_pilon:587661..589055+ (Gracilaria gracilis GNS1m male)
ATGGAAAGGCAACAAGCGTTTCAGATATGGAATAATCAGAAGAGTTTTGC
GGAGAAGAAGAAGTTCAGCATACTGGACTATCCCGGCTCCTCACTACACA
TCCTCCGAATATGTGCTGACTTGGGCAGAAAGGGCATTCTATGCGCCCGT
CAGGGACTTTCGCGTCCAATATCGCCAGATGCAGAGAACGTGCGCCAACT
AATCAGTGACTGGGAGCGTGTTCCAAAAAGTAATAAATGCTGCTTTGAGG
GGACGGTGGACGACTTGTTAAACATGAAGAGAGTGACGGTCATTGCAATT
TCTTATAGGCATGAAGAGAAGACTCGTTGGGGCAAGCATGGGAGAAATAA
GGTTTCTAAGATGTCCGATCGTAATCAAAAGCTTCTAGAGAAAGCTATTG
ACAATCTCAAGCACTATAAGGGGGATCTGGACATGCTCCCGGAACATTCA
CAGATCCTGCTCTGGTGCGATCAGATCCTCTCGGCCCGACTGAAGGGAAA
GGAAAATGAACTCGGATGGTATAACGCAGGCCTCATTCCTTACGCATACT
TTCCAGTATTAGCTCTTTCGACGCACATAAACCAATCCAACAACGAGCTA
GAGAAAAGGGTATGGATCAAGGCTGAGAGATCCTTAGGACGAATGGGCAG
GGGGCTTGTTCGAGCAGACCAGCTCTCTGAGTTATTCGATCCATTGGCAA
GCTTTCCATATTGTGCTGCAAAAGACGACAACGCAGAAAGGAACGAGTTC
GGGGATGGCGCGTCTCCTAAAGAGCTTTTGAAGAAAGTGTCTTTGATGGT
GATCAGCGGTTACTTGCCAGAACCGGATACCAAAGACTTTTGGTACGAAG
ATTACGGCAAAATGAAAAAGTGGGCAATACATGTATCCTGCAGGTCAGAT
AGATTCGAACATGCTGCTTTCTTTGACAAAGTCACTTCCGTTGACTTCAC
GGAGGTTCTGTGGAATATGTACAAGTTTTCCCGTGTTCCAGAGGGCTCCG
GACTTGCGGAAAGAGAGTATTTTGTACGTGACAAATACTTCTACCTAAAA
GTGACTGCATGGAACCCTTGGATCTCCGGTCTTTGGCCAGCGGGTACTAG
GAGCGTTTTTCATTATATGGGCAAGCTAGGCCATGTTGGCCAATTCACTT
GGTGGATCTGTAGACCTTCCGGCAATATCTTTGGTTGCATGGTATCTCAT
ACCAAGCTTGCAGACTTGGAGAAACTAGGCCTTGTGACTCCCGCCGATCA
TCGTCATATAGTTGAAAAGATGTATAAGGAGATGGACCCACCAACAATTG
TAGTAGCCATAAAAAAGAGTCAGGCTATACCCTGTTCCGGAGCAAAGGCA
ACTCTGAGGTTTGTGACATATACGTACATTCGGAAAATAACCTGA