Ggra10131.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10131.t1
Unique NameGgra10131.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:353066..353854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10131Ggra10131Gracilaria gracilis GNS1m malegenetig00000113_pilon 353066..353854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10131.t1Ggra10131.t1Gracilaria gracilis GNS1m malepolypeptidetig00000113_pilon 353066..353854 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10131.t1.stop1Ggra10131.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000113_pilon 353066..353068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10131.t1.CDS1Ggra10131.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000113_pilon 353066..353512 -
Ggra10131.t1.CDS2Ggra10131.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000113_pilon 353600..353854 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10131.t1.exon1Ggra10131.t1.exon1Gracilaria gracilis GNS1m maleexontig00000113_pilon 353066..353512 -
Ggra10131.t1.exon2Ggra10131.t1.exon2Gracilaria gracilis GNS1m maleexontig00000113_pilon 353600..353854 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10131.t1.intron1Ggra10131.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000113_pilon 353513..353599 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10131.t1.start1Ggra10131.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000113_pilon 353852..353854 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10131.t1 ID=Ggra10131.t1|Name=Ggra10131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MQFDGDSTVLQLDYHRPDAEFIDEIGHTDSEEFTSASEPFSSGSEDEEDE
EVFFPFSRDKPNTSAYALSTINHEQGQASGQVVPVVLEEERQRFEDADEN
EDSSSEDDAENSPPPEEGLFLPIRIEVVLLRPKEPNGRPDYLICRVYRRY
PLLASGDSIHPHVSDLPYGEMGVLELDSLAAHVVRFGEGWPIPDPAGDDH
PHDAPQGEEPQDHVTYVELEGSIDENHPNPSSF*
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spliced messenger RNA

>Ggra10131.t1 ID=Ggra10131.t1|Name=Ggra10131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000113_pilon:353066..353854- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTCGATGGTGACTCCACCGTCTTACAGTTGGATTATCATCGTCC
TGACGCAGAGTTCATTGATGAAATAGGGCATACGGACAGCGAGGAATTTA
CGTCAGCCTCCGAACCATTCTCCTCTGGAAGTGAGGACGAAGAAGACGAA
GAAGTTTTCTTCCCTTTCTCAAGAGACAAACCGAACACTTCGGCATACGC
TCTGTCTACAATTAATCATGAGCAAGGTCAAGCATCTGGGCAAGTTGTGC
CGGTTGTGTTGGAAGAAGAACGCCAACGATTCGAAGATGCAGACGAAAAT
GAAGACAGTTCAAGCGAGGACGATGCAGAGAACTCTCCTCCACCCGAGGA
AGGCCTCTTCCTTCCGATAAGAATTGAAGTTGTCTTGCTGAGACCGAAAG
AGCCGAACGGTCGGCCGGATTACCTTATCTGTCGAGTGTATCGTCGTTAC
CCTCTGTTGGCATCTGGTGACTCCATTCATCCTCACGTTTCAGACCTACC
GTATGGTGAGATGGGCGTGCTCGAGTTGGACAGTCTCGCTGCACATGTGG
TTCGCTTCGGAGAAGGATGGCCAATCCCTGACCCTGCCGGTGACGATCAC
CCTCACGACGCGCCGCAAGGAGAGGAACCTCAGGATCATGTCACATATGT
GGAATTAGAGGGTTCAATTGACGAAAATCACCCGAACCCATCGTCGTTCT
AG
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protein sequence of Ggra10131.t1

>Ggra10131.t1 ID=Ggra10131.t1|Name=Ggra10131.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MQFDGDSTVLQLDYHRPDAEFIDEIGHTDSEEFTSASEPFSSGSEDEEDE
EVFFPFSRDKPNTSAYALSTINHEQGQASGQVVPVVLEEERQRFEDADEN
EDSSSEDDAENSPPPEEGLFLPIRIEVVLLRPKEPNGRPDYLICRVYRRY
PLLASGDSIHPHVSDLPYGEMGVLELDSLAAHVVRFGEGWPIPDPAGDDH
PHDAPQGEEPQDHVTYVELEGSIDENHPNPSSF*
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mRNA from alignment at tig00000113_pilon:353066..353854-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10131.t1 ID=Ggra10131.t1|Name=Ggra10131.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00000113_pilon:353066..353854- (Gracilaria gracilis GNS1m male)
ATGCAGTTCGATGGTGACTCCACCGTCTTACAGTTGGATTATCATCGTCC
TGACGCAGAGTTCATTGATGAAATAGGGCATACGGACAGCGAGGAATTTA
CGTCAGCCTCCGAACCATTCTCCTCTGGAAGTGAGGACGAAGAAGACGAA
GAAGTTTTCTTCCCTTTCTCAAGAGACAAACCGAACACTTCGGCATACGC
TCTGTCTACAATTAATCATGAGCAAGGTCAAGCATCTGGGCAAGTTGTGC
CGGTTGTGTCCAATCCTCAGGGCTTAGAACAAGAAATTTAGGAGTTGGAT
ATCACTGAAGAAGAGAATGAACCTGTTGTTCCTTTGTCGCAGGTGTTGGA
AGAAGAACGCCAACGATTCGAAGATGCAGACGAAAATGAAGACAGTTCAA
GCGAGGACGATGCAGAGAACTCTCCTCCACCCGAGGAAGGCCTCTTCCTT
CCGATAAGAATTGAAGTTGTCTTGCTGAGACCGAAAGAGCCGAACGGTCG
GCCGGATTACCTTATCTGTCGAGTGTATCGTCGTTACCCTCTGTTGGCAT
CTGGTGACTCCATTCATCCTCACGTTTCAGACCTACCGTATGGTGAGATG
GGCGTGCTCGAGTTGGACAGTCTCGCTGCACATGTGGTTCGCTTCGGAGA
AGGATGGCCAATCCCTGACCCTGCCGGTGACGATCACCCTCACGACGCGC
CGCAAGGAGAGGAACCTCAGGATCATGTCACATATGTGGAATTAGAGGGT
TCAATTGACGAAAATCACCCGAACCCATCGTCGTTCTAG
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Coding sequence (CDS) from alignment at tig00000113_pilon:353066..353854-

>Ggra10131.t1 ID=Ggra10131.t1|Name=Ggra10131.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000113_pilon:353066..353854- (Gracilaria gracilis GNS1m male)
ATGCAGTTCGATGGTGACTCCACCGTCTTACAGTTGGATTATCATCGTCC
TGACGCAGAGTTCATTGATGAAATAGGGCATACGGACAGCGAGGAATTTA
CGTCAGCCTCCGAACCATTCTCCTCTGGAAGTGAGGACGAAGAAGACGAA
GAAGTTTTCTTCCCTTTCTCAAGAGACAAACCGAACACTTCGGCATACGC
TCTGTCTACAATTAATCATGAGCAAGGTCAAGCATCTGGGCAAGTTGTGC
CGGTTGTGTTGGAAGAAGAACGCCAACGATTCGAAGATGCAGACGAAAAT
GAAGACAGTTCAAGCGAGGACGATGCAGAGAACTCTCCTCCACCCGAGGA
AGGCCTCTTCCTTCCGATAAGAATTGAAGTTGTCTTGCTGAGACCGAAAG
AGCCGAACGGTCGGCCGGATTACCTTATCTGTCGAGTGTATCGTCGTTAC
CCTCTGTTGGCATCTGGTGACTCCATTCATCCTCACGTTTCAGACCTACC
GTATGGTGAGATGGGCGTGCTCGAGTTGGACAGTCTCGCTGCACATGTGG
TTCGCTTCGGAGAAGGATGGCCAATCCCTGACCCTGCCGGTGACGATCAC
CCTCACGACGCGCCGCAAGGAGAGGAACCTCAGGATCATGTCACATATGT
GGAATTAGAGGGTTCAATTGACGAAAATCACCCGAACCCATCGTCGTTCT
AG
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