Ggra10130.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10130.t1
Unique NameGgra10130.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:333872..334948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10130Ggra10130Gracilaria gracilis GNS1m malegenetig00000113_pilon 333872..334948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10130.t1Ggra10130.t1Gracilaria gracilis GNS1m malepolypeptidetig00000113_pilon 333872..334948 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10130.t1.stop1Ggra10130.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000113_pilon 333872..333874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10130.t1.CDS1Ggra10130.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000113_pilon 333872..334186 -
Ggra10130.t1.CDS2Ggra10130.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000113_pilon 334244..334482 -
Ggra10130.t1.CDS3Ggra10130.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000113_pilon 334684..334948 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10130.t1.exon1Ggra10130.t1.exon1Gracilaria gracilis GNS1m maleexontig00000113_pilon 333872..334186 -
Ggra10130.t1.exon2Ggra10130.t1.exon2Gracilaria gracilis GNS1m maleexontig00000113_pilon 334244..334482 -
Ggra10130.t1.exon3Ggra10130.t1.exon3Gracilaria gracilis GNS1m maleexontig00000113_pilon 334684..334948 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10130.t1.intron1Ggra10130.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000113_pilon 334187..334243 -
Ggra10130.t1.intron2Ggra10130.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000113_pilon 334483..334683 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10130.t1.start1Ggra10130.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000113_pilon 334946..334948 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10130.t1 ID=Ggra10130.t1|Name=Ggra10130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp
MRPTGENSKNAVSFLNSKISDKSRNQYMSGADRLLKAEVVDKLCFLETNK
TVLLRIRSLSGVRLWSVQKIQETVQTWILDTNIGTQPRCNTSYVVEDNHD
MIRIVDLVKSKVEKEYRNDAPFDLTQLIQEQCVQIKEANRRKEGLVVEAG
LLDKSMPLLPSQILCMQRGETAVNNVVVFDPILTRGWWDKPWRSNDTGLK
TNQSDVSAYKLNITNDHDLVWRKLISLFILVRFGSLVTGSCGELAESFGY
LRGKETAEHQTAFDSRARGLIE*
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spliced messenger RNA

>Ggra10130.t1 ID=Ggra10130.t1|Name=Ggra10130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000113_pilon:333872..334948- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACCTACAGGGGAGAACAGTAAGAACGCAGTAAGCTTTCTGAACTC
TAAGATCTCTGATAAATCGAGAAACCAGTACATGTCTGGAGCCGACCGTC
TTCTTAAAGCCGAGGTTGTGGACAAGCTGTGCTTCTTGGAGACAAATAAA
ACGGTTTTGTTGCGCATCAGATCTCTCAGTGGAGTTCGACTGTGGTCTGT
TCAGAAAATACAGGAGACAGTACAAACCTGGATTTTAGATACGAATATTG
GAACGCAGCCAAGGTGCAACACGTCTTACGTCGTAGAAGACAATCACGAC
ATGATTCGTATTGTAGATCTCGTCAAATCAAAGGTGGAGAAGGAGTACAG
AAACGACGCCCCTTTCGATCTTACACAACTGATTCAAGAGCAATGCGTTC
AAATTAAGGAAGCGAACCGTAGGAAAGAAGGCTTGGTCGTGGAGGCCGGC
TTGTTGGACAAGTCAATGCCTTTGCTTCCATCGCAGATTTTGTGCATGCA
GAGGGGAGAAACTGCTGTGAACAACGTGGTCGTGTTTGACCCAATACTGA
CCAGGGGTTGGTGGGATAAACCGTGGCGATCCAATGATACAGGACTGAAA
ACCAATCAATCTGATGTATCAGCTTACAAGCTAAATATCACCAACGACCA
CGACCTTGTTTGGCGAAAGCTTATATCCCTGTTTATTCTTGTGCGGTTTG
GATCACTGGTCACTGGGAGTTGTGGTGAACTTGCCGAATCTTTTGGGTAT
CTTCGAGGAAAAGAAACAGCCGAGCACCAAACTGCCTTTGACAGTAGAGC
ACGGGGCCTAATTGAATAA
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protein sequence of Ggra10130.t1

>Ggra10130.t1 ID=Ggra10130.t1|Name=Ggra10130.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=273bp
MRPTGENSKNAVSFLNSKISDKSRNQYMSGADRLLKAEVVDKLCFLETNK
TVLLRIRSLSGVRLWSVQKIQETVQTWILDTNIGTQPRCNTSYVVEDNHD
MIRIVDLVKSKVEKEYRNDAPFDLTQLIQEQCVQIKEANRRKEGLVVEAG
LLDKSMPLLPSQILCMQRGETAVNNVVVFDPILTRGWWDKPWRSNDTGLK
TNQSDVSAYKLNITNDHDLVWRKLISLFILVRFGSLVTGSCGELAESFGY
LRGKETAEHQTAFDSRARGLIE*
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mRNA from alignment at tig00000113_pilon:333872..334948-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10130.t1 ID=Ggra10130.t1|Name=Ggra10130.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000113_pilon:333872..334948- (Gracilaria gracilis GNS1m male)
ATGAGACCTACAGGGGAGAACAGTAAGAACGCAGTAAGCTTTCTGAACTC
TAAGATCTCTGATAAATCGAGAAACCAGTACATGTCTGGAGCCGACCGTC
TTCTTAAAGCCGAGGTTGTGGACAAGCTGTGCTTCTTGGAGACAAATAAA
ACGGTTTTGTTGCGCATCAGATCTCTCAGTGGAGTTCGACTGTGGTCTGT
TCAGAAAATACAGGAGACAGTACAAACCTGGATTTTAGATACGAATATTG
GAACGCAGCCAAGGTGTAAGTTTTCGAACATTTCAAAGAAGAAGGAGGTT
GTCTACAAATCGCGAGTTCATAAGCAAACAGAGAAGAAAAATCCAGTCCC
TCCTTCATCGGGCTGGGAGGACTACATTGATTGGAGCCGCCAAGGTTCGA
TCGGGCCCATTGAAGAACTGCGAAAGAAGTTATCAGACTAGAATTTAATC
GGTGTTACTGCGACAGGCAACACGTCTTACGTCGTAGAAGACAATCACGA
CATGATTCGTATTGTAGATCTCGTCAAATCAAAGGTGGAGAAGGAGTACA
GAAACGACGCCCCTTTCGATCTTACACAACTGATTCAAGAGCAATGCGTT
CAAATTAAGGAAGCGAACCGTAGGAAAGAAGGCTTGGTCGTGGAGGCCGG
CTTGTTGGACAAGTCAATGCCTTTGCTTCCATCGCAGATTTTGTGCATGC
AGAGGGTGAGAAACGCCAACGATCACTCATTACTCTTCACCTTGAACTAC
TTAAACAACTAGGGAGAAACTGCTGTGAACAACGTGGTCGTGTTTGACCC
AATACTGACCAGGGGTTGGTGGGATAAACCGTGGCGATCCAATGATACAG
GACTGAAAACCAATCAATCTGATGTATCAGCTTACAAGCTAAATATCACC
AACGACCACGACCTTGTTTGGCGAAAGCTTATATCCCTGTTTATTCTTGT
GCGGTTTGGATCACTGGTCACTGGGAGTTGTGGTGAACTTGCCGAATCTT
TTGGGTATCTTCGAGGAAAAGAAACAGCCGAGCACCAAACTGCCTTTGAC
AGTAGAGCACGGGGCCTAATTGAATAA
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Coding sequence (CDS) from alignment at tig00000113_pilon:333872..334948-

>Ggra10130.t1 ID=Ggra10130.t1|Name=Ggra10130.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00000113_pilon:333872..334948- (Gracilaria gracilis GNS1m male)
ATGAGACCTACAGGGGAGAACAGTAAGAACGCAGTAAGCTTTCTGAACTC
TAAGATCTCTGATAAATCGAGAAACCAGTACATGTCTGGAGCCGACCGTC
TTCTTAAAGCCGAGGTTGTGGACAAGCTGTGCTTCTTGGAGACAAATAAA
ACGGTTTTGTTGCGCATCAGATCTCTCAGTGGAGTTCGACTGTGGTCTGT
TCAGAAAATACAGGAGACAGTACAAACCTGGATTTTAGATACGAATATTG
GAACGCAGCCAAGGTGCAACACGTCTTACGTCGTAGAAGACAATCACGAC
ATGATTCGTATTGTAGATCTCGTCAAATCAAAGGTGGAGAAGGAGTACAG
AAACGACGCCCCTTTCGATCTTACACAACTGATTCAAGAGCAATGCGTTC
AAATTAAGGAAGCGAACCGTAGGAAAGAAGGCTTGGTCGTGGAGGCCGGC
TTGTTGGACAAGTCAATGCCTTTGCTTCCATCGCAGATTTTGTGCATGCA
GAGGGGAGAAACTGCTGTGAACAACGTGGTCGTGTTTGACCCAATACTGA
CCAGGGGTTGGTGGGATAAACCGTGGCGATCCAATGATACAGGACTGAAA
ACCAATCAATCTGATGTATCAGCTTACAAGCTAAATATCACCAACGACCA
CGACCTTGTTTGGCGAAAGCTTATATCCCTGTTTATTCTTGTGCGGTTTG
GATCACTGGTCACTGGGAGTTGTGGTGAACTTGCCGAATCTTTTGGGTAT
CTTCGAGGAAAAGAAACAGCCGAGCACCAAACTGCCTTTGACAGTAGAGC
ACGGGGCCTAATTGAATAA
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