Ggra10127.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10127.t1
Unique NameGgra10127.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:271033..272330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3712.Bo5g120010.1
Max annot lvl3712.Bo5g120010.1|-
Evalue1.66e-26
EggNOG OGs2E6EH@1|root,2SD4H@2759|Eukaryota
DescriptionPlant transposon protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10127Ggra10127Gracilaria gracilis GNS1m malegenetig00000113_pilon 271033..272330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10127.t1Ggra10127.t1Gracilaria gracilis GNS1m malepolypeptidetig00000113_pilon 271033..272330 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10127.t1.stop1Ggra10127.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000113_pilon 271033..271035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10127.t1.CDS1Ggra10127.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000113_pilon 271033..271468 -
Ggra10127.t1.CDS2Ggra10127.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000113_pilon 271837..272330 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10127.t1.exon1Ggra10127.t1.exon1Gracilaria gracilis GNS1m maleexontig00000113_pilon 271033..271468 -
Ggra10127.t1.exon2Ggra10127.t1.exon2Gracilaria gracilis GNS1m maleexontig00000113_pilon 271837..272330 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10127.t1.intron1Ggra10127.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000113_pilon 271469..271836 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10127.t1.start1Ggra10127.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000113_pilon 272328..272330 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10127.t1 ID=Ggra10127.t1|Name=Ggra10127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=310bp
MFARTLLLLNNFQKIGKTRKRRGRLRGSRNIDKGRSTWIKDYLGSESVYS
LKDFRRRFGVPRVLFWKLHNDLVENYPEIWTQRRNCYDKLGHPSQVKVLT
FLRFLTTNRSYDDLDDGSRMSAQSIRFYVYKFWYYILQLYGSHYLNRRPS
TDELQHMSELYDEVGEEENRYTARQKGRRKDVERLFGVLQARFGVLRDDV
RLWYEDEIIRVSQTCVVLHNLIVEMQRQRHFQEDADEEEGEIDFLTELYD
MQVTENGEPQQQTTAQGHSSEYLMNDGQSENFLVRYGFLTSGLGHEALKK
DFIIRLGSE*
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spliced messenger RNA

>Ggra10127.t1 ID=Ggra10127.t1|Name=Ggra10127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000113_pilon:271033..272330- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCCCGGACACTTCTACTTCTCAACAACTTTCAGAAAATTGGAAA
GACTCGAAAGCGCAGAGGAAGACTGAGAGGCTCCCGAAACATTGATAAAG
GACGATCCACATGGATAAAAGACTACCTGGGTTCTGAGAGTGTCTACAGC
CTAAAAGATTTCAGAAGGCGATTTGGTGTCCCTCGTGTTCTGTTTTGGAA
GCTTCATAATGACCTTGTCGAAAACTATCCTGAAATATGGACACAAAGAC
GAAACTGTTACGATAAGCTGGGACATCCCTCACAAGTGAAAGTATTGACT
TTTTTACGTTTTTTGACTACAAATCGAAGCTATGACGATCTAGATGACGG
TTCCAGAATGAGTGCACAGTCGATTCGGTTCTATGTGTATAAGTTTTGGT
ACTACATTCTACAGTTATATGGTTCACATTATCTGAACAGAAGACCTAGT
ACGGATGAATTGCAGCACATGTCGGAACTATACGATGAAGTAGGTGAGGA
GGAAAATAGGTACACAGCACGACAGAAAGGAAGAAGGAAAGACGTTGAAA
GGCTTTTCGGGGTTCTACAGGCGCGCTTTGGGGTACTGCGTGATGATGTG
CGACTTTGGTATGAAGATGAGATAATCAGGGTCTCGCAGACTTGTGTTGT
GCTTCACAATTTAATCGTAGAAATGCAGCGGCAGAGACATTTTCAGGAAG
ACGCGGATGAAGAGGAAGGCGAGATTGATTTCTTAACAGAGCTATACGAT
ATGCAGGTAACCGAAAATGGTGAACCTCAACAGCAAACGACTGCACAGGG
ACATAGCAGTGAGTATCTCATGAACGACGGCCAGTCCGAGAACTTTCTGG
TACGATATGGTTTTCTGACCTCAGGACTTGGGCACGAAGCGTTGAAGAAG
GATTTCATAATCAGACTTGGAAGCGAGTAA
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protein sequence of Ggra10127.t1

>Ggra10127.t1 ID=Ggra10127.t1|Name=Ggra10127.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MFARTLLLLNNFQKIGKTRKRRGRLRGSRNIDKGRSTWIKDYLGSESVYS
LKDFRRRFGVPRVLFWKLHNDLVENYPEIWTQRRNCYDKLGHPSQVKVLT
FLRFLTTNRSYDDLDDGSRMSAQSIRFYVYKFWYYILQLYGSHYLNRRPS
TDELQHMSELYDEVGEEENRYTARQKGRRKDVERLFGVLQARFGVLRDDV
RLWYEDEIIRVSQTCVVLHNLIVEMQRQRHFQEDADEEEGEIDFLTELYD
MQVTENGEPQQQTTAQGHSSEYLMNDGQSENFLVRYGFLTSGLGHEALKK
DFIIRLGSE*
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mRNA from alignment at tig00000113_pilon:271033..272330-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10127.t1 ID=Ggra10127.t1|Name=Ggra10127.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1298bp|location=Sequence derived from alignment at tig00000113_pilon:271033..272330- (Gracilaria gracilis GNS1m male)
ATGTTTGCCCGGACACTTCTACTTCTCAACAACTTTCAGAAAATTGGAAA
GACTCGAAAGCGCAGAGGAAGACTGAGAGGCTCCCGAAACATTGATAAAG
GACGATCCACATGGATAAAAGACTACCTGGGTTCTGAGAGTGTCTACAGC
CTAAAAGATTTCAGAAGGCGATTTGGTGTCCCTCGTGTTCTGTTTTGGAA
GCTTCATAATGACCTTGTCGAAAACTATCCTGAAATATGGACACAAAGAC
GAAACTGTTACGATAAGCTGGGACATCCCTCACAAGTGAAAGTATTGACT
TTTTTACGTTTTTTGACTACAAATCGAAGCTATGACGATCTAGATGACGG
TTCCAGAATGAGTGCACAGTCGATTCGGTTCTATGTGTATAAGTTTTGGT
ACTACATTCTACAGTTATATGGTTCACATTATCTGAACAGAAGACCTAGT
ACGGATGAATTGCAGCACATGTCGGAACTATACGATGAAGTAGGGTTCAA
GGGCTGTGCGGAGGCTGTCGATTGCTGCCGCATTTCATGGAAGAACTGCC
CCATTGCGTGGAAAGGTCAATACAAAAACGCCAAAGATGGAAAGATGGCC
AACGTATCCGTGGAGGCATGGTGCGCTCGTGATCTTTATGTTTGGCATTG
GTTTGTGGGGAGACCAGGAACAAACAACGACAAAACAATGGAGCAAACCT
CTCCTTTATTTAACGACATTCTGTTCAACAAGTTTGACTTCAAGTTACTG
GTGCAGTATAAACTTCACGCCGAAGCTGCACTCAGGATTTACCATATTTT
TTAGTGGACGGTATCTACACCAAATGGCCCATCTTTGCTTCTCCTATACA
CATTCCAGGCAGTGAGGAGGAAAATAGGTACACAGCACGACAGAAAGGAA
GAAGGAAAGACGTTGAAAGGCTTTTCGGGGTTCTACAGGCGCGCTTTGGG
GTACTGCGTGATGATGTGCGACTTTGGTATGAAGATGAGATAATCAGGGT
CTCGCAGACTTGTGTTGTGCTTCACAATTTAATCGTAGAAATGCAGCGGC
AGAGACATTTTCAGGAAGACGCGGATGAAGAGGAAGGCGAGATTGATTTC
TTAACAGAGCTATACGATATGCAGGTAACCGAAAATGGTGAACCTCAACA
GCAAACGACTGCACAGGGACATAGCAGTGAGTATCTCATGAACGACGGCC
AGTCCGAGAACTTTCTGGTACGATATGGTTTTCTGACCTCAGGACTTGGG
CACGAAGCGTTGAAGAAGGATTTCATAATCAGACTTGGAAGCGAGTAA
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Coding sequence (CDS) from alignment at tig00000113_pilon:271033..272330-

>Ggra10127.t1 ID=Ggra10127.t1|Name=Ggra10127.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00000113_pilon:271033..272330- (Gracilaria gracilis GNS1m male)
ATGTTTGCCCGGACACTTCTACTTCTCAACAACTTTCAGAAAATTGGAAA
GACTCGAAAGCGCAGAGGAAGACTGAGAGGCTCCCGAAACATTGATAAAG
GACGATCCACATGGATAAAAGACTACCTGGGTTCTGAGAGTGTCTACAGC
CTAAAAGATTTCAGAAGGCGATTTGGTGTCCCTCGTGTTCTGTTTTGGAA
GCTTCATAATGACCTTGTCGAAAACTATCCTGAAATATGGACACAAAGAC
GAAACTGTTACGATAAGCTGGGACATCCCTCACAAGTGAAAGTATTGACT
TTTTTACGTTTTTTGACTACAAATCGAAGCTATGACGATCTAGATGACGG
TTCCAGAATGAGTGCACAGTCGATTCGGTTCTATGTGTATAAGTTTTGGT
ACTACATTCTACAGTTATATGGTTCACATTATCTGAACAGAAGACCTAGT
ACGGATGAATTGCAGCACATGTCGGAACTATACGATGAAGTAGGTGAGGA
GGAAAATAGGTACACAGCACGACAGAAAGGAAGAAGGAAAGACGTTGAAA
GGCTTTTCGGGGTTCTACAGGCGCGCTTTGGGGTACTGCGTGATGATGTG
CGACTTTGGTATGAAGATGAGATAATCAGGGTCTCGCAGACTTGTGTTGT
GCTTCACAATTTAATCGTAGAAATGCAGCGGCAGAGACATTTTCAGGAAG
ACGCGGATGAAGAGGAAGGCGAGATTGATTTCTTAACAGAGCTATACGAT
ATGCAGGTAACCGAAAATGGTGAACCTCAACAGCAAACGACTGCACAGGG
ACATAGCAGTGAGTATCTCATGAACGACGGCCAGTCCGAGAACTTTCTGG
TACGATATGGTTTTCTGACCTCAGGACTTGGGCACGAAGCGTTGAAGAAG
GATTTCATAATCAGACTTGGAAGCGAGTAA
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