Ggra10120.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10120.t1
Unique NameGgra10120.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:232347..234580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog148304.MAPG_09881T0
PFAMsRPE65
Max annot lvl4751|Fungi
KEGG rclassRC00912,RC01690
KEGG koko:K17842
KEGG ReactionR09782
KEGG Pathwayko00906,ko01100,map00906,map01100
Evalue1.63e-14
EggNOG OGsCOG3670@1|root,KOG1285@2759|Eukaryota,38DX7@33154|Opisthokonta,3NYJJ@4751|Fungi,3QNFB@4890|Ascomycota,21780@147550|Sordariomycetes,41PWH@639021|Magnaporthales
EC1.13.11.59
DescriptionRetinal pigment epithelial membrane protein
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10120Ggra10120Gracilaria gracilis GNS1m malegenetig00000113_pilon 232347..234580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10120.t1Ggra10120.t1Gracilaria gracilis GNS1m malepolypeptidetig00000113_pilon 232347..234580 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10120.t1.start1Ggra10120.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000113_pilon 232347..232349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10120.t1.CDS1Ggra10120.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000113_pilon 232347..232706 +
Ggra10120.t1.CDS2Ggra10120.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000113_pilon 233049..233649 +
Ggra10120.t1.CDS3Ggra10120.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000113_pilon 234459..234580 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10120.t1.exon1Ggra10120.t1.exon1Gracilaria gracilis GNS1m maleexontig00000113_pilon 232347..232706 +
Ggra10120.t1.exon2Ggra10120.t1.exon2Gracilaria gracilis GNS1m maleexontig00000113_pilon 233049..233649 +
Ggra10120.t1.exon3Ggra10120.t1.exon3Gracilaria gracilis GNS1m maleexontig00000113_pilon 234459..234580 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10120.t1.intron1Ggra10120.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000113_pilon 232707..233048 +
Ggra10120.t1.intron2Ggra10120.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000113_pilon 233650..234458 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10120.t1.stop1Ggra10120.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000113_pilon 234578..234580 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10120.t1 ID=Ggra10120.t1|Name=Ggra10120.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=361bp
MCEPAPFCAWTTPHLPLTRPWRTLPPRDSRVRPSRRVCRQPATLVANAQR
PSSAPPRPQQPQAPARVHDNTDPTVAFENFEHLPHPQTVPISGHIPEYLH
GHVYYRVGPARFEERHKDGVPIRQFRFKELHPKLSGFGSLAHGMSDKSSG
DYFNVVWDYFPGKVKYHVFRTNRHGHTDILASFRENAYYAHEACLTENYI
VSVLVPTGINFFHLVLFMCLGNAIEIADDKDVKFVVVSRKHGGVVKTFAH
KFFSFTHCVNAFERDDDIVLDLCCVPKMEDIISNDLDDVKSNGTVPDLPL
VRYTLPDVTADSGGGSSSSSKRAFVVTRVCVSKYGVLIASLMQYGQVGPD
LVRQLVDSSE*
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spliced messenger RNA

>Ggra10120.t1 ID=Ggra10120.t1|Name=Ggra10120.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000113_pilon:232347..234580+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGAGCCCGCTCCGTTCTGCGCGTGGACAACGCCGCACCTGCCGCT
CACGCGTCCGTGGCGCACGCTGCCGCCGCGCGATTCGCGCGTCCGTCCGT
CGCGCCGCGTGTGCCGCCAGCCCGCCACGTTGGTCGCCAACGCGCAGCGC
CCTTCGTCAGCGCCGCCGCGTCCACAGCAGCCGCAGGCGCCGGCGCGCGT
GCACGACAACACCGACCCCACGGTCGCCTTTGAGAACTTTGAGCACCTGC
CGCACCCACAGACCGTGCCCATCAGCGGTCACATCCCCGAGTATCTGCAC
GGGCACGTGTACTACCGCGTGGGGCCCGCGCGCTTTGAGGAGCGCCACAA
ggacggggtgccgattcGACAGTTTCGCTTCAAGGAGCTGCATCCCAAGC
TCAGCGGCTTTGGAAGCCTGGCGCACGGAATGTCAGACAAGAGCAGCGGC
GATTACTTCAACGTTGTGTGGGACTATTTTCCGGGCAAGGTCAAGTACCA
CGTGTTCCGCACCAACCGGCATGGCCACACTGACATTTTGGCGTCGTTTC
GTGAGAATGCTTACTACGCACATGAGGCGTGTCTCACCGAGAACTACATC
GTGTCGGTGCTTGTTCCCACCGGCATCAACTTTTTCCACCTGGTGCTGTT
CATGTGCTTGGGCAACGCCATCGAGATTGCGGACGACAAGGACGTGAAAT
TCGTGGTGGTGTCGCGCAAACACGGCGGCGTTGTCAAGACGTTTGCACAC
AAGTTCTTCTCGTTCACGCATTGCGTGAACGCGTTCGAGCGCGACGACGA
CATCGTGCTCGACCTGTGCTGCGTGCCAAAAATGGAGGACATCATCTCAA
ACGATCTGGATGACGTAAAGTCGAACGGAACCGTTCCCGACCTGCCTCTT
GTGCGCTATACGTTGCCCGACGTCACGGCGGAcagcggcggcggcagcag
cagcagcagcaAACGAGCGTTTGTGGTTACAAGGGTATGTGTATCCAAGT
ACGGCGTTCTCATTGCATCGCTCATGCAATACGGCCAAGTCGGCCCCGAC
CTGGTGCGCCAGCTCGTTGACAGCAGCGAGTAG
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protein sequence of Ggra10120.t1

>Ggra10120.t1 ID=Ggra10120.t1|Name=Ggra10120.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=361bp
MCEPAPFCAWTTPHLPLTRPWRTLPPRDSRVRPSRRVCRQPATLVANAQR
PSSAPPRPQQPQAPARVHDNTDPTVAFENFEHLPHPQTVPISGHIPEYLH
GHVYYRVGPARFEERHKDGVPIRQFRFKELHPKLSGFGSLAHGMSDKSSG
DYFNVVWDYFPGKVKYHVFRTNRHGHTDILASFRENAYYAHEACLTENYI
VSVLVPTGINFFHLVLFMCLGNAIEIADDKDVKFVVVSRKHGGVVKTFAH
KFFSFTHCVNAFERDDDIVLDLCCVPKMEDIISNDLDDVKSNGTVPDLPL
VRYTLPDVTADSGGGSSSSSKRAFVVTRVCVSKYGVLIASLMQYGQVGPD
LVRQLVDSSE*
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mRNA from alignment at tig00000113_pilon:232347..234580+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10120.t1 ID=Ggra10120.t1|Name=Ggra10120.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2234bp|location=Sequence derived from alignment at tig00000113_pilon:232347..234580+ (Gracilaria gracilis GNS1m male)
ATGTGCGAGCCCGCTCCGTTCTGCGCGTGGACAACGCCGCACCTGCCGCT
CACGCGTCCGTGGCGCACGCTGCCGCCGCGCGATTCGCGCGTCCGTCCGT
CGCGCCGCGTGTGCCGCCAGCCCGCCACGTTGGTCGCCAACGCGCAGCGC
CCTTCGTCAGCGCCGCCGCGTCCACAGCAGCCGCAGGCGCCGGCGCGCGT
GCACGACAACACCGACCCCACGGTCGCCTTTGAGAACTTTGAGCACCTGC
CGCACCCACAGACCGTGCCCATCAGCGGTCACATCCCCGAGTATCTGCAC
GGGCACGTGTACTACCGCGTGGGGCCCGCGCGCTTTGAGGAGCGCCACAA
ggacggggtggtgtggaaggcgcagcagttgttcgatggcattagcaagg
tggcgtcgttccagttcgatgcgcacaaccgaaccgtcacctttcgctcg
cgcttcaacagcacgcgcctgatggagagtattcagaacacgccgtccac
cacgtacaagacgttgtccatttccaagtcgcccaacaccgtgtggcagc
agttgaaggagtggcgcatcccgacgctggaccccgagatcaaccttccg
tacgccaactacgtggcgtcggtggaagatatcccgggcatgggcttgtg
cgcgcgcactgataacgccattgcgcagatcattgatccgaccacgttgc
agccgattcGACAGTTTCGCTTCAAGGAGCTGCATCCCAAGCTCAGCGGC
TTTGGAAGCCTGGCGCACGGAATGTCAGACAAGAGCAGCGGCGATTACTT
CAACGTTGTGTGGGACTATTTTCCGGGCAAGGTCAAGTACCACGTGTTCC
GCACCAACCGGCATGGCCACACTGACATTTTGGCGTCGTTTCGTGAGAAT
GCTTACTACGCACATGAGGCGTGTCTCACCGAGAACTACATCGTGTCGGT
GCTTGTTCCCACCGGCATCAACTTTTTCCACCTGGTGCTGTTCATGTGCT
TGGGCAACGCCATCGAGATTGCGGACGACAAGGACGTGAAATTCGTGGTG
GTGTCGCGCAAACACGGCGGCGTTGTCAAGACGTTTGCACACAAGTTCTT
CTCGTTCACGCATTGCGTGAACGCGTTCGAGCGCGACGACGACATCGTGC
TCGACCTGTGCTGCGTGCCAAAAATGGAGGACATCATCTCAAACGATCTG
GATGACGTAAAGTCGAACGGAACCGTTCCCGACCTGCCTCTTGTGCGCTA
TACGTTGCCCGACGTCACGGCGGAcagcggcggcggcagcagcagcagca
gcagTGAGCCATGGCGCGCGATGAGCGATACCATTGTCGACGTGCTCGGC
GAGTTTCCTTCCATCTCGCCCAGATACGCGCGCAAGCCGtaccgatacac
gtacacggtgggggtgaaggaggaggtgatggccgggtgcatccgcaaat
tcgacctgcacacgggcgagatgagaagctttgcagtgcgcagctgcgtg
ttgggcgagccgtttttcgtggccaacccgcagggggagagcgaggacga
cggctgcgtggtggtggtggcgctggacacggcggagagaaagtccatct
tgctggtgctggacgcgaaacagtttgtgcaggtggcgcgcgccgatctg
ggggcggccatctcgagcggctttcacggCTACATgcggcaggcggcggc
ggcggcggcggcggcggcggcggcggcggcgTGAGCTGAGCTGAGCAAAA
GGGGCGCGCCACCCGTTTTTGGACGCGCGCGCGCACAGCGTGCGTGTTGG
CGGTTGCGTACCGTTTTGTATTCTATCTGGCGCCCTTTTTGCGGCCGCCT
TCTGCAGCGGCGTGTGGCTGTGGGCCACAGCGTGTGGCTGCTGATCGCAT
GGCGCCTTTGAAAGGGTTGCCCCGGGGCGATGTGGCTGTTTTGGGTTTTG
CGGTTGACTGCGCAGAGTGCTCACACTTGGCGACGACGGGCCTGGGGCCA
AGTTACAGTTTAGGTACCGTTGGTAACGCTTGTGTTTAGTTTTGTATGTC
CGCACCTGATGAGAGAGGTGCTTGTAACTTTAAACGGGGGCTTGATTGCA
AACCATTTATAGAACGAGCGTTTGTGGTTACAAGGGTATGTGTATCCAAG
TACGGCGTTCTCATTGCATCGCTCATGCAATACGGCCAAGTCGGCCCCGA
CCTGGTGCGCCAGCTCGTTGACAGCAGCGAGTAG
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Coding sequence (CDS) from alignment at tig00000113_pilon:232347..234580+

>Ggra10120.t1 ID=Ggra10120.t1|Name=Ggra10120.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00000113_pilon:232347..234580+ (Gracilaria gracilis GNS1m male)
ATGTGCGAGCCCGCTCCGTTCTGCGCGTGGACAACGCCGCACCTGCCGCT
CACGCGTCCGTGGCGCACGCTGCCGCCGCGCGATTCGCGCGTCCGTCCGT
CGCGCCGCGTGTGCCGCCAGCCCGCCACGTTGGTCGCCAACGCGCAGCGC
CCTTCGTCAGCGCCGCCGCGTCCACAGCAGCCGCAGGCGCCGGCGCGCGT
GCACGACAACACCGACCCCACGGTCGCCTTTGAGAACTTTGAGCACCTGC
CGCACCCACAGACCGTGCCCATCAGCGGTCACATCCCCGAGTATCTGCAC
GGGCACGTGTACTACCGCGTGGGGCCCGCGCGCTTTGAGGAGCGCCACAA
ggacggggtgccgattcGACAGTTTCGCTTCAAGGAGCTGCATCCCAAGC
TCAGCGGCTTTGGAAGCCTGGCGCACGGAATGTCAGACAAGAGCAGCGGC
GATTACTTCAACGTTGTGTGGGACTATTTTCCGGGCAAGGTCAAGTACCA
CGTGTTCCGCACCAACCGGCATGGCCACACTGACATTTTGGCGTCGTTTC
GTGAGAATGCTTACTACGCACATGAGGCGTGTCTCACCGAGAACTACATC
GTGTCGGTGCTTGTTCCCACCGGCATCAACTTTTTCCACCTGGTGCTGTT
CATGTGCTTGGGCAACGCCATCGAGATTGCGGACGACAAGGACGTGAAAT
TCGTGGTGGTGTCGCGCAAACACGGCGGCGTTGTCAAGACGTTTGCACAC
AAGTTCTTCTCGTTCACGCATTGCGTGAACGCGTTCGAGCGCGACGACGA
CATCGTGCTCGACCTGTGCTGCGTGCCAAAAATGGAGGACATCATCTCAA
ACGATCTGGATGACGTAAAGTCGAACGGAACCGTTCCCGACCTGCCTCTT
GTGCGCTATACGTTGCCCGACGTCACGGCGGAcagcggcggcggcagcag
cagcagcagcaAACGAGCGTTTGTGGTTACAAGGGTATGTGTATCCAAGT
ACGGCGTTCTCATTGCATCGCTCATGCAATACGGCCAAGTCGGCCCCGAC
CTGGTGCGCCAGCTCGTTGACAGCAGCGAGTAG
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