Ggra10115.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10115.t1
Unique NameGgra10115.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length558
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000113_piloncontigtig00000113_pilon:162026..163699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709279.1
PFAMsSAICAR_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00162
KEGG koko:K01923
KEGG ReactionR04591
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009733,GO:0009987,GO:0010033,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue4.93e-210
EggNOG OGsCOG0152@1|root,KOG2835@2759|Eukaryota
EC6.3.2.6
Descriptionphosphoribosylaminoimidazole carboxylase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10115Ggra10115Gracilaria gracilis GNS1m malegenetig00000113_pilon 162026..163699 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10115.t1.start1Ggra10115.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000113_pilon 162026..162028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10115.t1.CDS1Ggra10115.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000113_pilon 162026..163699 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10115.t1.exon1Ggra10115.t1.exon1Gracilaria gracilis GNS1m maleexontig00000113_pilon 162026..163699 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10115.t1.stop1Ggra10115.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000113_pilon 163697..163699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10115.t1Ggra10115.t1Gracilaria gracilis GNS1m malepolypeptidetig00000113_pilon 162026..163699 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10115.t1 ID=Ggra10115.t1|Name=Ggra10115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp
MSAFITSLPLTIHNRSTFTCPRSCNAIKPRRPSHVSLPISAVRMSAKSSS
APLVPILMGSASDATFCKKIAAALTSLGIESELRIASAHKVPHRLLDVLE
QYEALPRPKVYIAVAGRSNALSGVLDCAVSSPVVSCPPYSDAFGGADLFS
SIRMPSGVAPMLVLDAGGAALAAAKILALSDEHIRLRVDALQRANRDRLY
VDDAQLVSESYRDAIAEVRLNGQTMIETDAQQLFGAAKKDAVTSSRKGKV
RDQYSFDGVMNGSKEPLLALVTTDRQSAFDRILAAIPFKGAVLNKTAAFW
FENTKHIVPNHVLDVPHPNVTIARRCTPFPIEFVVRGYITGSTSTSLWKN
YSNGVRNYCGIQFPDGMVKNQKLECNVITPTTKEEAGDRPISPTDVIKEQ
FMTQEDWDYCADKALKLFEFGQKVAGENGLILVDTKYEFGKDEDGTIRLI
DEIHTPDSSRFWLATSYGKRFAEGKEPENVDKEFLRLWFTENSDPYDKTK
PLPEAPADLVDELSRRYVMLYELITGGSFEDLTVDGGVTNVTDSLAQFVA
EFSAAAR*
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spliced messenger RNA

>Ggra10115.t1 ID=Ggra10115.t1|Name=Ggra10115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00000113_pilon:162026..163699+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCTTTCATAACTTCGCTACCGCTAACTATCCACAATCGCTCCAC
GTTCACTTGTCCGCGCTCGTGCAATGCCATCAAACCGCGGCGCCCGAGTC
ATGTGTCGCTTCCCATCTCCGCGGTTCGCATGTCTGCAAAATCGTCCTCT
GCCCCACTCGTTCCAATTCTCATGGGTTCTGCTTCAGACGCAACTTTCTG
CAAGAAGATAGCTGCCGCCCTCACCAGCCTGGGTATCGAATCTGAGCTGC
GTATTGCCTCAGCTCACAAGGTTCCGCATCGCCTCCTCGACGTATTGGAA
CAGTATGAGGCCCTACCGCGTCCTAAGGTTTACATCGCCGTCGCTGGGCG
ATCAAATGCGTTATCCGGTGTTTTGGATTGTGCTGTTTCGTCTCCGGTCG
TTTCTTGTCCGCCGTATTCAGATGCATTTGGTGGAGCTGATCTATTTTCG
AGTATTCGCATGCCGTCGGGAGTGGCTCCTATGTTGGTTCTTGATGCTGG
TGGTGCAGCTTTGGCTGCTGCAAAGATTCTGGCCCTCAGTGATGAACATA
TTCGTCTCCGCGTTGATGCGTTGCAACGCGCAAATAGAGATCGTTTGTAC
GTGGATGATGCTCAGCTTGTGTCGGAAAGCTATCGCGATGCCATTGCGGA
AGTTAGATTGAATGGCCAGACGATGATCGAAACTGACGCGCAACAGCTGT
TTGGGGCCGCTAAGAAGGATGCCGTTACGTCTTCAAGAAAAGGGAAGGTT
CGCGATCAATACTCTTTTGACGGTGTAATGAATGGTTCGAAGGAACCACT
TTTGGCTTTGGTTACCACCGATAGACAAAGTGCTTTTGATCGCATTCTCG
CGGCGATTCCATTCAAGGGTGCGGTTCTTAACAAGACCGCTGCTTTTTGG
TTTGAGAACACTAAGCACATCGTTCCGAATCATGTTCTCGACGTCCCTCA
CCCGAATGTAACCATCGCGAGAAGATGCACCCCATTCCCAATTGAATTCG
TCGTCAGGGGATACATCACCGGGAGCACGTCCACGTCGTTATGGAAGAAC
TATTCGAATGGAGTGAGGAACTACTGCGGTATCCAATTCCCGGATGGTAT
GGTAAAGAATCAGAAGTTAGAATGTAACGTCATTACCCCTACCACGAAGG
AAGAAGCTGGTGATCGGCCCATCTCACCCACTGATGTCATTAAAGAACAG
TTCATGACACAAGAAGATTGGGACTACTGTGCCGATAAAGCTCTCAAGCT
GTTTGAATTCGGACAGAAAGTGGCTGGGGAAAATGGCCTGATCCTTGTCG
ACACCAAATATGAGTTTGGTAAGGACGAAGATGGTACTATTCGGCTGATC
GATGAGATTCATACCCCGGATTCATCGAGGTTCTGGCTTGCAACTTCGTA
CGGAAAACGTTTTGCAGAAGGGAAGGAACCGGAGAACGTGGATAAGGAAT
TCTTGAGGCTGTGGTTCACAGAGAATTCCGACCCGTACGACAAGACCAAG
CCGCTGCCCGAGGCCCCGGCCGACTTGGTAGATGAGCTCAGTAGGCGATA
TGTCATGCTTTATGAACTCATCACTGGTGGTTCTTTCGAGGATTTGACGG
TAGATGGAGGCGTGACGAATGTAACTGACTCTCTAGCACAGTTTGTTGCC
GAGTTCTCCGCCGCGGCTCGGTGA
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protein sequence of Ggra10115.t1

>Ggra10115.t1 ID=Ggra10115.t1|Name=Ggra10115.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=558bp
MSAFITSLPLTIHNRSTFTCPRSCNAIKPRRPSHVSLPISAVRMSAKSSS
APLVPILMGSASDATFCKKIAAALTSLGIESELRIASAHKVPHRLLDVLE
QYEALPRPKVYIAVAGRSNALSGVLDCAVSSPVVSCPPYSDAFGGADLFS
SIRMPSGVAPMLVLDAGGAALAAAKILALSDEHIRLRVDALQRANRDRLY
VDDAQLVSESYRDAIAEVRLNGQTMIETDAQQLFGAAKKDAVTSSRKGKV
RDQYSFDGVMNGSKEPLLALVTTDRQSAFDRILAAIPFKGAVLNKTAAFW
FENTKHIVPNHVLDVPHPNVTIARRCTPFPIEFVVRGYITGSTSTSLWKN
YSNGVRNYCGIQFPDGMVKNQKLECNVITPTTKEEAGDRPISPTDVIKEQ
FMTQEDWDYCADKALKLFEFGQKVAGENGLILVDTKYEFGKDEDGTIRLI
DEIHTPDSSRFWLATSYGKRFAEGKEPENVDKEFLRLWFTENSDPYDKTK
PLPEAPADLVDELSRRYVMLYELITGGSFEDLTVDGGVTNVTDSLAQFVA
EFSAAAR*
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mRNA from alignment at tig00000113_pilon:162026..163699+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10115.t1 ID=Ggra10115.t1|Name=Ggra10115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1674bp|location=Sequence derived from alignment at tig00000113_pilon:162026..163699+ (Gracilaria gracilis GNS1m male)
ATGTCGGCTTTCATAACTTCGCTACCGCTAACTATCCACAATCGCTCCAC
GTTCACTTGTCCGCGCTCGTGCAATGCCATCAAACCGCGGCGCCCGAGTC
ATGTGTCGCTTCCCATCTCCGCGGTTCGCATGTCTGCAAAATCGTCCTCT
GCCCCACTCGTTCCAATTCTCATGGGTTCTGCTTCAGACGCAACTTTCTG
CAAGAAGATAGCTGCCGCCCTCACCAGCCTGGGTATCGAATCTGAGCTGC
GTATTGCCTCAGCTCACAAGGTTCCGCATCGCCTCCTCGACGTATTGGAA
CAGTATGAGGCCCTACCGCGTCCTAAGGTTTACATCGCCGTCGCTGGGCG
ATCAAATGCGTTATCCGGTGTTTTGGATTGTGCTGTTTCGTCTCCGGTCG
TTTCTTGTCCGCCGTATTCAGATGCATTTGGTGGAGCTGATCTATTTTCG
AGTATTCGCATGCCGTCGGGAGTGGCTCCTATGTTGGTTCTTGATGCTGG
TGGTGCAGCTTTGGCTGCTGCAAAGATTCTGGCCCTCAGTGATGAACATA
TTCGTCTCCGCGTTGATGCGTTGCAACGCGCAAATAGAGATCGTTTGTAC
GTGGATGATGCTCAGCTTGTGTCGGAAAGCTATCGCGATGCCATTGCGGA
AGTTAGATTGAATGGCCAGACGATGATCGAAACTGACGCGCAACAGCTGT
TTGGGGCCGCTAAGAAGGATGCCGTTACGTCTTCAAGAAAAGGGAAGGTT
CGCGATCAATACTCTTTTGACGGTGTAATGAATGGTTCGAAGGAACCACT
TTTGGCTTTGGTTACCACCGATAGACAAAGTGCTTTTGATCGCATTCTCG
CGGCGATTCCATTCAAGGGTGCGGTTCTTAACAAGACCGCTGCTTTTTGG
TTTGAGAACACTAAGCACATCGTTCCGAATCATGTTCTCGACGTCCCTCA
CCCGAATGTAACCATCGCGAGAAGATGCACCCCATTCCCAATTGAATTCG
TCGTCAGGGGATACATCACCGGGAGCACGTCCACGTCGTTATGGAAGAAC
TATTCGAATGGAGTGAGGAACTACTGCGGTATCCAATTCCCGGATGGTAT
GGTAAAGAATCAGAAGTTAGAATGTAACGTCATTACCCCTACCACGAAGG
AAGAAGCTGGTGATCGGCCCATCTCACCCACTGATGTCATTAAAGAACAG
TTCATGACACAAGAAGATTGGGACTACTGTGCCGATAAAGCTCTCAAGCT
GTTTGAATTCGGACAGAAAGTGGCTGGGGAAAATGGCCTGATCCTTGTCG
ACACCAAATATGAGTTTGGTAAGGACGAAGATGGTACTATTCGGCTGATC
GATGAGATTCATACCCCGGATTCATCGAGGTTCTGGCTTGCAACTTCGTA
CGGAAAACGTTTTGCAGAAGGGAAGGAACCGGAGAACGTGGATAAGGAAT
TCTTGAGGCTGTGGTTCACAGAGAATTCCGACCCGTACGACAAGACCAAG
CCGCTGCCCGAGGCCCCGGCCGACTTGGTAGATGAGCTCAGTAGGCGATA
TGTCATGCTTTATGAACTCATCACTGGTGGTTCTTTCGAGGATTTGACGG
TAGATGGAGGCGTGACGAATGTAACTGACTCTCTAGCACAGTTTGTTGCC
GAGTTCTCCGCCGCGGCTCGGTGA
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Coding sequence (CDS) from alignment at tig00000113_pilon:162026..163699+

>Ggra10115.t1 ID=Ggra10115.t1|Name=Ggra10115.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1674bp|location=Sequence derived from alignment at tig00000113_pilon:162026..163699+ (Gracilaria gracilis GNS1m male)
ATGTCGGCTTTCATAACTTCGCTACCGCTAACTATCCACAATCGCTCCAC
GTTCACTTGTCCGCGCTCGTGCAATGCCATCAAACCGCGGCGCCCGAGTC
ATGTGTCGCTTCCCATCTCCGCGGTTCGCATGTCTGCAAAATCGTCCTCT
GCCCCACTCGTTCCAATTCTCATGGGTTCTGCTTCAGACGCAACTTTCTG
CAAGAAGATAGCTGCCGCCCTCACCAGCCTGGGTATCGAATCTGAGCTGC
GTATTGCCTCAGCTCACAAGGTTCCGCATCGCCTCCTCGACGTATTGGAA
CAGTATGAGGCCCTACCGCGTCCTAAGGTTTACATCGCCGTCGCTGGGCG
ATCAAATGCGTTATCCGGTGTTTTGGATTGTGCTGTTTCGTCTCCGGTCG
TTTCTTGTCCGCCGTATTCAGATGCATTTGGTGGAGCTGATCTATTTTCG
AGTATTCGCATGCCGTCGGGAGTGGCTCCTATGTTGGTTCTTGATGCTGG
TGGTGCAGCTTTGGCTGCTGCAAAGATTCTGGCCCTCAGTGATGAACATA
TTCGTCTCCGCGTTGATGCGTTGCAACGCGCAAATAGAGATCGTTTGTAC
GTGGATGATGCTCAGCTTGTGTCGGAAAGCTATCGCGATGCCATTGCGGA
AGTTAGATTGAATGGCCAGACGATGATCGAAACTGACGCGCAACAGCTGT
TTGGGGCCGCTAAGAAGGATGCCGTTACGTCTTCAAGAAAAGGGAAGGTT
CGCGATCAATACTCTTTTGACGGTGTAATGAATGGTTCGAAGGAACCACT
TTTGGCTTTGGTTACCACCGATAGACAAAGTGCTTTTGATCGCATTCTCG
CGGCGATTCCATTCAAGGGTGCGGTTCTTAACAAGACCGCTGCTTTTTGG
TTTGAGAACACTAAGCACATCGTTCCGAATCATGTTCTCGACGTCCCTCA
CCCGAATGTAACCATCGCGAGAAGATGCACCCCATTCCCAATTGAATTCG
TCGTCAGGGGATACATCACCGGGAGCACGTCCACGTCGTTATGGAAGAAC
TATTCGAATGGAGTGAGGAACTACTGCGGTATCCAATTCCCGGATGGTAT
GGTAAAGAATCAGAAGTTAGAATGTAACGTCATTACCCCTACCACGAAGG
AAGAAGCTGGTGATCGGCCCATCTCACCCACTGATGTCATTAAAGAACAG
TTCATGACACAAGAAGATTGGGACTACTGTGCCGATAAAGCTCTCAAGCT
GTTTGAATTCGGACAGAAAGTGGCTGGGGAAAATGGCCTGATCCTTGTCG
ACACCAAATATGAGTTTGGTAAGGACGAAGATGGTACTATTCGGCTGATC
GATGAGATTCATACCCCGGATTCATCGAGGTTCTGGCTTGCAACTTCGTA
CGGAAAACGTTTTGCAGAAGGGAAGGAACCGGAGAACGTGGATAAGGAAT
TCTTGAGGCTGTGGTTCACAGAGAATTCCGACCCGTACGACAAGACCAAG
CCGCTGCCCGAGGCCCCGGCCGACTTGGTAGATGAGCTCAGTAGGCGATA
TGTCATGCTTTATGAACTCATCACTGGTGGTTCTTTCGAGGATTTGACGG
TAGATGGAGGCGTGACGAATGTAACTGACTCTCTAGCACAGTTTGTTGCC
GAGTTCTCCGCCGCGGCTCGGTGA
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