Ggra10073.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10073.t1
Unique NameGgra10073.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:441839..442857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10073Ggra10073Gracilaria gracilis GNS1m malegenetig00000862_pilon 441839..442857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10073.t1Ggra10073.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 441839..442857 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10073.t1.stop1Ggra10073.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 441839..441841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10073.t1.CDS1Ggra10073.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 441839..442596 -
Ggra10073.t1.CDS2Ggra10073.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000862_pilon 442704..442857 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10073.t1.exon1Ggra10073.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 441839..442596 -
Ggra10073.t1.exon2Ggra10073.t1.exon2Gracilaria gracilis GNS1m maleexontig00000862_pilon 442704..442857 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10073.t1.intron1Ggra10073.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000862_pilon 442597..442703 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10073.t1.start1Ggra10073.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 442855..442857 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10073.t1 ID=Ggra10073.t1|Name=Ggra10073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MGLQNVLRGTVFPPQVGKKLLQYSLETDRDNTPGFLWYYYYSDTFPAMPS
IVLRRSRATATPMVTPGEAKTAVEAGVQAGSGRKSWDESGLAIENNASPH
SVGDTHKFFVALRAACILFREEEPATLDDALLAARAWMRRAVNVETALHE
QAQAQLNLLGYLRAHSLLVLASYEKSVMAGLGTKAGVDRTPMETSAPPLE
DLVTKSYDGIAQQSDTERIFDHIVKNMRQGAQSFFKGFELIAPNVPSGDE
PEVEGQSGDGAGPSGTIATPGGEAPQKEVTPVVEDVPMSSPSENREETET
VMV*
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spliced messenger RNA

>Ggra10073.t1 ID=Ggra10073.t1|Name=Ggra10073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000862_pilon:441839..442857- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTCCAGAACGTTCTTCGCGGCACCGTGTTCCCTCCGCAGGTCGG
CAAGAAACTGCTTCAGTACTCGTTGGAGACCGATCGGGACAACACTCCGG
GATTCTTGTGGTATTACTACTACTCCGATACGTTCCCGGCAATGCCCTCG
ATCGTACTTCGAAGAAGTAGGGCCACTGCGACTCCGATGGTTACGCCCGG
TGAGGCGAAGACCGCCGTGGAGGCTGGAGTACAAGCAGGATCCGGTCGGA
AGTCTTGGGACGAGTCCGGGTTGGCAATTGAGAACAACGCCAGTCCGCAC
TCGGTTGGTGATACGCACAAGTTCTTCGTGGCCCTCCGTGCGGCTTGCAT
TCTGTTCCGGGAGGAGGAGCCTGCGACGCTTGATGACGCCCTGTTGGCGG
CCCGAGCATGGATGCGCCGTGCGGTCAACGTCGAGACTGCTCTTCATGAG
CAGGCTCAGGCGCAGCTGAATCTGCTCGGTTACCTCCGGGCTCATTCCCT
GTTGGTCTTGGCGTCTTATGAGAAGTCCGTAATGGCTGGTCTGGGCACAA
AGGCCGGTGTGGATAGAACGCCGATGGAAACTTCCGCGCCGCCATTGGAA
GACCTGGTAACTAAGTCCTATGATGGTATAGCACAGCAGTCCGATACGGA
GCGTATTTTTGATCACATCGTTAAGAACATGCGCCAAGGGGCGCAGTCGT
TCTTCAAGGGCTTCGAGCTGATTGCGCCCAATGTTCCGTCCGGGGATGAG
CCTGAAGTCGAAGGCCAGTCCGGTGATGGCGCGGGGCCGAGCGGTACGAT
CGCGACTCCCGGCGGGGAGGCTCCGCAGAAGGAGGTGACGCCAGTGGTCG
AGGATGTCCCCATGTCGTCCCCAAGTGAAAATCGAGAGGAAACGGAGACC
GTGATGGTTTAA
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protein sequence of Ggra10073.t1

>Ggra10073.t1 ID=Ggra10073.t1|Name=Ggra10073.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MGLQNVLRGTVFPPQVGKKLLQYSLETDRDNTPGFLWYYYYSDTFPAMPS
IVLRRSRATATPMVTPGEAKTAVEAGVQAGSGRKSWDESGLAIENNASPH
SVGDTHKFFVALRAACILFREEEPATLDDALLAARAWMRRAVNVETALHE
QAQAQLNLLGYLRAHSLLVLASYEKSVMAGLGTKAGVDRTPMETSAPPLE
DLVTKSYDGIAQQSDTERIFDHIVKNMRQGAQSFFKGFELIAPNVPSGDE
PEVEGQSGDGAGPSGTIATPGGEAPQKEVTPVVEDVPMSSPSENREETET
VMV*
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mRNA from alignment at tig00000862_pilon:441839..442857-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10073.t1 ID=Ggra10073.t1|Name=Ggra10073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1019bp|location=Sequence derived from alignment at tig00000862_pilon:441839..442857- (Gracilaria gracilis GNS1m male)
ATGGGACTCCAGAACGTTCTTCGCGGCACCGTGTTCCCTCCGCAGGTCGG
CAAGAAACTGCTTCAGTACTCGTTGGAGACCGATCGGGACAACACTCCGG
GATTCTTGTGGTATTACTACTACTCCGATACGTTCCCGGCAATGCCCTCG
ATCGGTTTGGTAGCGATACCGATCACTCGCGCCCAGAAGGGTCCGGAGAG
TCTTCCCCCCTGGCCCTTCAAAACCGTTCCGGACTTCTTCCCGCATGGGT
TCATGGCGCAGTACTTCGAAGAAGTAGGGCCACTGCGACTCCGATGGTTA
CGCCCGGTGAGGCGAAGACCGCCGTGGAGGCTGGAGTACAAGCAGGATCC
GGTCGGAAGTCTTGGGACGAGTCCGGGTTGGCAATTGAGAACAACGCCAG
TCCGCACTCGGTTGGTGATACGCACAAGTTCTTCGTGGCCCTCCGTGCGG
CTTGCATTCTGTTCCGGGAGGAGGAGCCTGCGACGCTTGATGACGCCCTG
TTGGCGGCCCGAGCATGGATGCGCCGTGCGGTCAACGTCGAGACTGCTCT
TCATGAGCAGGCTCAGGCGCAGCTGAATCTGCTCGGTTACCTCCGGGCTC
ATTCCCTGTTGGTCTTGGCGTCTTATGAGAAGTCCGTAATGGCTGGTCTG
GGCACAAAGGCCGGTGTGGATAGAACGCCGATGGAAACTTCCGCGCCGCC
ATTGGAAGACCTGGTAACTAAGTCCTATGATGGTATAGCACAGCAGTCCG
ATACGGAGCGTATTTTTGATCACATCGTTAAGAACATGCGCCAAGGGGCG
CAGTCGTTCTTCAAGGGCTTCGAGCTGATTGCGCCCAATGTTCCGTCCGG
GGATGAGCCTGAAGTCGAAGGCCAGTCCGGTGATGGCGCGGGGCCGAGCG
GTACGATCGCGACTCCCGGCGGGGAGGCTCCGCAGAAGGAGGTGACGCCA
GTGGTCGAGGATGTCCCCATGTCGTCCCCAAGTGAAAATCGAGAGGAAAC
GGAGACCGTGATGGTTTAA
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Coding sequence (CDS) from alignment at tig00000862_pilon:441839..442857-

>Ggra10073.t1 ID=Ggra10073.t1|Name=Ggra10073.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000862_pilon:441839..442857- (Gracilaria gracilis GNS1m male)
ATGGGACTCCAGAACGTTCTTCGCGGCACCGTGTTCCCTCCGCAGGTCGG
CAAGAAACTGCTTCAGTACTCGTTGGAGACCGATCGGGACAACACTCCGG
GATTCTTGTGGTATTACTACTACTCCGATACGTTCCCGGCAATGCCCTCG
ATCGTACTTCGAAGAAGTAGGGCCACTGCGACTCCGATGGTTACGCCCGG
TGAGGCGAAGACCGCCGTGGAGGCTGGAGTACAAGCAGGATCCGGTCGGA
AGTCTTGGGACGAGTCCGGGTTGGCAATTGAGAACAACGCCAGTCCGCAC
TCGGTTGGTGATACGCACAAGTTCTTCGTGGCCCTCCGTGCGGCTTGCAT
TCTGTTCCGGGAGGAGGAGCCTGCGACGCTTGATGACGCCCTGTTGGCGG
CCCGAGCATGGATGCGCCGTGCGGTCAACGTCGAGACTGCTCTTCATGAG
CAGGCTCAGGCGCAGCTGAATCTGCTCGGTTACCTCCGGGCTCATTCCCT
GTTGGTCTTGGCGTCTTATGAGAAGTCCGTAATGGCTGGTCTGGGCACAA
AGGCCGGTGTGGATAGAACGCCGATGGAAACTTCCGCGCCGCCATTGGAA
GACCTGGTAACTAAGTCCTATGATGGTATAGCACAGCAGTCCGATACGGA
GCGTATTTTTGATCACATCGTTAAGAACATGCGCCAAGGGGCGCAGTCGT
TCTTCAAGGGCTTCGAGCTGATTGCGCCCAATGTTCCGTCCGGGGATGAG
CCTGAAGTCGAAGGCCAGTCCGGTGATGGCGCGGGGCCGAGCGGTACGAT
CGCGACTCCCGGCGGGGAGGCTCCGCAGAAGGAGGTGACGCCAGTGGTCG
AGGATGTCCCCATGTCGTCCCCAAGTGAAAATCGAGAGGAAACGGAGACC
GTGATGGTTTAA
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