Ggra10062.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10062.t1
Unique NameGgra10062.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:103699..104622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10062Ggra10062Gracilaria gracilis GNS1m malegenetig00000862_pilon 103699..104622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10062.t1Ggra10062.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 103699..104622 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10062.t1.start1Ggra10062.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 103699..103701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10062.t1.CDS1Ggra10062.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 103699..103777 +
Ggra10062.t1.CDS2Ggra10062.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000862_pilon 104039..104622 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10062.t1.exon1Ggra10062.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 103699..103777 +
Ggra10062.t1.exon2Ggra10062.t1.exon2Gracilaria gracilis GNS1m maleexontig00000862_pilon 104039..104622 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10062.t1.intron1Ggra10062.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000862_pilon 103778..104038 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10062.t1.stop1Ggra10062.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 104620..104622 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10062.t1 ID=Ggra10062.t1|Name=Ggra10062.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=221bp
MYHLPRTPVTLLHIHEETSSADILALGQGQNAANGNDNGMPNPYFGRGRS
HLGQAPEERVHGLPPEALMQLNRFHPPFLPFSSMTSMMGYQGQLAVQPNV
FACVPQMGVNPYLQSPGGGVYTHYWAHINPAMNGILISCNPFSVSPPTVP
RPDHEGPSFPTRPTVWQPTPQVRPEKVDTPPSAEPTKESVKNIEKPRISS
DSDMDGRAKTANEDGRSKKD*
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spliced messenger RNA

>Ggra10062.t1 ID=Ggra10062.t1|Name=Ggra10062.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000862_pilon:103699..104622+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCACCTACCACGAACCCCGGTCACCTTGCTGCACATCCATGAGGA
AACCAGCAGCGCAGACATTCTGGCCTTGGGCCAGGGGCAAAACGCTGCAA
ATGGAAATGATAATGGTATGCCCAATCCGTACTTTGGACGTGGACGTTCA
CATCTTGGTCAAGCCCCAGAGGAACGAGTTCACGGACTGCCACCAGAAGC
ACTCATGCAGCTCAACAGATTTCATCCCCCTTTTCTTCCGTTTTCTTCCA
TGACGTCGATGATGGGTTATCAAGGTCAGCTGGCAGTGCAGCCAAACGTC
TTTGCCTGTGTACCTCAAATGGGCGTGAACCCTTATCTTCAAAGTCCTGG
GGGAGGTGTGTACACTCATTATTGGGCCCATATCAACCCAGCTATGAATG
GCATCTTAATATCGTGCAACCCGTTTTCGGTCAGTCCACCTACAGTGCCT
AGGCCTGATCATGAAGGCCCATCCTTTCCGACGCGACCGACCGTGTGGCA
GCCGACTCCTCAGGTCAGACCAGAGAAAGTAGATACACCGCCGAGTGCGG
AACCAACAAAAGAATCTGTAAAGAACATCGAAAAGCCACGGATATCTTCA
GACTCTGATATGGATGGCAGGGCAAAAACTGCAAACGAAGATGGACGGTC
GAAGAAAGACTAG
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protein sequence of Ggra10062.t1

>Ggra10062.t1 ID=Ggra10062.t1|Name=Ggra10062.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MYHLPRTPVTLLHIHEETSSADILALGQGQNAANGNDNGMPNPYFGRGRS
HLGQAPEERVHGLPPEALMQLNRFHPPFLPFSSMTSMMGYQGQLAVQPNV
FACVPQMGVNPYLQSPGGGVYTHYWAHINPAMNGILISCNPFSVSPPTVP
RPDHEGPSFPTRPTVWQPTPQVRPEKVDTPPSAEPTKESVKNIEKPRISS
DSDMDGRAKTANEDGRSKKD*
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mRNA from alignment at tig00000862_pilon:103699..104622+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10062.t1 ID=Ggra10062.t1|Name=Ggra10062.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00000862_pilon:103699..104622+ (Gracilaria gracilis GNS1m male)
ATGTACCACCTACCACGAACCCCGGTCACCTTGCTGCACATCCATGAGGA
AACCAGCAGCGCAGACATTCTGGCCTTGGGTCTGCAAGACGAAACGAAAT
TTCATCCCCCATTCAACATACCACGAATATCCATACACAGAACGCGGGTA
CTCCTGGAAACAAGGAGGTTCCTAGGCGCAACAGCCTTCCTGATCCTGCA
CTATCCAACCACGAAAACAGGGTACCACATTTTGATACGGCACCCGCGGT
AGTAGGGGTTCCGCCGTTTCCTCATGCATTTGCAGTGCCCACAATTCCAC
CTGGGGGTCAACTAAGATTTGATTCCGTCAACATGAACAGGCCAGGGGCA
AAACGCTGCAAATGGAAATGATAATGGTATGCCCAATCCGTACTTTGGAC
GTGGACGTTCACATCTTGGTCAAGCCCCAGAGGAACGAGTTCACGGACTG
CCACCAGAAGCACTCATGCAGCTCAACAGATTTCATCCCCCTTTTCTTCC
GTTTTCTTCCATGACGTCGATGATGGGTTATCAAGGTCAGCTGGCAGTGC
AGCCAAACGTCTTTGCCTGTGTACCTCAAATGGGCGTGAACCCTTATCTT
CAAAGTCCTGGGGGAGGTGTGTACACTCATTATTGGGCCCATATCAACCC
AGCTATGAATGGCATCTTAATATCGTGCAACCCGTTTTCGGTCAGTCCAC
CTACAGTGCCTAGGCCTGATCATGAAGGCCCATCCTTTCCGACGCGACCG
ACCGTGTGGCAGCCGACTCCTCAGGTCAGACCAGAGAAAGTAGATACACC
GCCGAGTGCGGAACCAACAAAAGAATCTGTAAAGAACATCGAAAAGCCAC
GGATATCTTCAGACTCTGATATGGATGGCAGGGCAAAAACTGCAAACGAA
GATGGACGGTCGAAGAAAGACTAG
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Coding sequence (CDS) from alignment at tig00000862_pilon:103699..104622+

>Ggra10062.t1 ID=Ggra10062.t1|Name=Ggra10062.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00000862_pilon:103699..104622+ (Gracilaria gracilis GNS1m male)
ATGTACCACCTACCACGAACCCCGGTCACCTTGCTGCACATCCATGAGGA
AACCAGCAGCGCAGACATTCTGGCCTTGGGCCAGGGGCAAAACGCTGCAA
ATGGAAATGATAATGGTATGCCCAATCCGTACTTTGGACGTGGACGTTCA
CATCTTGGTCAAGCCCCAGAGGAACGAGTTCACGGACTGCCACCAGAAGC
ACTCATGCAGCTCAACAGATTTCATCCCCCTTTTCTTCCGTTTTCTTCCA
TGACGTCGATGATGGGTTATCAAGGTCAGCTGGCAGTGCAGCCAAACGTC
TTTGCCTGTGTACCTCAAATGGGCGTGAACCCTTATCTTCAAAGTCCTGG
GGGAGGTGTGTACACTCATTATTGGGCCCATATCAACCCAGCTATGAATG
GCATCTTAATATCGTGCAACCCGTTTTCGGTCAGTCCACCTACAGTGCCT
AGGCCTGATCATGAAGGCCCATCCTTTCCGACGCGACCGACCGTGTGGCA
GCCGACTCCTCAGGTCAGACCAGAGAAAGTAGATACACCGCCGAGTGCGG
AACCAACAAAAGAATCTGTAAAGAACATCGAAAAGCCACGGATATCTTCA
GACTCTGATATGGATGGCAGGGCAAAAACTGCAAACGAAGATGGACGGTC
GAAGAAAGACTAG
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