Ggra10058.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10058.t1
Unique NameGgra10058.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:29343..30530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10058Ggra10058Gracilaria gracilis GNS1m malegenetig00000862_pilon 29343..30530 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10058.t1.start1Ggra10058.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 29343..29345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10058.t1.CDS1Ggra10058.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 29343..30530 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10058.t1.exon1Ggra10058.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 29343..30530 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10058.t1.stop1Ggra10058.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 30528..30530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10058.t1Ggra10058.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 29343..30530 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10058.t1 ID=Ggra10058.t1|Name=Ggra10058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=396bp
MSFFFKLALCSLLFHSVLGSAPCDPGWGTTWNDYGLCEICKPGFYDNGIG
FCQICRSGTYQPESGHTECNRCPSGTYSGHGFESCVSCPEGEVYVESSAR
CGLCPAGEYFDTGVQRCTYCSPGFFKAEEGLRPCLPCPPNTNSVYSATEC
IACPEGQALMKDGTCGTCPAGQHYDEFDNDCYDCLPGEYTETENVLPKCY
KCGGNSFSPAAASQCFECPDGEVFIKDSGECGHCDIGQHYHESDLSCHDC
SLNSFSHGSNRRTCRICLPGSFARPRSSTCFLCPAGQVYLVQTDQCGECP
EGTQYISHGARCDGDPNGMPSPEPVEELIISPSPDPVEEVLISSSPIPGL
DLETDYEEILDLESPKPELGLGIEYGEFMDIEMGTPEPSAEIILL*
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spliced messenger RNA

>Ggra10058.t1 ID=Ggra10058.t1|Name=Ggra10058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000862_pilon:29343..30530+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTCTTTTTCAAACTTGCGTTATGTTCCCTTCTCTTTCACTCTGT
GCTGGGAAGTGCACCTTGTGACCCAGGATGGGGAACCACTTGGAATGACT
ATGGTCTTTGCGAAATCTGCAAACCGGGTTTCTACGACAATGGTATAGGG
TTTTGTCAAATATGTCGCTCGGGAACTTATCAGCCCGAATCCGGCCACAC
GGAATGCAATCGTTGCCCTTCCGGTACATACTCCGGACATGGGTTTGAAT
CTTGTGTATCTTGCCCTGAAGGCGAAGTGTATGTAGAATCTTCTGCGCGC
TGTGGGCTGTGTCCTGCCGGGGAATACTTCGATACTGGTGTTCAACGCTG
TACCTATTGCAGCCCGGGATTCTTTAAAGCTGAAGAGGGCTTGCGTCCGT
GCCTCCCTTGTCCTCCCAACACCAATTCTGTGTACTCCGCTACCGAATGC
ATTGCTTGTCCGGAGGGACAGGCGTTGATGAAGGATGGAACGTGTGGAAC
ATGCCCGGCTGGACAGCACTACGACGAATTCGACAACGACTGTTATGATT
GCCTTCCTGGTGAGTACACTGAGACAGAGAATGTGCTTCCAAAATGCTAC
AAGTGCGGTGGCAACTCCTTTTCGCCGGCAGCTGCCTCCCAATGCTTTGA
ATGCCCAGACGGGGAGGTGTTTATCAAAGACTCAGGTGAATGTGGGCATT
GTGATATAGGGCAACATTATCACGAGAGTGATCTTTCTTGTCATGACTGT
TCGTTGAATTCGTTCAGTCATGGCTCAAACCGCCGAACCTGTCGGATATG
TCTGCCCGGTAGTTTTGCAAGACCTAGATCATCTACTTGCTTCCTTTGCC
CAGCAGGACAGGTTTATCTGGTTCAAACAGACCAATGTGGCGAATGTCCT
GAAGGAACACAATACATTTCTCATGGAGCTCGCTGTGATGGGGACCCGAA
CGGAATGCCGTCCCCGGAGCCAGTCGAGGAATTGATCATTTCTCCGTCCC
CAGACCCAGTTGAAGAAGTCCTCATTTCTTCTTCTCCGATACCAGGGCTT
GACCTCGAGACTGATTATGAAGAAATTCTAGATCTAGAATCGCCGAAACC
AGAGCTCGGCCTTGGGATTGAATATGGGGAATTTATGGATATAGAGATGG
GGACTCCTGAGCCATCGGCAGAGATAATTTTACTTTGA
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protein sequence of Ggra10058.t1

>Ggra10058.t1 ID=Ggra10058.t1|Name=Ggra10058.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=396bp
MSFFFKLALCSLLFHSVLGSAPCDPGWGTTWNDYGLCEICKPGFYDNGIG
FCQICRSGTYQPESGHTECNRCPSGTYSGHGFESCVSCPEGEVYVESSAR
CGLCPAGEYFDTGVQRCTYCSPGFFKAEEGLRPCLPCPPNTNSVYSATEC
IACPEGQALMKDGTCGTCPAGQHYDEFDNDCYDCLPGEYTETENVLPKCY
KCGGNSFSPAAASQCFECPDGEVFIKDSGECGHCDIGQHYHESDLSCHDC
SLNSFSHGSNRRTCRICLPGSFARPRSSTCFLCPAGQVYLVQTDQCGECP
EGTQYISHGARCDGDPNGMPSPEPVEELIISPSPDPVEEVLISSSPIPGL
DLETDYEEILDLESPKPELGLGIEYGEFMDIEMGTPEPSAEIILL*
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mRNA from alignment at tig00000862_pilon:29343..30530+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10058.t1 ID=Ggra10058.t1|Name=Ggra10058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000862_pilon:29343..30530+ (Gracilaria gracilis GNS1m male)
ATGTCGTTCTTTTTCAAACTTGCGTTATGTTCCCTTCTCTTTCACTCTGT
GCTGGGAAGTGCACCTTGTGACCCAGGATGGGGAACCACTTGGAATGACT
ATGGTCTTTGCGAAATCTGCAAACCGGGTTTCTACGACAATGGTATAGGG
TTTTGTCAAATATGTCGCTCGGGAACTTATCAGCCCGAATCCGGCCACAC
GGAATGCAATCGTTGCCCTTCCGGTACATACTCCGGACATGGGTTTGAAT
CTTGTGTATCTTGCCCTGAAGGCGAAGTGTATGTAGAATCTTCTGCGCGC
TGTGGGCTGTGTCCTGCCGGGGAATACTTCGATACTGGTGTTCAACGCTG
TACCTATTGCAGCCCGGGATTCTTTAAAGCTGAAGAGGGCTTGCGTCCGT
GCCTCCCTTGTCCTCCCAACACCAATTCTGTGTACTCCGCTACCGAATGC
ATTGCTTGTCCGGAGGGACAGGCGTTGATGAAGGATGGAACGTGTGGAAC
ATGCCCGGCTGGACAGCACTACGACGAATTCGACAACGACTGTTATGATT
GCCTTCCTGGTGAGTACACTGAGACAGAGAATGTGCTTCCAAAATGCTAC
AAGTGCGGTGGCAACTCCTTTTCGCCGGCAGCTGCCTCCCAATGCTTTGA
ATGCCCAGACGGGGAGGTGTTTATCAAAGACTCAGGTGAATGTGGGCATT
GTGATATAGGGCAACATTATCACGAGAGTGATCTTTCTTGTCATGACTGT
TCGTTGAATTCGTTCAGTCATGGCTCAAACCGCCGAACCTGTCGGATATG
TCTGCCCGGTAGTTTTGCAAGACCTAGATCATCTACTTGCTTCCTTTGCC
CAGCAGGACAGGTTTATCTGGTTCAAACAGACCAATGTGGCGAATGTCCT
GAAGGAACACAATACATTTCTCATGGAGCTCGCTGTGATGGGGACCCGAA
CGGAATGCCGTCCCCGGAGCCAGTCGAGGAATTGATCATTTCTCCGTCCC
CAGACCCAGTTGAAGAAGTCCTCATTTCTTCTTCTCCGATACCAGGGCTT
GACCTCGAGACTGATTATGAAGAAATTCTAGATCTAGAATCGCCGAAACC
AGAGCTCGGCCTTGGGATTGAATATGGGGAATTTATGGATATAGAGATGG
GGACTCCTGAGCCATCGGCAGAGATAATTTTACTTTGA
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Coding sequence (CDS) from alignment at tig00000862_pilon:29343..30530+

>Ggra10058.t1 ID=Ggra10058.t1|Name=Ggra10058.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00000862_pilon:29343..30530+ (Gracilaria gracilis GNS1m male)
ATGTCGTTCTTTTTCAAACTTGCGTTATGTTCCCTTCTCTTTCACTCTGT
GCTGGGAAGTGCACCTTGTGACCCAGGATGGGGAACCACTTGGAATGACT
ATGGTCTTTGCGAAATCTGCAAACCGGGTTTCTACGACAATGGTATAGGG
TTTTGTCAAATATGTCGCTCGGGAACTTATCAGCCCGAATCCGGCCACAC
GGAATGCAATCGTTGCCCTTCCGGTACATACTCCGGACATGGGTTTGAAT
CTTGTGTATCTTGCCCTGAAGGCGAAGTGTATGTAGAATCTTCTGCGCGC
TGTGGGCTGTGTCCTGCCGGGGAATACTTCGATACTGGTGTTCAACGCTG
TACCTATTGCAGCCCGGGATTCTTTAAAGCTGAAGAGGGCTTGCGTCCGT
GCCTCCCTTGTCCTCCCAACACCAATTCTGTGTACTCCGCTACCGAATGC
ATTGCTTGTCCGGAGGGACAGGCGTTGATGAAGGATGGAACGTGTGGAAC
ATGCCCGGCTGGACAGCACTACGACGAATTCGACAACGACTGTTATGATT
GCCTTCCTGGTGAGTACACTGAGACAGAGAATGTGCTTCCAAAATGCTAC
AAGTGCGGTGGCAACTCCTTTTCGCCGGCAGCTGCCTCCCAATGCTTTGA
ATGCCCAGACGGGGAGGTGTTTATCAAAGACTCAGGTGAATGTGGGCATT
GTGATATAGGGCAACATTATCACGAGAGTGATCTTTCTTGTCATGACTGT
TCGTTGAATTCGTTCAGTCATGGCTCAAACCGCCGAACCTGTCGGATATG
TCTGCCCGGTAGTTTTGCAAGACCTAGATCATCTACTTGCTTCCTTTGCC
CAGCAGGACAGGTTTATCTGGTTCAAACAGACCAATGTGGCGAATGTCCT
GAAGGAACACAATACATTTCTCATGGAGCTCGCTGTGATGGGGACCCGAA
CGGAATGCCGTCCCCGGAGCCAGTCGAGGAATTGATCATTTCTCCGTCCC
CAGACCCAGTTGAAGAAGTCCTCATTTCTTCTTCTCCGATACCAGGGCTT
GACCTCGAGACTGATTATGAAGAAATTCTAGATCTAGAATCGCCGAAACC
AGAGCTCGGCCTTGGGATTGAATATGGGGAATTTATGGATATAGAGATGG
GGACTCCTGAGCCATCGGCAGAGATAATTTTACTTTGA
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