Ggra10057.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10057.t1
Unique NameGgra10057.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:23590..24984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog319224.Sputcn32_0057
PFAMsAbhydrolase_1,Abhydrolase_4
Max annot lvl1236|Gammaproteobacteria
Evalue1.11e-24
EggNOG OGsCOG0596@1|root,COG0596@2|Bacteria,1R6KU@1224|Proteobacteria,1RNTQ@1236|Gammaproteobacteria,2QAGI@267890|Shewanellaceae
DescriptionPFAM alpha beta hydrolase fold
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10057Ggra10057Gracilaria gracilis GNS1m malegenetig00000862_pilon 23590..24984 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10057.t1.stop1Ggra10057.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 23590..23592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10057.t1.CDS1Ggra10057.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 23590..24984 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10057.t1.exon1Ggra10057.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 23590..24984 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10057.t1.start1Ggra10057.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 24982..24984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10057.t1Ggra10057.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 23590..24984 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10057.t1 ID=Ggra10057.t1|Name=Ggra10057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp
MVPSSFLLLLPFLVLPSLVSAVLEPIPCPLHLSNSTCGKLSVPLDHANPA
DSVNISILYAITYPSIQTNSSSAFVFIQGGPGLSVLEHRTEGLASLELVN
AMKRPVILFDQRGTGNASLLNCSLQAKPFSMLSFDLDLLDTQRCLSQIGD
DVLHYSVTAIVNDLETLRKALGFEQLDLFGISYGTLISQAYGVLYPDSVR
SILLDSPVPMRYKDIYQVRHHSAYARIHAEKNKYNPNFSPAEFNDQMKTV
LRRLRWNRALREDLRMNPRQLFQMYRFTFDSLADAVSMAADKKNYTALTE
IAKYMEPSSTPLRSFSVAMAVSTLCNSIVDLVPWDVDAPLLERLGTLVYD
VLHRVGLRDFSPFYMTEGFESMAKHCPAMPFRQLRREGLPLDKGPQKEIP
TLVLVGDLDSLTPIEDVVDLDPVFKKNVAVVKGAGHAVSLHPCGDHLFLE
FAIDGLVRNLSVCE*
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spliced messenger RNA

>Ggra10057.t1 ID=Ggra10057.t1|Name=Ggra10057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000862_pilon:23590..24984- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCCTCTTCGTTCTTGCTCCTCCTTCCTTTCCTTGTGCTTCCCTC
TTTGGTCTCCGCCGTGTTAGAGCCCATTCCCTGCCCACTTCATCTTTCCA
ATTCGACTTGCGGGAAGCTCTCTGTGCCCCTCGACCATGCCAATCCTGCT
GATTCTGTCAACATATCCATTCTTTACGCCATAACATATCCTTCCATCCA
AACAAACTCTAGCAGTGCGTTTGTTTTCATTCAAGGAGGTCCTGGTCTCA
GCGTCTTGGAACATCGGACAGAGGGACTTGCATCTCTGGAGCTCGTGAAT
GCCATGAAACGCCCCGTGATCTTGTTTGATCAACGTGGCACTGGAAACGC
TTCTCTCCTCAATTGTTCGCTGCAGGCCAAGCCCTTCTCAATGCTCTCAT
TTGACCTTGACCTTCTCGATACTCAGAGATGTCTCTCGCAGATTGGAGAT
GACGTTCTCCACTACTCCGTGACTGCCATTGTGAATGATCTGGAAACGCT
CCGGAAGGCCCTCGGTTTTGAACAGCTGGATCTATTTGGCATATCATACG
GTACTCTCATATCACAAGCTTATGGCGTACTGTATCCCGACAGCGTTCGC
TCCATTCTGCTTGATTCACCTGTTCCTATGCGGTACAAAGACATTTATCA
AGTGCGTCACCATTCCGCATATGCTCGAATTCACGCGGAGAAGAACAAAT
ACAATCCAAACTTTTCTCCAGCGGAGTTCAATGACCAGATGAAGACTGTT
CTCCGCCGTCTACGTTGGAACAGAGCTTTGCGAGAGGATCTGAGGATGAA
CCCGAGACAGTTGTTCCAGATGTACCGATTCACATTCGATTCTTTGGCTG
ATGCGGTTTCCATGGCTGCAGATAAAAAGAACTACACCGCCTTGACGGAA
ATTGCGAAATACATGGAGCCTTCGAGCACACCTCTGCGTAGTTTCTCCGT
CGCAATGGCCGTTTCCACCCTCTGCAACAGCATAGTGGATCTGGTTCCAT
GGGATGTGGACGCACCGTTGCTCGAAAGGCTTGGAACGCTTGTGTACGAT
GTGCTTCATAGAGTGGGGCTTCGAGACTTCTCTCCATTCTACATGACAGA
AGGATTCGAGTCAATGGCAAAGCACTGTCCCGCAATGCCTTTCCGTCAAT
TAAGGAGGGAAGGGCTCCCTCTCGACAAGGGACCGCAGAAAGAAATTCCA
ACTCTGGTTCTTGTCGGCGATCTGGATTCCTTAACCCCGATAGAAGACGT
CGTGGATTTGGACCCTGTATTTAAGAAGAATGTGGCAGTTGTCAAAGGAG
CGGGTCATGCTGTGAGTCTCCACCCGTGCGGGGATCATCTGTTTTTGGAG
TTTGCCATTGACGGATTGGTAAGGAACCTGTCGGTTTGTGAATAG
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protein sequence of Ggra10057.t1

>Ggra10057.t1 ID=Ggra10057.t1|Name=Ggra10057.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MVPSSFLLLLPFLVLPSLVSAVLEPIPCPLHLSNSTCGKLSVPLDHANPA
DSVNISILYAITYPSIQTNSSSAFVFIQGGPGLSVLEHRTEGLASLELVN
AMKRPVILFDQRGTGNASLLNCSLQAKPFSMLSFDLDLLDTQRCLSQIGD
DVLHYSVTAIVNDLETLRKALGFEQLDLFGISYGTLISQAYGVLYPDSVR
SILLDSPVPMRYKDIYQVRHHSAYARIHAEKNKYNPNFSPAEFNDQMKTV
LRRLRWNRALREDLRMNPRQLFQMYRFTFDSLADAVSMAADKKNYTALTE
IAKYMEPSSTPLRSFSVAMAVSTLCNSIVDLVPWDVDAPLLERLGTLVYD
VLHRVGLRDFSPFYMTEGFESMAKHCPAMPFRQLRREGLPLDKGPQKEIP
TLVLVGDLDSLTPIEDVVDLDPVFKKNVAVVKGAGHAVSLHPCGDHLFLE
FAIDGLVRNLSVCE*
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mRNA from alignment at tig00000862_pilon:23590..24984-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10057.t1 ID=Ggra10057.t1|Name=Ggra10057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000862_pilon:23590..24984- (Gracilaria gracilis GNS1m male)
ATGGTGCCCTCTTCGTTCTTGCTCCTCCTTCCTTTCCTTGTGCTTCCCTC
TTTGGTCTCCGCCGTGTTAGAGCCCATTCCCTGCCCACTTCATCTTTCCA
ATTCGACTTGCGGGAAGCTCTCTGTGCCCCTCGACCATGCCAATCCTGCT
GATTCTGTCAACATATCCATTCTTTACGCCATAACATATCCTTCCATCCA
AACAAACTCTAGCAGTGCGTTTGTTTTCATTCAAGGAGGTCCTGGTCTCA
GCGTCTTGGAACATCGGACAGAGGGACTTGCATCTCTGGAGCTCGTGAAT
GCCATGAAACGCCCCGTGATCTTGTTTGATCAACGTGGCACTGGAAACGC
TTCTCTCCTCAATTGTTCGCTGCAGGCCAAGCCCTTCTCAATGCTCTCAT
TTGACCTTGACCTTCTCGATACTCAGAGATGTCTCTCGCAGATTGGAGAT
GACGTTCTCCACTACTCCGTGACTGCCATTGTGAATGATCTGGAAACGCT
CCGGAAGGCCCTCGGTTTTGAACAGCTGGATCTATTTGGCATATCATACG
GTACTCTCATATCACAAGCTTATGGCGTACTGTATCCCGACAGCGTTCGC
TCCATTCTGCTTGATTCACCTGTTCCTATGCGGTACAAAGACATTTATCA
AGTGCGTCACCATTCCGCATATGCTCGAATTCACGCGGAGAAGAACAAAT
ACAATCCAAACTTTTCTCCAGCGGAGTTCAATGACCAGATGAAGACTGTT
CTCCGCCGTCTACGTTGGAACAGAGCTTTGCGAGAGGATCTGAGGATGAA
CCCGAGACAGTTGTTCCAGATGTACCGATTCACATTCGATTCTTTGGCTG
ATGCGGTTTCCATGGCTGCAGATAAAAAGAACTACACCGCCTTGACGGAA
ATTGCGAAATACATGGAGCCTTCGAGCACACCTCTGCGTAGTTTCTCCGT
CGCAATGGCCGTTTCCACCCTCTGCAACAGCATAGTGGATCTGGTTCCAT
GGGATGTGGACGCACCGTTGCTCGAAAGGCTTGGAACGCTTGTGTACGAT
GTGCTTCATAGAGTGGGGCTTCGAGACTTCTCTCCATTCTACATGACAGA
AGGATTCGAGTCAATGGCAAAGCACTGTCCCGCAATGCCTTTCCGTCAAT
TAAGGAGGGAAGGGCTCCCTCTCGACAAGGGACCGCAGAAAGAAATTCCA
ACTCTGGTTCTTGTCGGCGATCTGGATTCCTTAACCCCGATAGAAGACGT
CGTGGATTTGGACCCTGTATTTAAGAAGAATGTGGCAGTTGTCAAAGGAG
CGGGTCATGCTGTGAGTCTCCACCCGTGCGGGGATCATCTGTTTTTGGAG
TTTGCCATTGACGGATTGGTAAGGAACCTGTCGGTTTGTGAATAG
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Coding sequence (CDS) from alignment at tig00000862_pilon:23590..24984-

>Ggra10057.t1 ID=Ggra10057.t1|Name=Ggra10057.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00000862_pilon:23590..24984- (Gracilaria gracilis GNS1m male)
ATGGTGCCCTCTTCGTTCTTGCTCCTCCTTCCTTTCCTTGTGCTTCCCTC
TTTGGTCTCCGCCGTGTTAGAGCCCATTCCCTGCCCACTTCATCTTTCCA
ATTCGACTTGCGGGAAGCTCTCTGTGCCCCTCGACCATGCCAATCCTGCT
GATTCTGTCAACATATCCATTCTTTACGCCATAACATATCCTTCCATCCA
AACAAACTCTAGCAGTGCGTTTGTTTTCATTCAAGGAGGTCCTGGTCTCA
GCGTCTTGGAACATCGGACAGAGGGACTTGCATCTCTGGAGCTCGTGAAT
GCCATGAAACGCCCCGTGATCTTGTTTGATCAACGTGGCACTGGAAACGC
TTCTCTCCTCAATTGTTCGCTGCAGGCCAAGCCCTTCTCAATGCTCTCAT
TTGACCTTGACCTTCTCGATACTCAGAGATGTCTCTCGCAGATTGGAGAT
GACGTTCTCCACTACTCCGTGACTGCCATTGTGAATGATCTGGAAACGCT
CCGGAAGGCCCTCGGTTTTGAACAGCTGGATCTATTTGGCATATCATACG
GTACTCTCATATCACAAGCTTATGGCGTACTGTATCCCGACAGCGTTCGC
TCCATTCTGCTTGATTCACCTGTTCCTATGCGGTACAAAGACATTTATCA
AGTGCGTCACCATTCCGCATATGCTCGAATTCACGCGGAGAAGAACAAAT
ACAATCCAAACTTTTCTCCAGCGGAGTTCAATGACCAGATGAAGACTGTT
CTCCGCCGTCTACGTTGGAACAGAGCTTTGCGAGAGGATCTGAGGATGAA
CCCGAGACAGTTGTTCCAGATGTACCGATTCACATTCGATTCTTTGGCTG
ATGCGGTTTCCATGGCTGCAGATAAAAAGAACTACACCGCCTTGACGGAA
ATTGCGAAATACATGGAGCCTTCGAGCACACCTCTGCGTAGTTTCTCCGT
CGCAATGGCCGTTTCCACCCTCTGCAACAGCATAGTGGATCTGGTTCCAT
GGGATGTGGACGCACCGTTGCTCGAAAGGCTTGGAACGCTTGTGTACGAT
GTGCTTCATAGAGTGGGGCTTCGAGACTTCTCTCCATTCTACATGACAGA
AGGATTCGAGTCAATGGCAAAGCACTGTCCCGCAATGCCTTTCCGTCAAT
TAAGGAGGGAAGGGCTCCCTCTCGACAAGGGACCGCAGAAAGAAATTCCA
ACTCTGGTTCTTGTCGGCGATCTGGATTCCTTAACCCCGATAGAAGACGT
CGTGGATTTGGACCCTGTATTTAAGAAGAATGTGGCAGTTGTCAAAGGAG
CGGGTCATGCTGTGAGTCTCCACCCGTGCGGGGATCATCTGTTTTTGGAG
TTTGCCATTGACGGATTGGTAAGGAACCTGTCGGTTTGTGAATAG
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