Ggra10056.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10056.t1
Unique NameGgra10056.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length86
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:21369..21842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10056Ggra10056Gracilaria gracilis GNS1m malegenetig00000862_pilon 21369..21842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10056.t1Ggra10056.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 21369..21842 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10056.t1.stop1Ggra10056.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 21369..21371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10056.t1.CDS1Ggra10056.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 21369..21381 -
Ggra10056.t1.CDS2Ggra10056.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000862_pilon 21598..21842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10056.t1.exon1Ggra10056.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 21369..21381 -
Ggra10056.t1.exon2Ggra10056.t1.exon2Gracilaria gracilis GNS1m maleexontig00000862_pilon 21598..21842 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10056.t1.intron1Ggra10056.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000862_pilon 21382..21597 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10056.t1.start1Ggra10056.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 21840..21842 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10056.t1 ID=Ggra10056.t1|Name=Ggra10056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=86bp
MASSDEYRAIAMGDHAGLSSLSSSVKKKNWTYVIGAVLLVVSTALVTAHV
TTGQYQYSAPYGVRAVPTFAPSRFVDRYTASKSSG*
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spliced messenger RNA

>Ggra10056.t1 ID=Ggra10056.t1|Name=Ggra10056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp|location=Sequence derived from alignment at tig00000862_pilon:21369..21842- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCTCCGATGAATACCGCGCTATTGCTATGGGCGACCATGCTGG
TCTCTCCTCACTTTCATCCTCAGTCAAAAAGAAGAACTGGACGTACGTAA
TTGGCGCCGTTCTGCTGGTTGTGAGTACAGCTTTGGTGACTGCCCACGTT
ACCACTGGTCAATATCAGTATTCCGCACCGTATGGCGTGAGAGCCGTCCC
GACCTTCGCACCGTCTCGTTTCGTGGATAGGTACACGGCGTCGAAGTCCA
GCGGCTGA
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protein sequence of Ggra10056.t1

>Ggra10056.t1 ID=Ggra10056.t1|Name=Ggra10056.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=86bp
MASSDEYRAIAMGDHAGLSSLSSSVKKKNWTYVIGAVLLVVSTALVTAHV
TTGQYQYSAPYGVRAVPTFAPSRFVDRYTASKSSG*
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mRNA from alignment at tig00000862_pilon:21369..21842-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10056.t1 ID=Ggra10056.t1|Name=Ggra10056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp|location=Sequence derived from alignment at tig00000862_pilon:21369..21842- (Gracilaria gracilis GNS1m male)
ATGGCTTCCTCCGATGAATACCGCGCTATTGCTATGGGCGACCATGCTGG
TCTCTCCTCACTTTCATCCTCAGTCAAAAAGAAGAACTGGACGTACGTAA
TTGGCGCCGTTCTGCTGGTTGTGAGTACAGCTTTGGTGACTGCCCACGTT
ACCACTGGTCAATATCAGTATTCCGCACCGTATGGCGTGAGAGCCGTCCC
GACCTTCGCACCGTCTCGTTTCGTGGATAGGTACACGGCGTCGAAGTCCA
GCGGCGGTCCTTTTTACGACAAGGAGTTTCTTGATGTGGCTCGTGGTATG
GTTGACGATATATGTAACTCAATCAAGTACACCTCGTGCACGTATTCGGG
TGCCCGAGACACTAATTGGTGCAAGATCTGCAGCAATTATAATTAACCAC
TAGATAGGCGCAGGCCAATGTGGATTGCTGTGGAGTTCACACGCTGGTGA
GGGCCAAAGAGGTCCAGCGGCTGA
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Coding sequence (CDS) from alignment at tig00000862_pilon:21369..21842-

>Ggra10056.t1 ID=Ggra10056.t1|Name=Ggra10056.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=258bp|location=Sequence derived from alignment at tig00000862_pilon:21369..21842- (Gracilaria gracilis GNS1m male)
ATGGCTTCCTCCGATGAATACCGCGCTATTGCTATGGGCGACCATGCTGG
TCTCTCCTCACTTTCATCCTCAGTCAAAAAGAAGAACTGGACGTACGTAA
TTGGCGCCGTTCTGCTGGTTGTGAGTACAGCTTTGGTGACTGCCCACGTT
ACCACTGGTCAATATCAGTATTCCGCACCGTATGGCGTGAGAGCCGTCCC
GACCTTCGCACCGTCTCGTTTCGTGGATAGGTACACGGCGTCGAAGTCCA
GCGGCTGA
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