Ggra10055.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10055.t1
Unique NameGgra10055.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length481
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:17466..19132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1125971.ASJB01000061_gene4294
PFAMsPeptidase_M14
Max annot lvl2|Bacteria
Evalue2.54e-11
EggNOG OGsCOG2866@1|root,COG2866@2|Bacteria
Descriptionmetallocarboxypeptidase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10055Ggra10055Gracilaria gracilis GNS1m malegenetig00000862_pilon 17466..19132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10055.t1Ggra10055.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 17466..19132 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10055.t1.stop1Ggra10055.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 17466..17468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10055.t1.CDS1Ggra10055.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 17466..18011 -
Ggra10055.t1.CDS2Ggra10055.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000862_pilon 18236..19132 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10055.t1.exon1Ggra10055.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 17466..18011 -
Ggra10055.t1.exon2Ggra10055.t1.exon2Gracilaria gracilis GNS1m maleexontig00000862_pilon 18236..19132 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10055.t1.intron1Ggra10055.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000862_pilon 18012..18235 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10055.t1.start1Ggra10055.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 19130..19132 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10055.t1 ID=Ggra10055.t1|Name=Ggra10055.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=481bp
MRCHIFVALICFVSCWPPTRATQFKRPLCNTFDPQCGMTPERAFQTLLTP
NDQLLPKLLEFKRRARFRIQVGPLIYNDGNDGIINIDEALSPTFPAVNTS
ICGTNSNPTIREAVICTVTNDVVQPLRGNVNASRIGYSTQGRPLLAVRFG
NQHGIPVFIVTQQHGNEPASTEAIFKFLGVLQAKPRLRMKLLRVMNILIL
IRANRDGGEPTGTFNIPVAPFSGTEAFFRHNVDPTAGGGFAVDSEPGFFG
VVGRGYDINRYHYNKLDGPIRPVENTGYGRRTAGFPPSCYHRHAWGLSEM
ILRRAISGIVSKLQPRVVGTLSRYSQLALGTAVLEGRSLGLTGEELGTIG
TGWEVVNFGAAFRPAASSVRIVDGNPVPEISAETYIPEPCFLRDNICLHE
LFLRTSLLTIVNAGKSSTAPTGEVEFCDIPLASGLIASAPSSLGWANLSV
ESEQLVPLGMYPAASAAIPASCPRDFGFEA*
back to top

spliced messenger RNA

>Ggra10055.t1 ID=Ggra10055.t1|Name=Ggra10055.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000862_pilon:17466..19132- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTGCCATATCTTCGTAGCTCTGATATGCTTCGTCTCATGCTGGCC
CCCTACAAGAGCGACTCAATTCAAGCGCCCGCTCTGCAATACCTTCGACC
CACAATGTGGTATGACTCCGGAACGAGCATTTCAGACACTACTCACTCCA
AACGACCAGCTGCTTCCGAAATTACTCGAATTCAAACGCCGCGCTCGTTT
TCGAATACAAGTTGGGCCGCTGATCTACAATGATGGCAATGACGGGATCA
TAAACATAGACGAAGCGCTGTCTCCCACTTTTCCGGCAGTCAATACTTCT
ATTTGCGGGACTAACAGCAACCCAACGATCAGAGAGGCTGTTATTTGCAC
AGTGACAAACGATGTTGTGCAGCCCCTTCGAGGAAACGTTAACGCTTCAC
GGATTGGATATTCAACACAAGGACGTCCTTTACTTGCAGTTCGCTTTGGC
AATCAGCACGGGATACCCGTCTTTATCGTTACCCAGCAACATGGTAACGA
GCCCGCTTCTACAGAGGCTATCTTCAAGTTTCTAGGAGTTCTTCAGGCGA
AACCCCGTCTTCGAATGAAACTGCTGCGAGTTATGAACATACTCATCTTG
ATTCGAGCCAACCGAGATGGTGGAGAGCCTACAGGGACTTTCAACATTCC
TGTTGCCCCGTTTAGTGGGACTGAAGCATTCTTTCGCCATAACGTTGACC
CTACTGCTGGGGGTGGCTTTGCGGTAGATTCTGAACCTGGATTCTTTGGG
GTTGTTGGTCGTGGTTATGATATCAATCGATATCATTATAACAAACTCGA
TGGACCAATCAGACCTGTTGAAAACACAGGCTATGGTCGCCGCACAGCTG
GCTTTCCGCCCTCGTGTTACCATCGACATGCATGGGGACTTTCAGAAATG
ATATTGAGAAGAGCTATATCAGGGATCGTTAGCAAGCTGCAACCCAGAGT
TGTCGGGACTTTGTCTCGATACAGTCAGCTTGCCCTTGGCACTGCTGTAT
TGGAAGGTCGTTCACTGGGACTCACGGGTGAAGAACTCGGAACTATTGGT
ACAGGGTGGGAAGTAGTGAATTTTGGGGCTGCATTTCGTCCGGCTGCTTC
ATCTGTGAGGATTGTCGATGGCAACCCCGTGCCGGAAATTTCGGCCGAGA
CCTACATACCGGAACCGTGCTTTCTACGCGATAACATTTGTCTTCACGAG
CTCTTTCTGCGTACATCACTGTTAACGATTGTGAACGCCGGGAAGAGTTC
TACTGCTCCGACAGGGGAAGTAGAATTCTGTGACATTCCGCTTGCAAGCG
GACTCATAGCGTCTGCGCCATCCTCTTTGGGATGGGCTAATCTAAGCGTG
GAAAGTGAGCAGCTAGTGCCCTTGGGAATGTATCCAGCTGCAAGTGCTGC
CATTCCTGCATCTTGTCCAAGAGATTTCGGGTTTGAAGCGTAG
back to top

protein sequence of Ggra10055.t1

>Ggra10055.t1 ID=Ggra10055.t1|Name=Ggra10055.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=481bp
MRCHIFVALICFVSCWPPTRATQFKRPLCNTFDPQCGMTPERAFQTLLTP
NDQLLPKLLEFKRRARFRIQVGPLIYNDGNDGIINIDEALSPTFPAVNTS
ICGTNSNPTIREAVICTVTNDVVQPLRGNVNASRIGYSTQGRPLLAVRFG
NQHGIPVFIVTQQHGNEPASTEAIFKFLGVLQAKPRLRMKLLRVMNILIL
IRANRDGGEPTGTFNIPVAPFSGTEAFFRHNVDPTAGGGFAVDSEPGFFG
VVGRGYDINRYHYNKLDGPIRPVENTGYGRRTAGFPPSCYHRHAWGLSEM
ILRRAISGIVSKLQPRVVGTLSRYSQLALGTAVLEGRSLGLTGEELGTIG
TGWEVVNFGAAFRPAASSVRIVDGNPVPEISAETYIPEPCFLRDNICLHE
LFLRTSLLTIVNAGKSSTAPTGEVEFCDIPLASGLIASAPSSLGWANLSV
ESEQLVPLGMYPAASAAIPASCPRDFGFEA*
back to top

mRNA from alignment at tig00000862_pilon:17466..19132-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10055.t1 ID=Ggra10055.t1|Name=Ggra10055.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1667bp|location=Sequence derived from alignment at tig00000862_pilon:17466..19132- (Gracilaria gracilis GNS1m male)
ATGAGGTGCCATATCTTCGTAGCTCTGATATGCTTCGTCTCATGCTGGCC
CCCTACAAGAGCGACTCAATTCAAGCGCCCGCTCTGCAATACCTTCGACC
CACAATGTGGTATGACTCCGGAACGAGCATTTCAGACACTACTCACTCCA
AACGACCAGCTGCTTCCGAAATTACTCGAATTCAAACGCCGCGCTCGTTT
TCGAATACAAGTTGGGCCGCTGATCTACAATGATGGCAATGACGGGATCA
TAAACATAGACGAAGCGCTGTCTCCCACTTTTCCGGCAGTCAATACTTCT
ATTTGCGGGACTAACAGCAACCCAACGATCAGAGAGGCTGTTATTTGCAC
AGTGACAAACGATGTTGTGCAGCCCCTTCGAGGAAACGTTAACGCTTCAC
GGATTGGATATTCAACACAAGGACGTCCTTTACTTGCAGTTCGCTTTGGC
AATCAGCACGGGATACCCGTCTTTATCGTTACCCAGCAACATGGTAACGA
GCCCGCTTCTACAGAGGCTATCTTCAAGTTTCTAGGAGTTCTTCAGGCGA
AACCCCGTCTTCGAATGAAACTGCTGCGAGTTATGAACATACTCATCTTG
ATTCGAGCCAACCGAGATGGTGGAGAGCCTACAGGGACTTTCAACATTCC
TGTTGCCCCGTTTAGTGGGACTGAAGCATTCTTTCGCCATAACGTTGACC
CTACTGCTGGGGGTGGCTTTGCGGTAGATTCTGAACCTGGATTCTTTGGG
GTTGTTGGTCGTGGTTATGATATCAATCGATATCATTATAACAAACTCGA
TGGACCAATCAGACCTGTTGAAAACACAGGCTATGGTCGCCGCACAGCTG
GCTTTCCGCCCTCGTGTTACCATCGACATGCATGGGGACTTTCAGAAGTC
CGTCTGTGAGGTAGACAAGGCTTCCATTGTGCCAAAGTCGGTTCTAGGTG
TTCTTCCATCCGGTAACTGCAAAATCCACTCGAATTTCGTGCCTAGTCTT
GTTACTCAACGGAATGAATCGATTATTGGGGGTTTCTTTGCAGCCGATCG
AGCTATTTCTACTGGTGCATCAGACGGAAGCGAAGCATTGATTTTTAGAG
AGACCACTCACCATCGCTCAGATGATATTGAGAAGAGCTATATCAGGGAT
CGTTAGCAAGCTGCAACCCAGAGTTGTCGGGACTTTGTCTCGATACAGTC
AGCTTGCCCTTGGCACTGCTGTATTGGAAGGTCGTTCACTGGGACTCACG
GGTGAAGAACTCGGAACTATTGGTACAGGGTGGGAAGTAGTGAATTTTGG
GGCTGCATTTCGTCCGGCTGCTTCATCTGTGAGGATTGTCGATGGCAACC
CCGTGCCGGAAATTTCGGCCGAGACCTACATACCGGAACCGTGCTTTCTA
CGCGATAACATTTGTCTTCACGAGCTCTTTCTGCGTACATCACTGTTAAC
GATTGTGAACGCCGGGAAGAGTTCTACTGCTCCGACAGGGGAAGTAGAAT
TCTGTGACATTCCGCTTGCAAGCGGACTCATAGCGTCTGCGCCATCCTCT
TTGGGATGGGCTAATCTAAGCGTGGAAAGTGAGCAGCTAGTGCCCTTGGG
AATGTATCCAGCTGCAAGTGCTGCCATTCCTGCATCTTGTCCAAGAGATT
TCGGGTTTGAAGCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000862_pilon:17466..19132-

>Ggra10055.t1 ID=Ggra10055.t1|Name=Ggra10055.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1443bp|location=Sequence derived from alignment at tig00000862_pilon:17466..19132- (Gracilaria gracilis GNS1m male)
ATGAGGTGCCATATCTTCGTAGCTCTGATATGCTTCGTCTCATGCTGGCC
CCCTACAAGAGCGACTCAATTCAAGCGCCCGCTCTGCAATACCTTCGACC
CACAATGTGGTATGACTCCGGAACGAGCATTTCAGACACTACTCACTCCA
AACGACCAGCTGCTTCCGAAATTACTCGAATTCAAACGCCGCGCTCGTTT
TCGAATACAAGTTGGGCCGCTGATCTACAATGATGGCAATGACGGGATCA
TAAACATAGACGAAGCGCTGTCTCCCACTTTTCCGGCAGTCAATACTTCT
ATTTGCGGGACTAACAGCAACCCAACGATCAGAGAGGCTGTTATTTGCAC
AGTGACAAACGATGTTGTGCAGCCCCTTCGAGGAAACGTTAACGCTTCAC
GGATTGGATATTCAACACAAGGACGTCCTTTACTTGCAGTTCGCTTTGGC
AATCAGCACGGGATACCCGTCTTTATCGTTACCCAGCAACATGGTAACGA
GCCCGCTTCTACAGAGGCTATCTTCAAGTTTCTAGGAGTTCTTCAGGCGA
AACCCCGTCTTCGAATGAAACTGCTGCGAGTTATGAACATACTCATCTTG
ATTCGAGCCAACCGAGATGGTGGAGAGCCTACAGGGACTTTCAACATTCC
TGTTGCCCCGTTTAGTGGGACTGAAGCATTCTTTCGCCATAACGTTGACC
CTACTGCTGGGGGTGGCTTTGCGGTAGATTCTGAACCTGGATTCTTTGGG
GTTGTTGGTCGTGGTTATGATATCAATCGATATCATTATAACAAACTCGA
TGGACCAATCAGACCTGTTGAAAACACAGGCTATGGTCGCCGCACAGCTG
GCTTTCCGCCCTCGTGTTACCATCGACATGCATGGGGACTTTCAGAAATG
ATATTGAGAAGAGCTATATCAGGGATCGTTAGCAAGCTGCAACCCAGAGT
TGTCGGGACTTTGTCTCGATACAGTCAGCTTGCCCTTGGCACTGCTGTAT
TGGAAGGTCGTTCACTGGGACTCACGGGTGAAGAACTCGGAACTATTGGT
ACAGGGTGGGAAGTAGTGAATTTTGGGGCTGCATTTCGTCCGGCTGCTTC
ATCTGTGAGGATTGTCGATGGCAACCCCGTGCCGGAAATTTCGGCCGAGA
CCTACATACCGGAACCGTGCTTTCTACGCGATAACATTTGTCTTCACGAG
CTCTTTCTGCGTACATCACTGTTAACGATTGTGAACGCCGGGAAGAGTTC
TACTGCTCCGACAGGGGAAGTAGAATTCTGTGACATTCCGCTTGCAAGCG
GACTCATAGCGTCTGCGCCATCCTCTTTGGGATGGGCTAATCTAAGCGTG
GAAAGTGAGCAGCTAGTGCCCTTGGGAATGTATCCAGCTGCAAGTGCTGC
CATTCCTGCATCTTGTCCAAGAGATTTCGGGTTTGAAGCGTAG
back to top