Ggra10039.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10039.t1
Unique NameGgra10039.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:125651..126469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10039Ggra10039Gracilaria gracilis GNS1m malegenetig00000222_pilon 125651..126469 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10039.t1.stop1Ggra10039.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 125651..125653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10039.t1.CDS1Ggra10039.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 125651..126469 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10039.t1.exon1Ggra10039.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 125651..126469 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10039.t1.start1Ggra10039.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 126467..126469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10039.t1Ggra10039.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 125651..126469 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10039.t1 ID=Ggra10039.t1|Name=Ggra10039.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp
MATPSASRNVTKDPRQVERFVPTPETYHNTPNADNDIQTLETPELPTEFE
LNTIIATQLHFENDSYPANANAIENPHSTADQTLQDYVYMIIETVAQSEC
SGEDPTFGQSQPSRTTMTTSSSEAVAPRRREEGAHVLEVELRALREDMRT
TRATCSREHSASNRMEAQIFAVEDVWSSVFNYEMDCTLNDSLDSNEATRG
HDNDINRDRNRGNLKTKLMGWSYSSPFESFEIGIDEINIELGKRFLNDIN
SVLRNVTREVQEMSASAKHLTL*
back to top

spliced messenger RNA

>Ggra10039.t1 ID=Ggra10039.t1|Name=Ggra10039.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000222_pilon:125651..126469- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACACCGTCTGCGAGCAGGAACGTGACAAAAGATCCTCGTCAAGT
AGAGAGGTTTGTTCCTACCCCAGAGACATATCATAATACACCAAACGCTG
ACAATGACATTCAAACTCTCGAGACTCCAGAACTGCCAACTGAGTTTGAA
TTGAATACCATCATAGCAACTCAACTGCATTTTGAGAACGATTCATACCC
TGCAAACGCAAACGCAATTGAAAACCCACATAGCACAGCCGATCAAACCC
TCCAGGATTATGTATATATGATCATCGAAACAGTGGCACAGTCAGAATGC
AGTGGAGAGGACCCAACCTTTGGACAATCACAACCGAGCAGGACAACAAT
GACTACCAGCTCTTCCGAAGCAGTTGCTCCACGTAGAAGGGAAGAAGGTG
CTCATGTACTGGAGGTAGAGCTCCGCGCTCTAAGAGAGGATATGCGCACA
ACTAGAGCTACGTGCAGTCGGGAGCACTCAGCCTCCAACCGTATGGAAGC
ACAAATATTTGCGGTTGAAGACGTTTGGTCGTCCGTTTTCAATTACGAGA
TGGACTGTACTTTGAACGACAGTTTGGACTCTAATGAGGCCACCAGGGGT
CATGATAACGATATCAATCGTGACAGAAACAGAGGAAATTTAAAGACAAA
ATTAATGGGCTGGTCATATTCTTCTCCCTTCGAGTCGTTCGAAATTGGAA
TTGATGAGATTAACATTGAGCTTGGAAAGCGTTTTCTTAATGACATAAAC
TCTGTTCTTCGGAACGTAACGAGAGAAGTCCAGGAAATGTCTGCCTCAGC
TAAACATCTAACATTATAG
back to top

protein sequence of Ggra10039.t1

>Ggra10039.t1 ID=Ggra10039.t1|Name=Ggra10039.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=273bp
MATPSASRNVTKDPRQVERFVPTPETYHNTPNADNDIQTLETPELPTEFE
LNTIIATQLHFENDSYPANANAIENPHSTADQTLQDYVYMIIETVAQSEC
SGEDPTFGQSQPSRTTMTTSSSEAVAPRRREEGAHVLEVELRALREDMRT
TRATCSREHSASNRMEAQIFAVEDVWSSVFNYEMDCTLNDSLDSNEATRG
HDNDINRDRNRGNLKTKLMGWSYSSPFESFEIGIDEINIELGKRFLNDIN
SVLRNVTREVQEMSASAKHLTL*
back to top

mRNA from alignment at tig00000222_pilon:125651..126469-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10039.t1 ID=Ggra10039.t1|Name=Ggra10039.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000222_pilon:125651..126469- (Gracilaria gracilis GNS1m male)
ATGGCAACACCGTCTGCGAGCAGGAACGTGACAAAAGATCCTCGTCAAGT
AGAGAGGTTTGTTCCTACCCCAGAGACATATCATAATACACCAAACGCTG
ACAATGACATTCAAACTCTCGAGACTCCAGAACTGCCAACTGAGTTTGAA
TTGAATACCATCATAGCAACTCAACTGCATTTTGAGAACGATTCATACCC
TGCAAACGCAAACGCAATTGAAAACCCACATAGCACAGCCGATCAAACCC
TCCAGGATTATGTATATATGATCATCGAAACAGTGGCACAGTCAGAATGC
AGTGGAGAGGACCCAACCTTTGGACAATCACAACCGAGCAGGACAACAAT
GACTACCAGCTCTTCCGAAGCAGTTGCTCCACGTAGAAGGGAAGAAGGTG
CTCATGTACTGGAGGTAGAGCTCCGCGCTCTAAGAGAGGATATGCGCACA
ACTAGAGCTACGTGCAGTCGGGAGCACTCAGCCTCCAACCGTATGGAAGC
ACAAATATTTGCGGTTGAAGACGTTTGGTCGTCCGTTTTCAATTACGAGA
TGGACTGTACTTTGAACGACAGTTTGGACTCTAATGAGGCCACCAGGGGT
CATGATAACGATATCAATCGTGACAGAAACAGAGGAAATTTAAAGACAAA
ATTAATGGGCTGGTCATATTCTTCTCCCTTCGAGTCGTTCGAAATTGGAA
TTGATGAGATTAACATTGAGCTTGGAAAGCGTTTTCTTAATGACATAAAC
TCTGTTCTTCGGAACGTAACGAGAGAAGTCCAGGAAATGTCTGCCTCAGC
TAAACATCTAACATTATAG
back to top

Coding sequence (CDS) from alignment at tig00000222_pilon:125651..126469-

>Ggra10039.t1 ID=Ggra10039.t1|Name=Ggra10039.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00000222_pilon:125651..126469- (Gracilaria gracilis GNS1m male)
ATGGCAACACCGTCTGCGAGCAGGAACGTGACAAAAGATCCTCGTCAAGT
AGAGAGGTTTGTTCCTACCCCAGAGACATATCATAATACACCAAACGCTG
ACAATGACATTCAAACTCTCGAGACTCCAGAACTGCCAACTGAGTTTGAA
TTGAATACCATCATAGCAACTCAACTGCATTTTGAGAACGATTCATACCC
TGCAAACGCAAACGCAATTGAAAACCCACATAGCACAGCCGATCAAACCC
TCCAGGATTATGTATATATGATCATCGAAACAGTGGCACAGTCAGAATGC
AGTGGAGAGGACCCAACCTTTGGACAATCACAACCGAGCAGGACAACAAT
GACTACCAGCTCTTCCGAAGCAGTTGCTCCACGTAGAAGGGAAGAAGGTG
CTCATGTACTGGAGGTAGAGCTCCGCGCTCTAAGAGAGGATATGCGCACA
ACTAGAGCTACGTGCAGTCGGGAGCACTCAGCCTCCAACCGTATGGAAGC
ACAAATATTTGCGGTTGAAGACGTTTGGTCGTCCGTTTTCAATTACGAGA
TGGACTGTACTTTGAACGACAGTTTGGACTCTAATGAGGCCACCAGGGGT
CATGATAACGATATCAATCGTGACAGAAACAGAGGAAATTTAAAGACAAA
ATTAATGGGCTGGTCATATTCTTCTCCCTTCGAGTCGTTCGAAATTGGAA
TTGATGAGATTAACATTGAGCTTGGAAAGCGTTTTCTTAATGACATAAAC
TCTGTTCTTCGGAACGTAACGAGAGAAGTCCAGGAAATGTCTGCCTCAGC
TAAACATCTAACATTATAG
back to top