Ggra10037.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10037.t1
Unique NameGgra10037.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:121406..122121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10037Ggra10037Gracilaria gracilis GNS1m malegenetig00000222_pilon 121406..122121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10037.t1Ggra10037.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 121406..122121 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10037.t1.stop1Ggra10037.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 121406..121408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10037.t1.CDS1Ggra10037.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 121406..121794 -
Ggra10037.t1.CDS2Ggra10037.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000222_pilon 121980..122121 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10037.t1.exon1Ggra10037.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 121406..121794 -
Ggra10037.t1.exon2Ggra10037.t1.exon2Gracilaria gracilis GNS1m maleexontig00000222_pilon 121980..122121 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10037.t1.intron1Ggra10037.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000222_pilon 121795..121979 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10037.t1.start1Ggra10037.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 122119..122121 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10037.t1 ID=Ggra10037.t1|Name=Ggra10037.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=177bp
MVELDPEAREAAVIAAQAKKKESSSRARHTTRLAAGKTKQVDYKASATSS
KERLNYSGWRSGGNSGEKKYDNHEGSDEVVATSRTNGMENDRKNPRAENR
RGRSNHSIDIDRGNSGSRDSRDNGSHDLLDDDEDLNDEEELDEDEDPENR
KNARDLNVQDLKCIGIAVTEANSLDP*
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spliced messenger RNA

>Ggra10037.t1 ID=Ggra10037.t1|Name=Ggra10037.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00000222_pilon:121406..122121- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGAGCTTGACCCTGAAGCTCGAGAGGCTGCTGTAATCGCTGCTCA
GGCTAAAAAGAAGGAATCAAGCAGTAGAGCTCGGCATACAACCCGCCTCG
CAGCCGGAAAGACCAAACAGGTCGACTACAAGGCGTCTGCCACGTCATCG
AAAGAAAGATTGAATTACTCAGGGTGGCGTTCTGGAGGGAACAGCGGTGA
AAAGAAGTATGACAATCACGAAGGTTCTGATGAAGTCGTTGCAACCTCTC
GCACTAATGGCATGGAAAACGATCGAAAGAATCCCAGGGCAGAAAATCGG
CGAGGGCGAAGCAACCACTCTATCGATATTGATAGAGGGAACAGCGGAAG
CCGCGATAGCCGAGACAACGGCAGTCATGACCTTCTTGACGACGATGAAG
ACTTAAATGACGAAGAGGAACTAGACGAGGACGAGGATCCTGAGAATCGC
AAGAACGCTCGCGATCTGAATGTACAAGACTTGAAGTGCATCGGGATTGC
TGTGACAGAGGCAAACTCTTTGGATCCGTGA
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protein sequence of Ggra10037.t1

>Ggra10037.t1 ID=Ggra10037.t1|Name=Ggra10037.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=177bp
MVELDPEAREAAVIAAQAKKKESSSRARHTTRLAAGKTKQVDYKASATSS
KERLNYSGWRSGGNSGEKKYDNHEGSDEVVATSRTNGMENDRKNPRAENR
RGRSNHSIDIDRGNSGSRDSRDNGSHDLLDDDEDLNDEEELDEDEDPENR
KNARDLNVQDLKCIGIAVTEANSLDP*
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mRNA from alignment at tig00000222_pilon:121406..122121-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10037.t1 ID=Ggra10037.t1|Name=Ggra10037.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=716bp|location=Sequence derived from alignment at tig00000222_pilon:121406..122121- (Gracilaria gracilis GNS1m male)
ATGGTCGAGCTTGACCCTGAAGCTCGAGAGGCTGCTGTAATCGCTGCTCA
GGCTAAAAAGAAGGAATCAAGCAGTAGAGCTCGGCATACAACCCGCCTCG
CAGCCGGAAAGACCAAACAGGTCGACTACAAGGCGTCTGCCAGTCCGCAA
AGTATAAGAACGTATTCCCCTGGGCAAGACAATGAAGACCTGACGGGCAT
CATCAGAGCAATGAAATTGCTGATGCTCCAAAGTCATCGAGAAGAAGAAC
AGCCTGGAACCATTCTGGTCATCAGCTGCGCACATCACGGAGATTGACGC
GACAACGGGGCTCTTAGGACCGTGAAGCGTCATCGAAAGAAAGATTGAAT
TACTCAGGGTGGCGTTCTGGAGGGAACAGCGGTGAAAAGAAGTATGACAA
TCACGAAGGTTCTGATGAAGTCGTTGCAACCTCTCGCACTAATGGCATGG
AAAACGATCGAAAGAATCCCAGGGCAGAAAATCGGCGAGGGCGAAGCAAC
CACTCTATCGATATTGATAGAGGGAACAGCGGAAGCCGCGATAGCCGAGA
CAACGGCAGTCATGACCTTCTTGACGACGATGAAGACTTAAATGACGAAG
AGGAACTAGACGAGGACGAGGATCCTGAGAATCGCAAGAACGCTCGCGAT
CTGAATGTACAAGACTTGAAGTGCATCGGGATTGCTGTGACAGAGGCAAA
CTCTTTGGATCCGTGA
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Coding sequence (CDS) from alignment at tig00000222_pilon:121406..122121-

>Ggra10037.t1 ID=Ggra10037.t1|Name=Ggra10037.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=531bp|location=Sequence derived from alignment at tig00000222_pilon:121406..122121- (Gracilaria gracilis GNS1m male)
ATGGTCGAGCTTGACCCTGAAGCTCGAGAGGCTGCTGTAATCGCTGCTCA
GGCTAAAAAGAAGGAATCAAGCAGTAGAGCTCGGCATACAACCCGCCTCG
CAGCCGGAAAGACCAAACAGGTCGACTACAAGGCGTCTGCCACGTCATCG
AAAGAAAGATTGAATTACTCAGGGTGGCGTTCTGGAGGGAACAGCGGTGA
AAAGAAGTATGACAATCACGAAGGTTCTGATGAAGTCGTTGCAACCTCTC
GCACTAATGGCATGGAAAACGATCGAAAGAATCCCAGGGCAGAAAATCGG
CGAGGGCGAAGCAACCACTCTATCGATATTGATAGAGGGAACAGCGGAAG
CCGCGATAGCCGAGACAACGGCAGTCATGACCTTCTTGACGACGATGAAG
ACTTAAATGACGAAGAGGAACTAGACGAGGACGAGGATCCTGAGAATCGC
AAGAACGCTCGCGATCTGAATGTACAAGACTTGAAGTGCATCGGGATTGC
TGTGACAGAGGCAAACTCTTTGGATCCGTGA
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