Ggra10035.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10035.t1
Unique NameGgra10035.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:111575..112201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4577.GRMZM2G168439_P01
PFAMsMIP
Max annot lvl35493|Streptophyta
KEGG koko:K09873
KEGG TC1.A.8.10
GOsGO:0000325,GO:0003674,GO:0005215,GO:0005372,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006833,GO:0008150,GO:0009705,GO:0015204,GO:0015250,GO:0015267,GO:0015318,GO:0015840,GO:0016020,GO:0016021,GO:0019755,GO:0022803,GO:0022838,GO:0022857,GO:0031090,GO:0031224,GO:0031226,GO:0034220,GO:0042044,GO:0042807,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071918,GO:0071944,GO:0098588,GO:0098805
Evalue9.69e-18
EggNOG OGsCOG0580@1|root,KOG0223@2759|Eukaryota,37HHG@33090|Viridiplantae,3GA6H@35493|Streptophyta,3KXGW@4447|Liliopsida,3I6ZM@38820|Poales
DescriptionBelongs to the MIP aquaporin (TC 1.A.8) family
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10035Ggra10035Gracilaria gracilis GNS1m malegenetig00000222_pilon 111575..112201 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10035.t1.stop1Ggra10035.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 111575..111577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10035.t1.CDS1Ggra10035.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 111575..112201 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10035.t1.exon1Ggra10035.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 111575..112201 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10035.t1.start1Ggra10035.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 112199..112201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10035.t1Ggra10035.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 111575..112201 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10035.t1 ID=Ggra10035.t1|Name=Ggra10035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=209bp
MGVWELFGLSLGSPVNPAVTLSLFLAGKLTADDAFVMAIAQFLGHIFATL
LVRRGAEMIFEGEAIARFAPPQPHEGLSYMGAVAIEMGITFSMCVLALSL
DSIFGKRAVIKKWSVMTSITIAMVAGAGEWTGACMNPAMSLALSLLENLW
KKQEIYWIGPISGALLAAGLHRWSFDEKRRIRRLARRLSSRARPNISLTA
TGDHEKDE*
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spliced messenger RNA

>Ggra10035.t1 ID=Ggra10035.t1|Name=Ggra10035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000222_pilon:111575..112201- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGTTTGGGAGTTATTCGGACTTTCACTTGGTAGCCCAGTCAACCC
AGCGGTCACCCTTTCCCTTTTTCTAGCTGGGAAACTCACAGCCGACGATG
CGTTCGTGATGGCTATTGCACAGTTTCTGGGGCATATATTTGCCACTCTG
CTTGTTCGTAGAGGAGCAGAAATGATATTTGAAGGTGAGGCAATTGCGAG
ATTTGCGCCTCCACAACCGCACGAAGGTCTTTCATACATGGGTGCTGTGG
CAATTGAAATGGGAATAACGTTCTCAATGTGTGTACTAGCTTTGTCACTG
GATTCAATCTTTGGAAAGAGAGCTGTCATTAAGAAATGGAGTGTGATGAC
TTCCATAACTATTGCCATGGTCGCCGGCGCTGGGGAGTGGACCGGTGCGT
GCATGAACCCCGCTATGTCTCTTGCCCTTTCATTACTCGAGAATCTGTGG
AAGAAGCAGGAAATATACTGGATTGGTCCCATTTCCGGAGCTCTATTGGC
TGCAGGATTGCATAGATGGTCCTTTGATGAAAAGCGTCGTATTCGACGTC
TTGCTCGGAGACTTTCAAGCAGAGCCAGACCAAATATCTCTCTTACTGCG
ACGGGAGACCACGAAAAGGATGAATAG
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protein sequence of Ggra10035.t1

>Ggra10035.t1 ID=Ggra10035.t1|Name=Ggra10035.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=209bp
MGVWELFGLSLGSPVNPAVTLSLFLAGKLTADDAFVMAIAQFLGHIFATL
LVRRGAEMIFEGEAIARFAPPQPHEGLSYMGAVAIEMGITFSMCVLALSL
DSIFGKRAVIKKWSVMTSITIAMVAGAGEWTGACMNPAMSLALSLLENLW
KKQEIYWIGPISGALLAAGLHRWSFDEKRRIRRLARRLSSRARPNISLTA
TGDHEKDE*
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mRNA from alignment at tig00000222_pilon:111575..112201-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10035.t1 ID=Ggra10035.t1|Name=Ggra10035.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp|location=Sequence derived from alignment at tig00000222_pilon:111575..112201- (Gracilaria gracilis GNS1m male)
ATGGGAGTTTGGGAGTTATTCGGACTTTCACTTGGTAGCCCAGTCAACCC
AGCGGTCACCCTTTCCCTTTTTCTAGCTGGGAAACTCACAGCCGACGATG
CGTTCGTGATGGCTATTGCACAGTTTCTGGGGCATATATTTGCCACTCTG
CTTGTTCGTAGAGGAGCAGAAATGATATTTGAAGGTGAGGCAATTGCGAG
ATTTGCGCCTCCACAACCGCACGAAGGTCTTTCATACATGGGTGCTGTGG
CAATTGAAATGGGAATAACGTTCTCAATGTGTGTACTAGCTTTGTCACTG
GATTCAATCTTTGGAAAGAGAGCTGTCATTAAGAAATGGAGTGTGATGAC
TTCCATAACTATTGCCATGGTCGCCGGCGCTGGGGAGTGGACCGGTGCGT
GCATGAACCCCGCTATGTCTCTTGCCCTTTCATTACTCGAGAATCTGTGG
AAGAAGCAGGAAATATACTGGATTGGTCCCATTTCCGGAGCTCTATTGGC
TGCAGGATTGCATAGATGGTCCTTTGATGAAAAGCGTCGTATTCGACGTC
TTGCTCGGAGACTTTCAAGCAGAGCCAGACCAAATATCTCTCTTACTGCG
ACGGGAGACCACGAAAAGGATGAATAG
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Coding sequence (CDS) from alignment at tig00000222_pilon:111575..112201-

>Ggra10035.t1 ID=Ggra10035.t1|Name=Ggra10035.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=627bp|location=Sequence derived from alignment at tig00000222_pilon:111575..112201- (Gracilaria gracilis GNS1m male)
ATGGGAGTTTGGGAGTTATTCGGACTTTCACTTGGTAGCCCAGTCAACCC
AGCGGTCACCCTTTCCCTTTTTCTAGCTGGGAAACTCACAGCCGACGATG
CGTTCGTGATGGCTATTGCACAGTTTCTGGGGCATATATTTGCCACTCTG
CTTGTTCGTAGAGGAGCAGAAATGATATTTGAAGGTGAGGCAATTGCGAG
ATTTGCGCCTCCACAACCGCACGAAGGTCTTTCATACATGGGTGCTGTGG
CAATTGAAATGGGAATAACGTTCTCAATGTGTGTACTAGCTTTGTCACTG
GATTCAATCTTTGGAAAGAGAGCTGTCATTAAGAAATGGAGTGTGATGAC
TTCCATAACTATTGCCATGGTCGCCGGCGCTGGGGAGTGGACCGGTGCGT
GCATGAACCCCGCTATGTCTCTTGCCCTTTCATTACTCGAGAATCTGTGG
AAGAAGCAGGAAATATACTGGATTGGTCCCATTTCCGGAGCTCTATTGGC
TGCAGGATTGCATAGATGGTCCTTTGATGAAAAGCGTCGTATTCGACGTC
TTGCTCGGAGACTTTCAAGCAGAGCCAGACCAAATATCTCTCTTACTGCG
ACGGGAGACCACGAAAAGGATGAATAG
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