Ggra10032.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10032.t1
Unique NameGgra10032.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:103394..103963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1487953.JMKF01000055_gene1638
PFAMsChuX_HutX
Max annot lvl1117|Cyanobacteria
Evalue5.38e-17
EggNOG OGsCOG3721@1|root,COG3721@2|Bacteria,1G5RK@1117|Cyanobacteria,1HB66@1150|Oscillatoriales
DescriptionPFAM ChuX-like family
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10032Ggra10032Gracilaria gracilis GNS1m malegenetig00000222_pilon 103394..103963 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10032.t1.stop1Ggra10032.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 103394..103396 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10032.t1.CDS1Ggra10032.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 103394..103963 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10032.t1.exon1Ggra10032.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 103394..103963 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10032.t1.start1Ggra10032.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 103961..103963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10032.t1Ggra10032.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 103394..103963 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10032.t1 ID=Ggra10032.t1|Name=Ggra10032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MAFITTISPLLRTDQRSQTLDVRRNNIVSAPIRSVRRIRINMAAPVRTTA
ADTPKKQFLDRLKALGNLRLIGRNDAVIMESIATFDGLFYATIRTGEYAN
LIDSSINLDMHLLLEGFSGAKFETGTSRDSTKSTTYVIRLLGKDRSSVIL
SLFLQWEKTPTDIAQERTDAWKALKTDYAGDSEQFFFEA*
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spliced messenger RNA

>Ggra10032.t1 ID=Ggra10032.t1|Name=Ggra10032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000222_pilon:103394..103963- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTTATAACTACTATATCACCACTTCTGCGTACCGATCAACGCTC
ACAAACTCTTGATGTCCGTCGCAACAACATCGTTTCCGCGCCCATTCGAA
GCGTTCGCCGGATTCGAATCAATATGGCTGCCCCCGTTCGCACAACAGCG
GCTGACACACCGAAGAAACAATTCCTTGACAGGCTAAAAGCGCTGGGAAA
CTTACGTCTAATTGGCCGCAACGATGCTGTAATAATGGAATCTATAGCTA
CATTCGACGGTCTATTTTATGCTACGATTCGCACCGGAGAATACGCTAAT
TTGATAGATAGTTCTATCAATCTTGACATGCATCTGTTGTTAGAAGGGTT
TAGCGGCGCCAAATTTGAGACAGGCACAAGTCGAGACTCCACAAAATCCA
CAACATACGTTATTCGGTTACTGGGAAAAGATCGTTCCAGCGTCATACTT
TCTCTCTTTTTGCAATGGGAAAAGACACCTACAGACATTGCACAGGAAAG
GACTGACGCTTGGAAGGCCCTCAAAACTGATTACGCTGGCGACTCGGAGC
AGTTCTTCTTCGAAGCGTAA
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protein sequence of Ggra10032.t1

>Ggra10032.t1 ID=Ggra10032.t1|Name=Ggra10032.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MAFITTISPLLRTDQRSQTLDVRRNNIVSAPIRSVRRIRINMAAPVRTTA
ADTPKKQFLDRLKALGNLRLIGRNDAVIMESIATFDGLFYATIRTGEYAN
LIDSSINLDMHLLLEGFSGAKFETGTSRDSTKSTTYVIRLLGKDRSSVIL
SLFLQWEKTPTDIAQERTDAWKALKTDYAGDSEQFFFEA*
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mRNA from alignment at tig00000222_pilon:103394..103963-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10032.t1 ID=Ggra10032.t1|Name=Ggra10032.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000222_pilon:103394..103963- (Gracilaria gracilis GNS1m male)
ATGGCATTTATAACTACTATATCACCACTTCTGCGTACCGATCAACGCTC
ACAAACTCTTGATGTCCGTCGCAACAACATCGTTTCCGCGCCCATTCGAA
GCGTTCGCCGGATTCGAATCAATATGGCTGCCCCCGTTCGCACAACAGCG
GCTGACACACCGAAGAAACAATTCCTTGACAGGCTAAAAGCGCTGGGAAA
CTTACGTCTAATTGGCCGCAACGATGCTGTAATAATGGAATCTATAGCTA
CATTCGACGGTCTATTTTATGCTACGATTCGCACCGGAGAATACGCTAAT
TTGATAGATAGTTCTATCAATCTTGACATGCATCTGTTGTTAGAAGGGTT
TAGCGGCGCCAAATTTGAGACAGGCACAAGTCGAGACTCCACAAAATCCA
CAACATACGTTATTCGGTTACTGGGAAAAGATCGTTCCAGCGTCATACTT
TCTCTCTTTTTGCAATGGGAAAAGACACCTACAGACATTGCACAGGAAAG
GACTGACGCTTGGAAGGCCCTCAAAACTGATTACGCTGGCGACTCGGAGC
AGTTCTTCTTCGAAGCGTAA
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Coding sequence (CDS) from alignment at tig00000222_pilon:103394..103963-

>Ggra10032.t1 ID=Ggra10032.t1|Name=Ggra10032.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000222_pilon:103394..103963- (Gracilaria gracilis GNS1m male)
ATGGCATTTATAACTACTATATCACCACTTCTGCGTACCGATCAACGCTC
ACAAACTCTTGATGTCCGTCGCAACAACATCGTTTCCGCGCCCATTCGAA
GCGTTCGCCGGATTCGAATCAATATGGCTGCCCCCGTTCGCACAACAGCG
GCTGACACACCGAAGAAACAATTCCTTGACAGGCTAAAAGCGCTGGGAAA
CTTACGTCTAATTGGCCGCAACGATGCTGTAATAATGGAATCTATAGCTA
CATTCGACGGTCTATTTTATGCTACGATTCGCACCGGAGAATACGCTAAT
TTGATAGATAGTTCTATCAATCTTGACATGCATCTGTTGTTAGAAGGGTT
TAGCGGCGCCAAATTTGAGACAGGCACAAGTCGAGACTCCACAAAATCCA
CAACATACGTTATTCGGTTACTGGGAAAAGATCGTTCCAGCGTCATACTT
TCTCTCTTTTTGCAATGGGAAAAGACACCTACAGACATTGCACAGGAAAG
GACTGACGCTTGGAAGGCCCTCAAAACTGATTACGCTGGCGACTCGGAGC
AGTTCTTCTTCGAAGCGTAA
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