Ggra10031.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10031.t1
Unique NameGgra10031.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:102196..103359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ015CT
PFAMsMetallophos
Max annot lvl2759|Eukaryota
Evalue3.25e-74
EggNOG OGsCOG0639@1|root,KOG0374@2759|Eukaryota
Descriptionphosphoprotein phosphatase activity
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10031Ggra10031Gracilaria gracilis GNS1m malegenetig00000222_pilon 102196..103359 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10031.t1.start1Ggra10031.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 102196..102198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10031.t1.CDS1Ggra10031.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 102196..103359 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10031.t1.exon1Ggra10031.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 102196..103359 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10031.t1.stop1Ggra10031.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 103357..103359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10031.t1Ggra10031.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 102196..103359 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10031.t1 ID=Ggra10031.t1|Name=Ggra10031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp
MQASKTSTEGVKPFLPPNPLMRMCRAWVQSVLSPQRLCQAASCSDRDVAL
ASLLTRILPSAEARALPPNETLPSLPPVAARFPGAKRIVAVGDVHGDVKA
FRTALRSANILDKNDNWIGGETVLVQVGDVLDRGNHERAVYRILFKLQDS
APQSGGAVHILLGNHEVMNARMDFRYVSRAGFDDFRGARGGVKFPPYLTQ
FIRSLEPFKRPRAAALAPGGSLAVELAHRARVAVIVGDNVFVHAGLKKEH
LMDNITSRKGSDNAINRLNERASTYLMGMGSLPQALRGSGSPIWMRDYSR
PPRPDPKSEMCMMLEDTLKFLRAKRMIVGHTPQLQGINSACDGRVWRIDT
GMSAIYGGVPEAFEINGNGQVQVYTPQGVVDGSERLR*
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spliced messenger RNA

>Ggra10031.t1 ID=Ggra10031.t1|Name=Ggra10031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000222_pilon:102196..103359+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCATCAAAGACGTCAACCGAAGGGGTTAAACCTTTCCTTCCTCC
CAACCCATTAATGCGCATGTGTCGCGCCTGGGTGCAGTCAGTTTTGTCGC
CACAGCGATTGTGTCAGGCGGCTAGTTGCTCAGACCGCGATGTAGCACTT
GCGAGTTTGCTCACACGCATACTACCTTCAGCTGAAGCCCGAGCTCTCCC
GCCAAACGAGACGCTCCCTTCGCTACCGCCGGTGGCAGCTCGGTTTCCGG
GCGCCAAGCGTATTGTAGCCGTCGGCGATGTTCATGGGGACGTCAAGGCC
TTTCGCACCGCCTTGCGTTCCGCCAATATACTCGACAAGAATGACAACTG
GATTGGAGGCGAAACCGTGCTGGTGCAGGTCGGCGATGTCTTAGATCGTG
GAAATCATGAACGTGCGGTGTATCGTATCTTATTCAAGTTACAAGACTCT
GCACCGCAATCAGGTGGAGCCGTTCACATACTTCTTGGTAACCATGAAGT
AATGAATGCGCGGATGGACTTTCGATACGTTTCGCGGGCTGGGTTTGACG
ATTTTCGCGGAGCTCGTGGTGGTGTTAAGTTTCCGCCGTATCTAACGCAG
TTCATTCGCTCATTGGAGCCTTTCAAAAGGCCCCGCGCGGCAGCACTCGC
CCCGGGAGGATCTTTAGCTGTTGAACTGGCACATCGCGCCCGAGTAGCGG
TTATAGTCGGTGATAACGTGTTTGTTCATGCAGGGCTTAAAAAGGAGCAT
CTCATGGATAACATAACGTCTCGCAAAGGATCGGATAACGCCATCAACAG
ACTGAACGAGCGCGCGAGCACATATTTGATGGGCATGGGCTCCCTTCCAC
AGGCTCTACGCGGAAGTGGCAGCCCAATATGGATGCGGGATTACTCACGT
CCTCCAAGACCAGACCCCAAAAGCGAGATGTGCATGATGCTGGAGGATAC
TCTTAAGTTTTTGCGTGCAAAGCGCATGATTGTTGGACATACACCACAGT
TGCAGGGGATTAACTCGGCTTGTGATGGAAGAGTGTGGAGAATTGACACT
GGTATGAGTGCTATCTACGGTGGTGTTCCGGAAGCCTTTGAGATCAATGG
CAATGGGCAAGTTCAAGTATATACCCCCCAAGGGGTGGTGGATGGTTCTG
AGCGTCTTAGGTGA
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protein sequence of Ggra10031.t1

>Ggra10031.t1 ID=Ggra10031.t1|Name=Ggra10031.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MQASKTSTEGVKPFLPPNPLMRMCRAWVQSVLSPQRLCQAASCSDRDVAL
ASLLTRILPSAEARALPPNETLPSLPPVAARFPGAKRIVAVGDVHGDVKA
FRTALRSANILDKNDNWIGGETVLVQVGDVLDRGNHERAVYRILFKLQDS
APQSGGAVHILLGNHEVMNARMDFRYVSRAGFDDFRGARGGVKFPPYLTQ
FIRSLEPFKRPRAAALAPGGSLAVELAHRARVAVIVGDNVFVHAGLKKEH
LMDNITSRKGSDNAINRLNERASTYLMGMGSLPQALRGSGSPIWMRDYSR
PPRPDPKSEMCMMLEDTLKFLRAKRMIVGHTPQLQGINSACDGRVWRIDT
GMSAIYGGVPEAFEINGNGQVQVYTPQGVVDGSERLR*
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mRNA from alignment at tig00000222_pilon:102196..103359+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10031.t1 ID=Ggra10031.t1|Name=Ggra10031.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000222_pilon:102196..103359+ (Gracilaria gracilis GNS1m male)
ATGCAAGCATCAAAGACGTCAACCGAAGGGGTTAAACCTTTCCTTCCTCC
CAACCCATTAATGCGCATGTGTCGCGCCTGGGTGCAGTCAGTTTTGTCGC
CACAGCGATTGTGTCAGGCGGCTAGTTGCTCAGACCGCGATGTAGCACTT
GCGAGTTTGCTCACACGCATACTACCTTCAGCTGAAGCCCGAGCTCTCCC
GCCAAACGAGACGCTCCCTTCGCTACCGCCGGTGGCAGCTCGGTTTCCGG
GCGCCAAGCGTATTGTAGCCGTCGGCGATGTTCATGGGGACGTCAAGGCC
TTTCGCACCGCCTTGCGTTCCGCCAATATACTCGACAAGAATGACAACTG
GATTGGAGGCGAAACCGTGCTGGTGCAGGTCGGCGATGTCTTAGATCGTG
GAAATCATGAACGTGCGGTGTATCGTATCTTATTCAAGTTACAAGACTCT
GCACCGCAATCAGGTGGAGCCGTTCACATACTTCTTGGTAACCATGAAGT
AATGAATGCGCGGATGGACTTTCGATACGTTTCGCGGGCTGGGTTTGACG
ATTTTCGCGGAGCTCGTGGTGGTGTTAAGTTTCCGCCGTATCTAACGCAG
TTCATTCGCTCATTGGAGCCTTTCAAAAGGCCCCGCGCGGCAGCACTCGC
CCCGGGAGGATCTTTAGCTGTTGAACTGGCACATCGCGCCCGAGTAGCGG
TTATAGTCGGTGATAACGTGTTTGTTCATGCAGGGCTTAAAAAGGAGCAT
CTCATGGATAACATAACGTCTCGCAAAGGATCGGATAACGCCATCAACAG
ACTGAACGAGCGCGCGAGCACATATTTGATGGGCATGGGCTCCCTTCCAC
AGGCTCTACGCGGAAGTGGCAGCCCAATATGGATGCGGGATTACTCACGT
CCTCCAAGACCAGACCCCAAAAGCGAGATGTGCATGATGCTGGAGGATAC
TCTTAAGTTTTTGCGTGCAAAGCGCATGATTGTTGGACATACACCACAGT
TGCAGGGGATTAACTCGGCTTGTGATGGAAGAGTGTGGAGAATTGACACT
GGTATGAGTGCTATCTACGGTGGTGTTCCGGAAGCCTTTGAGATCAATGG
CAATGGGCAAGTTCAAGTATATACCCCCCAAGGGGTGGTGGATGGTTCTG
AGCGTCTTAGGTGA
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Coding sequence (CDS) from alignment at tig00000222_pilon:102196..103359+

>Ggra10031.t1 ID=Ggra10031.t1|Name=Ggra10031.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000222_pilon:102196..103359+ (Gracilaria gracilis GNS1m male)
ATGCAAGCATCAAAGACGTCAACCGAAGGGGTTAAACCTTTCCTTCCTCC
CAACCCATTAATGCGCATGTGTCGCGCCTGGGTGCAGTCAGTTTTGTCGC
CACAGCGATTGTGTCAGGCGGCTAGTTGCTCAGACCGCGATGTAGCACTT
GCGAGTTTGCTCACACGCATACTACCTTCAGCTGAAGCCCGAGCTCTCCC
GCCAAACGAGACGCTCCCTTCGCTACCGCCGGTGGCAGCTCGGTTTCCGG
GCGCCAAGCGTATTGTAGCCGTCGGCGATGTTCATGGGGACGTCAAGGCC
TTTCGCACCGCCTTGCGTTCCGCCAATATACTCGACAAGAATGACAACTG
GATTGGAGGCGAAACCGTGCTGGTGCAGGTCGGCGATGTCTTAGATCGTG
GAAATCATGAACGTGCGGTGTATCGTATCTTATTCAAGTTACAAGACTCT
GCACCGCAATCAGGTGGAGCCGTTCACATACTTCTTGGTAACCATGAAGT
AATGAATGCGCGGATGGACTTTCGATACGTTTCGCGGGCTGGGTTTGACG
ATTTTCGCGGAGCTCGTGGTGGTGTTAAGTTTCCGCCGTATCTAACGCAG
TTCATTCGCTCATTGGAGCCTTTCAAAAGGCCCCGCGCGGCAGCACTCGC
CCCGGGAGGATCTTTAGCTGTTGAACTGGCACATCGCGCCCGAGTAGCGG
TTATAGTCGGTGATAACGTGTTTGTTCATGCAGGGCTTAAAAAGGAGCAT
CTCATGGATAACATAACGTCTCGCAAAGGATCGGATAACGCCATCAACAG
ACTGAACGAGCGCGCGAGCACATATTTGATGGGCATGGGCTCCCTTCCAC
AGGCTCTACGCGGAAGTGGCAGCCCAATATGGATGCGGGATTACTCACGT
CCTCCAAGACCAGACCCCAAAAGCGAGATGTGCATGATGCTGGAGGATAC
TCTTAAGTTTTTGCGTGCAAAGCGCATGATTGTTGGACATACACCACAGT
TGCAGGGGATTAACTCGGCTTGTGATGGAAGAGTGTGGAGAATTGACACT
GGTATGAGTGCTATCTACGGTGGTGTTCCGGAAGCCTTTGAGATCAATGG
CAATGGGCAAGTTCAAGTATATACCCCCCAAGGGGTGGTGGATGGTTCTG
AGCGTCTTAGGTGA
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