Ggra10030.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10030.t1
Unique NameGgra10030.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:100422..101390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10030Ggra10030Gracilaria gracilis GNS1m malegenetig00000222_pilon 100422..101390 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10030.t1.start1Ggra10030.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 100422..100424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10030.t1.CDS1Ggra10030.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 100422..101390 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10030.t1.exon1Ggra10030.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 100422..101390 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10030.t1.stop1Ggra10030.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 101388..101390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10030.t1Ggra10030.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 100422..101390 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10030.t1 ID=Ggra10030.t1|Name=Ggra10030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=323bp
MSWSVFCIMLTFSSVVFVNAQSTEAGACIMTDTSCPCAEILVSGDCITHN
GNNKCSKGACKPSYRCDCLGYEMCKRTQCAMYSSEGNVIPGAKDSFPCHP
GPSTAVCTSFDYVMDTVAAVENMYTAIIGANDESSAMMMEAYEIVAQIEA
DIIAVNDALKNIAVLRSRMTAPEKHDIETEAEAVISIVADSGELALNASH
EAEKVYRASRQLAELRQEIRKASNSEKTAEQALLTAQQNANDSGESCKQC
ASLKHELEKNQKTHKEAILKAADISKTSREHNWNAGKLRDQVLENRSRAV
EGKRKLLSLIDGINKRVIDVDI*
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spliced messenger RNA

>Ggra10030.t1 ID=Ggra10030.t1|Name=Ggra10030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000222_pilon:100422..101390+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTGGTCCGTGTTTTGCATTATGCTCACATTCAGCTCCGTCGTTTT
CGTCAATGCTCAATCAACCGAGGCTGGAGCATGCATAATGACAGATACCT
CTTGTCCATGCGCTGAGATTCTAGTTTCTGGCGATTGTATCACCCACAAC
GGCAACAACAAATGTTCTAAAGGTGCATGTAAGCCGTCGTATCGATGTGA
CTGTCTTGGGTATGAAATGTGCAAGCGCACTCAGTGTGCAATGTACTCCA
GCGAAGGCAACGTGATTCCAGGCGCTAAAGATTCGTTCCCATGTCATCCC
GGTCCGTCTACAGCAGTGTGCACATCCTTTGACTACGTCATGGACACAGT
CGCAGCTGTGGAGAACATGTATACGGCTATTATTGGTGCAAATGATGAAT
CATCTGCGATGATGATGGAAGCATATGAAATCGTTGCGCAGATTGAAGCT
GATATTATTGCGGTGAATGATGCTCTGAAGAACATCGCAGTCTTGAGAAG
CCGAATGACAGCACCAGAGAAACATGACATTGAAACGGAAGCGGAAGCCG
TGATATCGATCGTTGCCGATTCCGGTGAGCTCGCTCTGAACGCAAGTCAT
GAAGCTGAAAAGGTCTACCGAGCAAGCCGTCAGCTTGCTGAACTACGACA
AGAGATAAGAAAGGCTTCAAACAGTGAGAAGACAGCCGAACAGGCACTTC
TTACTGCACAGCAAAACGCAAACGATAGCGGTGAAAGTTGCAAGCAGTGT
GCTTCGCTGAAGCATGAACTTGAGAAAAACCAAAAGACCCATAAAGAAGC
GATCCTAAAGGCTGCAGATATCTCGAAAACGAGCCGTGAACATAACTGGA
ATGCAGGCAAACTTCGTGACCAAGTTCTGGAAAACCGTTCTAGGGCCGTG
GAAGGCAAACGAAAGCTACTTTCACTGATTGATGGAATCAATAAGCGCGT
CATTGATGTTGATATTTAA
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protein sequence of Ggra10030.t1

>Ggra10030.t1 ID=Ggra10030.t1|Name=Ggra10030.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=323bp
MSWSVFCIMLTFSSVVFVNAQSTEAGACIMTDTSCPCAEILVSGDCITHN
GNNKCSKGACKPSYRCDCLGYEMCKRTQCAMYSSEGNVIPGAKDSFPCHP
GPSTAVCTSFDYVMDTVAAVENMYTAIIGANDESSAMMMEAYEIVAQIEA
DIIAVNDALKNIAVLRSRMTAPEKHDIETEAEAVISIVADSGELALNASH
EAEKVYRASRQLAELRQEIRKASNSEKTAEQALLTAQQNANDSGESCKQC
ASLKHELEKNQKTHKEAILKAADISKTSREHNWNAGKLRDQVLENRSRAV
EGKRKLLSLIDGINKRVIDVDI*
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mRNA from alignment at tig00000222_pilon:100422..101390+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10030.t1 ID=Ggra10030.t1|Name=Ggra10030.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000222_pilon:100422..101390+ (Gracilaria gracilis GNS1m male)
ATGAGCTGGTCCGTGTTTTGCATTATGCTCACATTCAGCTCCGTCGTTTT
CGTCAATGCTCAATCAACCGAGGCTGGAGCATGCATAATGACAGATACCT
CTTGTCCATGCGCTGAGATTCTAGTTTCTGGCGATTGTATCACCCACAAC
GGCAACAACAAATGTTCTAAAGGTGCATGTAAGCCGTCGTATCGATGTGA
CTGTCTTGGGTATGAAATGTGCAAGCGCACTCAGTGTGCAATGTACTCCA
GCGAAGGCAACGTGATTCCAGGCGCTAAAGATTCGTTCCCATGTCATCCC
GGTCCGTCTACAGCAGTGTGCACATCCTTTGACTACGTCATGGACACAGT
CGCAGCTGTGGAGAACATGTATACGGCTATTATTGGTGCAAATGATGAAT
CATCTGCGATGATGATGGAAGCATATGAAATCGTTGCGCAGATTGAAGCT
GATATTATTGCGGTGAATGATGCTCTGAAGAACATCGCAGTCTTGAGAAG
CCGAATGACAGCACCAGAGAAACATGACATTGAAACGGAAGCGGAAGCCG
TGATATCGATCGTTGCCGATTCCGGTGAGCTCGCTCTGAACGCAAGTCAT
GAAGCTGAAAAGGTCTACCGAGCAAGCCGTCAGCTTGCTGAACTACGACA
AGAGATAAGAAAGGCTTCAAACAGTGAGAAGACAGCCGAACAGGCACTTC
TTACTGCACAGCAAAACGCAAACGATAGCGGTGAAAGTTGCAAGCAGTGT
GCTTCGCTGAAGCATGAACTTGAGAAAAACCAAAAGACCCATAAAGAAGC
GATCCTAAAGGCTGCAGATATCTCGAAAACGAGCCGTGAACATAACTGGA
ATGCAGGCAAACTTCGTGACCAAGTTCTGGAAAACCGTTCTAGGGCCGTG
GAAGGCAAACGAAAGCTACTTTCACTGATTGATGGAATCAATAAGCGCGT
CATTGATGTTGATATTTAA
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Coding sequence (CDS) from alignment at tig00000222_pilon:100422..101390+

>Ggra10030.t1 ID=Ggra10030.t1|Name=Ggra10030.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=969bp|location=Sequence derived from alignment at tig00000222_pilon:100422..101390+ (Gracilaria gracilis GNS1m male)
ATGAGCTGGTCCGTGTTTTGCATTATGCTCACATTCAGCTCCGTCGTTTT
CGTCAATGCTCAATCAACCGAGGCTGGAGCATGCATAATGACAGATACCT
CTTGTCCATGCGCTGAGATTCTAGTTTCTGGCGATTGTATCACCCACAAC
GGCAACAACAAATGTTCTAAAGGTGCATGTAAGCCGTCGTATCGATGTGA
CTGTCTTGGGTATGAAATGTGCAAGCGCACTCAGTGTGCAATGTACTCCA
GCGAAGGCAACGTGATTCCAGGCGCTAAAGATTCGTTCCCATGTCATCCC
GGTCCGTCTACAGCAGTGTGCACATCCTTTGACTACGTCATGGACACAGT
CGCAGCTGTGGAGAACATGTATACGGCTATTATTGGTGCAAATGATGAAT
CATCTGCGATGATGATGGAAGCATATGAAATCGTTGCGCAGATTGAAGCT
GATATTATTGCGGTGAATGATGCTCTGAAGAACATCGCAGTCTTGAGAAG
CCGAATGACAGCACCAGAGAAACATGACATTGAAACGGAAGCGGAAGCCG
TGATATCGATCGTTGCCGATTCCGGTGAGCTCGCTCTGAACGCAAGTCAT
GAAGCTGAAAAGGTCTACCGAGCAAGCCGTCAGCTTGCTGAACTACGACA
AGAGATAAGAAAGGCTTCAAACAGTGAGAAGACAGCCGAACAGGCACTTC
TTACTGCACAGCAAAACGCAAACGATAGCGGTGAAAGTTGCAAGCAGTGT
GCTTCGCTGAAGCATGAACTTGAGAAAAACCAAAAGACCCATAAAGAAGC
GATCCTAAAGGCTGCAGATATCTCGAAAACGAGCCGTGAACATAACTGGA
ATGCAGGCAAACTTCGTGACCAAGTTCTGGAAAACCGTTCTAGGGCCGTG
GAAGGCAAACGAAAGCTACTTTCACTGATTGATGGAATCAATAAGCGCGT
CATTGATGTTGATATTTAA
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