Ggra10029.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10029.t1
Unique NameGgra10029.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:98446..99384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1231241.Mc24_04950
PFAMsHydrolase_4
Max annot lvl200918|Thermotogae
Evalue1.99e-31
EggNOG OGsCOG2267@1|root,COG2267@2|Bacteria,2GD0W@200918|Thermotogae
DescriptionPFAM alpha beta hydrolase fold
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10029Ggra10029Gracilaria gracilis GNS1m malegenetig00000222_pilon 98446..99384 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10029.t1.stop1Ggra10029.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 98446..98448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10029.t1.CDS1Ggra10029.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 98446..99384 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10029.t1.exon1Ggra10029.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 98446..99384 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10029.t1.start1Ggra10029.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 99382..99384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10029.t1Ggra10029.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 98446..99384 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10029.t1 ID=Ggra10029.t1|Name=Ggra10029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=313bp
MPLHEETEVLQYRDPNQPNLHIVYWTKTSSPQIENPKLFVWNHGVCEHSA
RYRNFAEKLLNRVSSLDAIISYDMRNHGKSDGAKGAARHLTDYISDLYNL
ILPHAALRYGPNSSVVVGGHSMGGVIVASAMTNKDNLLSEAIGKFTAVIL
SAPAIDCVVSGVINKVLQPVAPYLCRIPGSRGLTKGVGIRPADLCKNQEA
VDAYINDPLVHDKVSVGVGTDLLSYGNTVLEALKDEPECVLNTVPVLVVH
GGDDKVVRMEGSERLVQAVNEKGAAKLVKIDGAFHETFNEKPEVGSDKFF
DSVAEFLTSVFI*
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spliced messenger RNA

>Ggra10029.t1 ID=Ggra10029.t1|Name=Ggra10029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000222_pilon:98446..99384- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCTGCACGAAGAGACAGAGGTTCTTCAATATCGCGATCCCAATCA
ACCCAACCTTCACATTGTATACTGGACTAAAACGTCATCACCGCAGATCG
AAAACCCCAAACTCTTCGTTTGGAATCATGGCGTCTGCGAACACTCCGCT
CGTTACAGGAATTTTGCGGAAAAGCTATTGAACCGTGTATCATCTTTAGA
CGCAATAATATCATATGATATGAGGAATCATGGAAAGTCCGACGGTGCAA
AAGGTGCGGCTAGACATCTCACGGATTATATCAGCGATTTATACAATCTG
ATATTACCACATGCTGCCCTTCGATATGGTCCCAATTCAAGTGTTGTTGT
GGGTGGTCATTCCATGGGCGGCGTTATTGTAGCTTCGGCAATGACAAATA
AGGATAACTTGCTGTCTGAAGCAATTGGAAAATTCACCGCTGTTATACTC
AGCGCTCCGGCAATTGACTGCGTTGTTTCGGGTGTGATCAACAAGGTCTT
ACAACCAGTAGCTCCTTATCTGTGCCGGATTCCCGGCTCAAGAGGTCTCA
CAAAAGGGGTTGGAATTCGTCCCGCCGATCTTTGCAAGAACCAAGAAGCA
GTAGATGCATACATAAACGACCCACTTGTCCATGACAAAGTAAGCGTTGG
TGTTGGTACTGATCTTCTTAGCTATGGTAATACCGTTCTGGAAGCTTTGA
AAGACGAGCCTGAATGCGTGCTTAACACGGTGCCAGTACTCGTTGTACAT
GGCGGTGATGATAAGGTTGTTCGAATGGAGGGGAGTGAGAGACTTGTACA
GGCTGTTAACGAAAAAGGAGCTGCCAAGCTCGTTAAGATCGATGGAGCTT
TTCATGAAACCTTCAATGAGAAACCGGAGGTTGGAAGTGACAAGTTCTTT
GACAGTGTGGCTGAGTTTCTTACATCTGTTTTCATCTAG
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protein sequence of Ggra10029.t1

>Ggra10029.t1 ID=Ggra10029.t1|Name=Ggra10029.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MPLHEETEVLQYRDPNQPNLHIVYWTKTSSPQIENPKLFVWNHGVCEHSA
RYRNFAEKLLNRVSSLDAIISYDMRNHGKSDGAKGAARHLTDYISDLYNL
ILPHAALRYGPNSSVVVGGHSMGGVIVASAMTNKDNLLSEAIGKFTAVIL
SAPAIDCVVSGVINKVLQPVAPYLCRIPGSRGLTKGVGIRPADLCKNQEA
VDAYINDPLVHDKVSVGVGTDLLSYGNTVLEALKDEPECVLNTVPVLVVH
GGDDKVVRMEGSERLVQAVNEKGAAKLVKIDGAFHETFNEKPEVGSDKFF
DSVAEFLTSVFI*
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mRNA from alignment at tig00000222_pilon:98446..99384-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10029.t1 ID=Ggra10029.t1|Name=Ggra10029.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000222_pilon:98446..99384- (Gracilaria gracilis GNS1m male)
ATGCCTCTGCACGAAGAGACAGAGGTTCTTCAATATCGCGATCCCAATCA
ACCCAACCTTCACATTGTATACTGGACTAAAACGTCATCACCGCAGATCG
AAAACCCCAAACTCTTCGTTTGGAATCATGGCGTCTGCGAACACTCCGCT
CGTTACAGGAATTTTGCGGAAAAGCTATTGAACCGTGTATCATCTTTAGA
CGCAATAATATCATATGATATGAGGAATCATGGAAAGTCCGACGGTGCAA
AAGGTGCGGCTAGACATCTCACGGATTATATCAGCGATTTATACAATCTG
ATATTACCACATGCTGCCCTTCGATATGGTCCCAATTCAAGTGTTGTTGT
GGGTGGTCATTCCATGGGCGGCGTTATTGTAGCTTCGGCAATGACAAATA
AGGATAACTTGCTGTCTGAAGCAATTGGAAAATTCACCGCTGTTATACTC
AGCGCTCCGGCAATTGACTGCGTTGTTTCGGGTGTGATCAACAAGGTCTT
ACAACCAGTAGCTCCTTATCTGTGCCGGATTCCCGGCTCAAGAGGTCTCA
CAAAAGGGGTTGGAATTCGTCCCGCCGATCTTTGCAAGAACCAAGAAGCA
GTAGATGCATACATAAACGACCCACTTGTCCATGACAAAGTAAGCGTTGG
TGTTGGTACTGATCTTCTTAGCTATGGTAATACCGTTCTGGAAGCTTTGA
AAGACGAGCCTGAATGCGTGCTTAACACGGTGCCAGTACTCGTTGTACAT
GGCGGTGATGATAAGGTTGTTCGAATGGAGGGGAGTGAGAGACTTGTACA
GGCTGTTAACGAAAAAGGAGCTGCCAAGCTCGTTAAGATCGATGGAGCTT
TTCATGAAACCTTCAATGAGAAACCGGAGGTTGGAAGTGACAAGTTCTTT
GACAGTGTGGCTGAGTTTCTTACATCTGTTTTCATCTAG
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Coding sequence (CDS) from alignment at tig00000222_pilon:98446..99384-

>Ggra10029.t1 ID=Ggra10029.t1|Name=Ggra10029.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000222_pilon:98446..99384- (Gracilaria gracilis GNS1m male)
ATGCCTCTGCACGAAGAGACAGAGGTTCTTCAATATCGCGATCCCAATCA
ACCCAACCTTCACATTGTATACTGGACTAAAACGTCATCACCGCAGATCG
AAAACCCCAAACTCTTCGTTTGGAATCATGGCGTCTGCGAACACTCCGCT
CGTTACAGGAATTTTGCGGAAAAGCTATTGAACCGTGTATCATCTTTAGA
CGCAATAATATCATATGATATGAGGAATCATGGAAAGTCCGACGGTGCAA
AAGGTGCGGCTAGACATCTCACGGATTATATCAGCGATTTATACAATCTG
ATATTACCACATGCTGCCCTTCGATATGGTCCCAATTCAAGTGTTGTTGT
GGGTGGTCATTCCATGGGCGGCGTTATTGTAGCTTCGGCAATGACAAATA
AGGATAACTTGCTGTCTGAAGCAATTGGAAAATTCACCGCTGTTATACTC
AGCGCTCCGGCAATTGACTGCGTTGTTTCGGGTGTGATCAACAAGGTCTT
ACAACCAGTAGCTCCTTATCTGTGCCGGATTCCCGGCTCAAGAGGTCTCA
CAAAAGGGGTTGGAATTCGTCCCGCCGATCTTTGCAAGAACCAAGAAGCA
GTAGATGCATACATAAACGACCCACTTGTCCATGACAAAGTAAGCGTTGG
TGTTGGTACTGATCTTCTTAGCTATGGTAATACCGTTCTGGAAGCTTTGA
AAGACGAGCCTGAATGCGTGCTTAACACGGTGCCAGTACTCGTTGTACAT
GGCGGTGATGATAAGGTTGTTCGAATGGAGGGGAGTGAGAGACTTGTACA
GGCTGTTAACGAAAAAGGAGCTGCCAAGCTCGTTAAGATCGATGGAGCTT
TTCATGAAACCTTCAATGAGAAACCGGAGGTTGGAAGTGACAAGTTCTTT
GACAGTGTGGCTGAGTTTCTTACATCTGTTTTCATCTAG
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