Ggra10028.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10028.t1
Unique NameGgra10028.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:97011..97829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10028Ggra10028Gracilaria gracilis GNS1m malegenetig00000222_pilon 97011..97829 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10028.t1.start1Ggra10028.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 97011..97013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10028.t1.CDS1Ggra10028.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 97011..97829 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10028.t1.exon1Ggra10028.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 97011..97829 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10028.t1.stop1Ggra10028.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 97827..97829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10028.t1Ggra10028.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 97011..97829 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10028.t1 ID=Ggra10028.t1|Name=Ggra10028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=273bp
MGACKPSYRCDCMGYEMCNRSQCAIYTADGSVDNNTQSTPFECHLTAGAA
ICTDYHHVIDTLEAVGYAAAQVDEVHGSAIRLLGDSSSTMHGIEDDAAEV
DDALRSIEPYLANLTAQETHGIELEAEIVSQSLAEALRLQQASSEMHLKL
HDVSVQVEGNGTVALQAASEVANLEQQLQQARGQSKSEARACTECSALQA
SIEMHTRVRQEAASRGGHDARNTRADAADIGQYAFLVHENRARSIAAKTR
VLEMVTVIVTRMSTSQIGVSHD*
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spliced messenger RNA

>Ggra10028.t1 ID=Ggra10028.t1|Name=Ggra10028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000222_pilon:97011..97829+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCCTGCAAGCCATCATATCGTTGTGATTGCATGGGCTATGAAAT
GTGTAACAGATCTCAGTGTGCCATATACACCGCCGATGGATCGGTGGATA
ATAACACCCAGTCTACACCTTTTGAATGTCACCTCACCGCTGGAGCCGCA
ATTTGCACAGACTATCACCATGTCATAGATACGCTCGAGGCCGTTGGGTA
CGCCGCCGCACAAGTGGACGAGGTTCATGGTTCTGCCATTCGTCTGCTGG
GCGACTCGTCGAGCACGATGCATGGAATCGAAGACGATGCTGCTGAGGTG
GATGATGCGTTGAGGAGCATTGAGCCCTACCTGGCTAATCTTACAGCTCA
AGAGACACATGGAATTGAGTTGGAGGCTGAGATTGTCTCCCAATCACTAG
CTGAAGCACTTCGTCTGCAGCAAGCTTCGTCTGAAATGCATCTCAAGCTC
CACGACGTAAGCGTCCAGGTTGAGGGGAATGGCACCGTTGCTTTGCAGGC
GGCTAGTGAGGTGGCCAATCTTGAACAACAGCTGCAACAAGCGCGGGGTC
AGAGCAAAAGTGAAGCGCGAGCATGTACAGAGTGCTCTGCGTTACAAGCC
AGCATCGAGATGCATACAAGAGTTCGACAAGAGGCAGCGTCTCGAGGTGG
ACATGACGCAAGAAATACCCGTGCGGATGCTGCGGATATTGGGCAGTATG
CTTTCCTGGTTCACGAGAATCGAGCTAGATCGATCGCCGCAAAGACAAGA
GTTTTAGAAATGGTTACCGTCATCGTTACTCGGATGAGCACATCTCAAAT
CGGAGTTTCACATGACTAG
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protein sequence of Ggra10028.t1

>Ggra10028.t1 ID=Ggra10028.t1|Name=Ggra10028.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=273bp
MGACKPSYRCDCMGYEMCNRSQCAIYTADGSVDNNTQSTPFECHLTAGAA
ICTDYHHVIDTLEAVGYAAAQVDEVHGSAIRLLGDSSSTMHGIEDDAAEV
DDALRSIEPYLANLTAQETHGIELEAEIVSQSLAEALRLQQASSEMHLKL
HDVSVQVEGNGTVALQAASEVANLEQQLQQARGQSKSEARACTECSALQA
SIEMHTRVRQEAASRGGHDARNTRADAADIGQYAFLVHENRARSIAAKTR
VLEMVTVIVTRMSTSQIGVSHD*
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mRNA from alignment at tig00000222_pilon:97011..97829+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10028.t1 ID=Ggra10028.t1|Name=Ggra10028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00000222_pilon:97011..97829+ (Gracilaria gracilis GNS1m male)
ATGGGTGCCTGCAAGCCATCATATCGTTGTGATTGCATGGGCTATGAAAT
GTGTAACAGATCTCAGTGTGCCATATACACCGCCGATGGATCGGTGGATA
ATAACACCCAGTCTACACCTTTTGAATGTCACCTCACCGCTGGAGCCGCA
ATTTGCACAGACTATCACCATGTCATAGATACGCTCGAGGCCGTTGGGTA
CGCCGCCGCACAAGTGGACGAGGTTCATGGTTCTGCCATTCGTCTGCTGG
GCGACTCGTCGAGCACGATGCATGGAATCGAAGACGATGCTGCTGAGGTG
GATGATGCGTTGAGGAGCATTGAGCCCTACCTGGCTAATCTTACAGCTCA
AGAGACACATGGAATTGAGTTGGAGGCTGAGATTGTCTCCCAATCACTAG
CTGAAGCACTTCGTCTGCAGCAAGCTTCGTCTGAAATGCATCTCAAGCTC
CACGACGTAAGCGTCCAGGTTGAGGGGAATGGCACCGTTGCTTTGCAGGC
GGCTAGTGAGGTGGCCAATCTTGAACAACAGCTGCAACAAGCGCGGGGTC
AGAGCAAAAGTGAAGCGCGAGCATGTACAGAGTGCTCTGCGTTACAAGCC
AGCATCGAGATGCATACAAGAGTTCGACAAGAGGCAGCGTCTCGAGGTGG
ACATGACGCAAGAAATACCCGTGCGGATGCTGCGGATATTGGGCAGTATG
CTTTCCTGGTTCACGAGAATCGAGCTAGATCGATCGCCGCAAAGACAAGA
GTTTTAGAAATGGTTACCGTCATCGTTACTCGGATGAGCACATCTCAAAT
CGGAGTTTCACATGACTAG
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Coding sequence (CDS) from alignment at tig00000222_pilon:97011..97829+

>Ggra10028.t1 ID=Ggra10028.t1|Name=Ggra10028.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00000222_pilon:97011..97829+ (Gracilaria gracilis GNS1m male)
ATGGGTGCCTGCAAGCCATCATATCGTTGTGATTGCATGGGCTATGAAAT
GTGTAACAGATCTCAGTGTGCCATATACACCGCCGATGGATCGGTGGATA
ATAACACCCAGTCTACACCTTTTGAATGTCACCTCACCGCTGGAGCCGCA
ATTTGCACAGACTATCACCATGTCATAGATACGCTCGAGGCCGTTGGGTA
CGCCGCCGCACAAGTGGACGAGGTTCATGGTTCTGCCATTCGTCTGCTGG
GCGACTCGTCGAGCACGATGCATGGAATCGAAGACGATGCTGCTGAGGTG
GATGATGCGTTGAGGAGCATTGAGCCCTACCTGGCTAATCTTACAGCTCA
AGAGACACATGGAATTGAGTTGGAGGCTGAGATTGTCTCCCAATCACTAG
CTGAAGCACTTCGTCTGCAGCAAGCTTCGTCTGAAATGCATCTCAAGCTC
CACGACGTAAGCGTCCAGGTTGAGGGGAATGGCACCGTTGCTTTGCAGGC
GGCTAGTGAGGTGGCCAATCTTGAACAACAGCTGCAACAAGCGCGGGGTC
AGAGCAAAAGTGAAGCGCGAGCATGTACAGAGTGCTCTGCGTTACAAGCC
AGCATCGAGATGCATACAAGAGTTCGACAAGAGGCAGCGTCTCGAGGTGG
ACATGACGCAAGAAATACCCGTGCGGATGCTGCGGATATTGGGCAGTATG
CTTTCCTGGTTCACGAGAATCGAGCTAGATCGATCGCCGCAAAGACAAGA
GTTTTAGAAATGGTTACCGTCATCGTTACTCGGATGAGCACATCTCAAAT
CGGAGTTTCACATGACTAG
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