Ggra10027.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10027.t1
Unique Name	Ggra10027.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	601

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000222_pilon	contig	tig00000222_pilon:90621..92423 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703958.1
Preferred name	srk1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08286,ko:K08794
KEGG Pathway	ko04921,ko04925,map04921,map04925
GOs	GO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue	1.7e-93
EggNOG OGs	KOG0032@1\|root,KOG0032@2759\|Eukaryota
EC	2.7.11.17
Description	protein serine/threonine kinase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10027	Ggra10027	Gracilaria gracilis GNS1m male	gene	tig00000222_pilon 90621..92423 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10027.t1.start1	Ggra10027.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000222_pilon 90621..90623 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10027.t1.CDS1	Ggra10027.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000222_pilon 90621..92423 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10027.t1.exon1	Ggra10027.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000222_pilon 90621..92423 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10027.t1.stop1	Ggra10027.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000222_pilon 92421..92423 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10027.t1	Ggra10027.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000222_pilon 90621..92423 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000222_pilon:90621..92423+
coding sequence from alignment at tig00000222_pilon:90621..92423+

mRNA sequence

>Ggra10027.t1 ID=Ggra10027.t1|Name=Ggra10027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=601bp
MRHSKSQLFGRRHQSPPYQPENMADGRHKRHHQNRHNRHHNHQHAQSHAP
HQQHHHNHNPAVDASRSRIGLSMALKGLLGGARRSDQPSVPHDDVLFKWG
NKRRQVFGMRAANGHDASLLSSSSAVSNDAPPLRYSNANLRVAGWLTKRG
KRLGSRVDRFFELNGSVLSNARTEHSNPTWTVNVRGSKVLAGPGREIIFK
VDKSFTSFFAPTDELHDKWIKALQAVCADVTDFYDFGKVIGRGAYSEVYL
ARDKQRNELCAIKVLERSNAEHAKLIDRELEVLRLLNHQNIVQIYDIFDS
ARETYVVMEYLAGGELLEMITENDHLSEKNSKQVIREVLQAVHYLHARGI
VHRDVKPENILCVNRGWPLRVKITDFGLSKSVGVGVGEDESDRVMRSQCG
TAYYLAPEIANSLPYGKPVDLWACGVVLYVMLAGKFPFYGKSGDKFMRRL
RAGVRFPEDEWSGISADAKALVRGLLDPSPASRLTAAQALQHRWLVDEAD
VTASSMPSRAVVEAQQKVQRRFNAATEPLSLQLAQFSASNRRARMRSAGT
EASVAEEEAEVVRTDNHSADLDYSEYEEEAVEQNKSEVMFEQERTDVEQL
*

spliced messenger RNA

>Ggra10027.t1 ID=Ggra10027.t1|Name=Ggra10027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1803bp|location=Sequence derived from alignment at tig00000222_pilon:90621..92423+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCACTCCAAGTCGCAGCTCTTTGGTCGCAGGCATCAGTCGCCCCC
GTACCAGCCGGAAAACATGGCCGACGGTCGTCACAAGCGCCATCACCAAA
ACCGCCACAACCGCCACCACAACCACCAACATGCGCAATCACACGCGCCG
CACCAACAACACCATCACAATCATAACCCGGCTGTGGACGCCAGTCGCTC
GCGCATCGGCCTCAGCATGGCGCTAAAGGGCTTGTTGGGCGGTGCGCGTC
GTTCGGACCAGCCTTCTGTTCCGCACGATGACGTGCTGTTCAAGTGGGGT
AATAAACGCCGTCAGGTGTTTGGCATGCGCGCGGCCAATGGTCATGACGC
TTCGTTGCTATCGTCGTCGTCGGCCGTGTCCAATGATGCGCCGCCTCTGC
GCTACTCCAATGCCAACTTGCGCGTGGCTGGCTGGCTGACCAAGCGTGGA
AAGAGGCTGGGATCCCGTGTCGATCGCTTCTTCGAGTTGAATGGAAGCGT
GCTGAGTAATGCTCGTACCGAGCATTCTAACCCTACCTGGACCGTCAATG
TGCGCGGCAGCAAGGTGCTGGCCGGTCCGGGTAGAGAGATTATCTTCAAG
GTAGATAAGTCTTTTACCAGCTTTTTCGCCCCTACGGATGAGCTGCATGA
CAAATGGATCAAGGCACTTCAGGCTGTGTGCGCTGATGTCACCGACTTTT
ATGACTTTGGAAAGGTCATTGGTCGAGGTGCCTATTCCGAGGTGTATCTC
GCCAGAGACAAGCAACGAAACGAGTTGTGTGCCATCAAGGTTTTGGAACG
TTCCAACGCCGAACATGCAAAACTCATAGACCGTGAACTGGAGGTCCTTC
GACTACTCAATCACCAGAATATTGTACAGATCTACGACATTTTCGACTCG
GCCAGGGAGACGTACGTGGTCATGGAGTATCTAGCAGGAGGCGAATTACT
GGAAATGATCACCGAAAACGATCATTTGTCGGAGAAAAACTCCAAACAGG
TGATTCGAGAGGTGCTACAAGCTGTGCATTACCTGCACGCACGAGGCATT
GTGCACAGGGATGTCAAGCCTGAAAACATCCTGTGCGTGAACCGTGGGTG
GCCGCTGCGTGTGAAGATTACCGATTTTGGTCTGTCCAAGAGCGTTGGCG
TGGGCGTGGGCGAGGATGAGTCGGACCGCGTGATGCGATCGCAGTGTGGA
ACGGCATACTACCTTGCTCCCGAGATTGCGAACAGCCTGCCGTACGGAAA
GCCTGTGGACCTGTGGGCTTGTGGAGTGGTACTGTATGTAATGCTGGCTG
GCAAGTTCCCGTTCTACGGCAAGTCGGGCGACAAGTTTATGCGGCGGTTA
CGCGCCGGGGTGCGCTTCCCCGAGGATGAATGGAGTGGCATCTCTGCGGA
CGCAAAGGCTCTGGTTCGAGGGCTGCTGGACCCGAGTCCAGCCTCGAGAC
TGACGGCGGCGCAGGCGTTGCAACACCGATGGTTGGTGGATGAGGCGGAC
GTGACGGCGTCGTCCATGCCGTCGAGAGCGGTTGTGGAGGCGCAACAAAA
GGTGCAGCGACGGTTTAACGCGGCGACGGAGCCGCTTTCTTTGCAGCTGG
CGCAGTTTTCGGCGTCCAACCGACGGGCCAggatgcgtagcgcgggcacg
gaggcgagcgtggcagaggaagaggcggaggtggTGAGGACGGACAACCA
CAGCGCGGACTTGGACTACTCGGAGTACGAAGAGGAGGCGGTGGAGCAGA
ACAAGAGCGAGGTGATGTTCGAGCAAGAGCGCACCGACGTGGAGCAACTA
TGA

protein sequence of Ggra10027.t1

>Ggra10027.t1 ID=Ggra10027.t1|Name=Ggra10027.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=601bp
MRHSKSQLFGRRHQSPPYQPENMADGRHKRHHQNRHNRHHNHQHAQSHAP
HQQHHHNHNPAVDASRSRIGLSMALKGLLGGARRSDQPSVPHDDVLFKWG
NKRRQVFGMRAANGHDASLLSSSSAVSNDAPPLRYSNANLRVAGWLTKRG
KRLGSRVDRFFELNGSVLSNARTEHSNPTWTVNVRGSKVLAGPGREIIFK
VDKSFTSFFAPTDELHDKWIKALQAVCADVTDFYDFGKVIGRGAYSEVYL
ARDKQRNELCAIKVLERSNAEHAKLIDRELEVLRLLNHQNIVQIYDIFDS
ARETYVVMEYLAGGELLEMITENDHLSEKNSKQVIREVLQAVHYLHARGI
VHRDVKPENILCVNRGWPLRVKITDFGLSKSVGVGVGEDESDRVMRSQCG
TAYYLAPEIANSLPYGKPVDLWACGVVLYVMLAGKFPFYGKSGDKFMRRL
RAGVRFPEDEWSGISADAKALVRGLLDPSPASRLTAAQALQHRWLVDEAD
VTASSMPSRAVVEAQQKVQRRFNAATEPLSLQLAQFSASNRRARMRSAGT
EASVAEEEAEVVRTDNHSADLDYSEYEEEAVEQNKSEVMFEQERTDVEQL
*

mRNA from alignment at tig00000222_pilon:90621..92423+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10027.t1 ID=Ggra10027.t1|Name=Ggra10027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1803bp|location=Sequence derived from alignment at tig00000222_pilon:90621..92423+ (Gracilaria gracilis GNS1m male)
ATGCGTCACTCCAAGTCGCAGCTCTTTGGTCGCAGGCATCAGTCGCCCCC
GTACCAGCCGGAAAACATGGCCGACGGTCGTCACAAGCGCCATCACCAAA
ACCGCCACAACCGCCACCACAACCACCAACATGCGCAATCACACGCGCCG
CACCAACAACACCATCACAATCATAACCCGGCTGTGGACGCCAGTCGCTC
GCGCATCGGCCTCAGCATGGCGCTAAAGGGCTTGTTGGGCGGTGCGCGTC
GTTCGGACCAGCCTTCTGTTCCGCACGATGACGTGCTGTTCAAGTGGGGT
AATAAACGCCGTCAGGTGTTTGGCATGCGCGCGGCCAATGGTCATGACGC
TTCGTTGCTATCGTCGTCGTCGGCCGTGTCCAATGATGCGCCGCCTCTGC
GCTACTCCAATGCCAACTTGCGCGTGGCTGGCTGGCTGACCAAGCGTGGA
AAGAGGCTGGGATCCCGTGTCGATCGCTTCTTCGAGTTGAATGGAAGCGT
GCTGAGTAATGCTCGTACCGAGCATTCTAACCCTACCTGGACCGTCAATG
TGCGCGGCAGCAAGGTGCTGGCCGGTCCGGGTAGAGAGATTATCTTCAAG
GTAGATAAGTCTTTTACCAGCTTTTTCGCCCCTACGGATGAGCTGCATGA
CAAATGGATCAAGGCACTTCAGGCTGTGTGCGCTGATGTCACCGACTTTT
ATGACTTTGGAAAGGTCATTGGTCGAGGTGCCTATTCCGAGGTGTATCTC
GCCAGAGACAAGCAACGAAACGAGTTGTGTGCCATCAAGGTTTTGGAACG
TTCCAACGCCGAACATGCAAAACTCATAGACCGTGAACTGGAGGTCCTTC
GACTACTCAATCACCAGAATATTGTACAGATCTACGACATTTTCGACTCG
GCCAGGGAGACGTACGTGGTCATGGAGTATCTAGCAGGAGGCGAATTACT
GGAAATGATCACCGAAAACGATCATTTGTCGGAGAAAAACTCCAAACAGG
TGATTCGAGAGGTGCTACAAGCTGTGCATTACCTGCACGCACGAGGCATT
GTGCACAGGGATGTCAAGCCTGAAAACATCCTGTGCGTGAACCGTGGGTG
GCCGCTGCGTGTGAAGATTACCGATTTTGGTCTGTCCAAGAGCGTTGGCG
TGGGCGTGGGCGAGGATGAGTCGGACCGCGTGATGCGATCGCAGTGTGGA
ACGGCATACTACCTTGCTCCCGAGATTGCGAACAGCCTGCCGTACGGAAA
GCCTGTGGACCTGTGGGCTTGTGGAGTGGTACTGTATGTAATGCTGGCTG
GCAAGTTCCCGTTCTACGGCAAGTCGGGCGACAAGTTTATGCGGCGGTTA
CGCGCCGGGGTGCGCTTCCCCGAGGATGAATGGAGTGGCATCTCTGCGGA
CGCAAAGGCTCTGGTTCGAGGGCTGCTGGACCCGAGTCCAGCCTCGAGAC
TGACGGCGGCGCAGGCGTTGCAACACCGATGGTTGGTGGATGAGGCGGAC
GTGACGGCGTCGTCCATGCCGTCGAGAGCGGTTGTGGAGGCGCAACAAAA
GGTGCAGCGACGGTTTAACGCGGCGACGGAGCCGCTTTCTTTGCAGCTGG
CGCAGTTTTCGGCGTCCAACCGACGGGCCAggatgcgtagcgcgggcacg
gaggcgagcgtggcagaggaagaggcggaggtggTGAGGACGGACAACCA
CAGCGCGGACTTGGACTACTCGGAGTACGAAGAGGAGGCGGTGGAGCAGA
ACAAGAGCGAGGTGATGTTCGAGCAAGAGCGCACCGACGTGGAGCAACTA
TGA

Coding sequence (CDS) from alignment at tig00000222_pilon:90621..92423+

>Ggra10027.t1 ID=Ggra10027.t1|Name=Ggra10027.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1803bp|location=Sequence derived from alignment at tig00000222_pilon:90621..92423+ (Gracilaria gracilis GNS1m male)
ATGCGTCACTCCAAGTCGCAGCTCTTTGGTCGCAGGCATCAGTCGCCCCC
GTACCAGCCGGAAAACATGGCCGACGGTCGTCACAAGCGCCATCACCAAA
ACCGCCACAACCGCCACCACAACCACCAACATGCGCAATCACACGCGCCG
CACCAACAACACCATCACAATCATAACCCGGCTGTGGACGCCAGTCGCTC
GCGCATCGGCCTCAGCATGGCGCTAAAGGGCTTGTTGGGCGGTGCGCGTC
GTTCGGACCAGCCTTCTGTTCCGCACGATGACGTGCTGTTCAAGTGGGGT
AATAAACGCCGTCAGGTGTTTGGCATGCGCGCGGCCAATGGTCATGACGC
TTCGTTGCTATCGTCGTCGTCGGCCGTGTCCAATGATGCGCCGCCTCTGC
GCTACTCCAATGCCAACTTGCGCGTGGCTGGCTGGCTGACCAAGCGTGGA
AAGAGGCTGGGATCCCGTGTCGATCGCTTCTTCGAGTTGAATGGAAGCGT
GCTGAGTAATGCTCGTACCGAGCATTCTAACCCTACCTGGACCGTCAATG
TGCGCGGCAGCAAGGTGCTGGCCGGTCCGGGTAGAGAGATTATCTTCAAG
GTAGATAAGTCTTTTACCAGCTTTTTCGCCCCTACGGATGAGCTGCATGA
CAAATGGATCAAGGCACTTCAGGCTGTGTGCGCTGATGTCACCGACTTTT
ATGACTTTGGAAAGGTCATTGGTCGAGGTGCCTATTCCGAGGTGTATCTC
GCCAGAGACAAGCAACGAAACGAGTTGTGTGCCATCAAGGTTTTGGAACG
TTCCAACGCCGAACATGCAAAACTCATAGACCGTGAACTGGAGGTCCTTC
GACTACTCAATCACCAGAATATTGTACAGATCTACGACATTTTCGACTCG
GCCAGGGAGACGTACGTGGTCATGGAGTATCTAGCAGGAGGCGAATTACT
GGAAATGATCACCGAAAACGATCATTTGTCGGAGAAAAACTCCAAACAGG
TGATTCGAGAGGTGCTACAAGCTGTGCATTACCTGCACGCACGAGGCATT
GTGCACAGGGATGTCAAGCCTGAAAACATCCTGTGCGTGAACCGTGGGTG
GCCGCTGCGTGTGAAGATTACCGATTTTGGTCTGTCCAAGAGCGTTGGCG
TGGGCGTGGGCGAGGATGAGTCGGACCGCGTGATGCGATCGCAGTGTGGA
ACGGCATACTACCTTGCTCCCGAGATTGCGAACAGCCTGCCGTACGGAAA
GCCTGTGGACCTGTGGGCTTGTGGAGTGGTACTGTATGTAATGCTGGCTG
GCAAGTTCCCGTTCTACGGCAAGTCGGGCGACAAGTTTATGCGGCGGTTA
CGCGCCGGGGTGCGCTTCCCCGAGGATGAATGGAGTGGCATCTCTGCGGA
CGCAAAGGCTCTGGTTCGAGGGCTGCTGGACCCGAGTCCAGCCTCGAGAC
TGACGGCGGCGCAGGCGTTGCAACACCGATGGTTGGTGGATGAGGCGGAC
GTGACGGCGTCGTCCATGCCGTCGAGAGCGGTTGTGGAGGCGCAACAAAA
GGTGCAGCGACGGTTTAACGCGGCGACGGAGCCGCTTTCTTTGCAGCTGG
CGCAGTTTTCGGCGTCCAACCGACGGGCCAggatgcgtagcgcgggcacg
gaggcgagcgtggcagaggaagaggcggaggtggTGAGGACGGACAACCA
CAGCGCGGACTTGGACTACTCGGAGTACGAAGAGGAGGCGGTGGAGCAGA
ACAAGAGCGAGGTGATGTTCGAGCAAGAGCGCACCGACGTGGAGCAACTA
TGA