Ggra10025.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10025.t1
Unique Name	Ggra10025.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	671

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000222_pilon	contig	tig00000222_pilon:86980..88992 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT634CT
PFAMs	SpoU_methylase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K19476
KEGG Pathway	ko04144,map04144
Evalue	3.6e-31
EggNOG OGs	COG0566@1\|root,KOG0838@2759\|Eukaryota
Description	rRNA methyltransferase
COG category	J
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10025	Ggra10025	Gracilaria gracilis GNS1m male	gene	tig00000222_pilon 86980..88992 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10025.t1.stop1	Ggra10025.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000222_pilon 86980..86982 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10025.t1.CDS1	Ggra10025.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000222_pilon 86980..88992 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10025.t1.exon1	Ggra10025.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000222_pilon 86980..88992 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10025.t1.start1	Ggra10025.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000222_pilon 88990..88992 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10025.t1	Ggra10025.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000222_pilon 86980..88992 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000222_pilon:86980..88992-
coding sequence from alignment at tig00000222_pilon:86980..88992-

mRNA sequence

>Ggra10025.t1 ID=Ggra10025.t1|Name=Ggra10025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=671bp
MPPHAVVHHPTPHRHIAFSSVAPLQLERHSCNSRAHKRRVAPRHAASCSV
SKRRSSSPRSLRKHHAPEQTTSMTRAQLLREQSLHAQDVRLFDTMTPARA
QLFARALSNRSRHFTFVLDGVQGPHNLAAIVRSCDAYGIQDLHIISNEYP
TKKPNNAQQHALQRMSVMHRFEHDQSVRQVSKGCHKWLTISEYDAINDCV
KTLKNNGYRIIVSSLSSSAKPLSSVDLSSKCAFVFGNERYGVTALMNEHA
DELFTIPMMGFVESMNVSVAVATTACLIMHHVSKVLPACDIFLSAQQRRE
LAHSWLTKRRAPHAHPKLLPTKRDMTRLGERKEAAIIARGLFSAVDDHSV
GDGEFWRLSFRLAAESGVVLCTYLAKRKFGALGDKHFARRCETICDGVAG
THAVSFEAVRRSRKAGTTRNGLLEYFKRLCRLIGERYERYFDREGMPLLP
LFAAESEGKLEQVHDSVSEVCYSVCLEVGRQEFALEENKVNELISTADAV
DFALCIVDTIRCNDQSKRAQFVQLARQATAHKQQALQLVRERHATRKLHL
HAARALKTDGAPLDDAQRDALQAMLRLAHAAWLCSETHRAAWRRESNALL
MRTVHSPTSALLERVLCEAFAEMTLLECAPQLAVARLLLECEQTLAPLRA
VAARHAAAGCQHDVLHQRRQ*

spliced messenger RNA

>Ggra10025.t1 ID=Ggra10025.t1|Name=Ggra10025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2013bp|location=Sequence derived from alignment at tig00000222_pilon:86980..88992- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCCACGCTGTTGTCCACCACCCCACGCCACACCGTCACATCGC
CTTCTCTTCCGTCGCCCCGCTACAGCTTGAGCGCCACTCGTGCAACTCAC
GCGCGCACAAGCGCCGTGTCGCGCCCCGCCACGCCGCCAGCTGCAGCGTT
TCGAAGCGACGCTCGTCGTCGCCGAGGTCGCTGCGCAAGCACCATGCGCC
GGAGCAAACGACGTCCATGACGCGCGCACAGCTGTTGCGCGAGCAGTCGC
TACATGCTCAGGACGTGCGTCTGTTTGACACCATGACGCCCGCGAGGGCT
CAGTTGTTTGCGCGCGCGTTGAGCAACCGAAGCAGACATTTTACGTTTGT
GTTGGACGGTGTGCAGGGGCCACACAACCTGGCGGCCATTGTTCGTTCTT
GTGATGCATACGGTATTCAGGATCTGCATATTATATCGAATGAATACCCG
ACAAAGAAACCGAACAATGCGCAGCAACACGCTTTGCAGCGCATGTCAGT
CATGCACCGATTTGAGCATGATCAAAGCGTGAGACAAGTGAGCAAGGGCT
GTCATAAATGGCTCACTATATCAGAGTATGATGCCATCAATGACTGTGTC
AAGACTCTCAAGAACAATGGATATCGAATCATTGTGTCTTCGTTGTCATC
GTCCGCAAAGCCTCTGTCTTCGGTAGATCTCTCTTCAAAGTGCGCGTTTG
TATTCGGCAACGAACGTTACGGCGTCACGGCGCTGATGAATGAGCATGCC
GATGAATTGTTCACCATCCCCATGATGGGCTTTGTTGAGAGCATGAATGT
TTCCGTCGCTGTGGCAACCACCGCGTGTCTCATCATGCACCATGTGAGCA
AAGTACTGCCTGCGTGTGACATTTTTCTCTCTGCGCAGCAACGTAGGGAA
CTGGCTCATAGCTGGCTCACAAAACGGCGTGCACCGCATGCGCATCCGAA
GCTACTGCCTACGAAGCGGGATATGACTCGACTCGGCGAAAGAAAGGAGG
CTGCCATCATTGCGAGAGGTTTGTTTTCAGCGGTAGACGACCACTCGGTT
GGCGATGGTGAGTTTTGGCGCCTTTCGTTTCGGCTTGCAGCAGAGTCCGG
CGTTGTGCTGTGCACGTATCTCGCCAAGCGAAAGTTTGGCGCTCTGGGTG
ATAAACATTTTGCAAGGAGATGTGAGACGATTTGCGATGGTGTGGCTGGA
ACGCATGCGGTGTCGTTTGAGGCGGTGAGACGGTCTCGAAAGGCAGGCAC
GACGAGGAACGGGTTGCTTGAGTACTTTAAGCGGCTGTGCAGGCTAATAG
GTGAGCGCTATGAGCGCTATTTTGACAGAGAGGGCATGCCGTTGTTACCG
CTGTTTGCAGCTGAATCAGAAGGCAAGCTCGAACAGGTGCACGATTCAGT
GAGCGAAGTGTGCTACTCCGTTTGTCTCGAGGTCGGGCGGCAGGAGTTTG
CACTGGAGGAGAACAAGGTGAATGAGCTGATTTCAACGGCAGATGCGGTA
GATTTTGCGCTGTGTATCGTGGACACCATCCGCTGCAACGACCAAAGCAA
ACGCGCGCAATTCGTGCAACTGGCACGTCAGGCCACGGCTCACAAACAGC
AGGCGCTGCAGCTTGTTCGCGAGCGACATGCCACACGCAAGCTCCACTTA
CACGCCGCACGCGCACTCAAGACGGACGGCGCGCCGCTCGACGACGCGCA
GCGCGACGCGTTACAGGCGATGCTACGACTGGCGCACGCGGCGTGGCTGT
GTTCCGAGACGCATCGTGCGGCGTGGCGGCGCGAATCGAACGCGCTGTTG
ATGCGCACCGTTCACTCGCCGACGTCCGCGCTGCTGGAGCGCGTGCTGTG
CGAGGCGTTCGCCGAGATGACGTTGCTCGAGTGCGCGCCGCAGCTCGCCG
TGGCTCGACTGCTGCTGGAGTGCGAACAGACGCTGGCGCCGCTGAGAGCG
GTGGCGGCGCGGCACGCAGCCGCCGGCTGTCAGCACGATGTGTTACACCA
GCGCCGTCAGTGA

protein sequence of Ggra10025.t1

>Ggra10025.t1 ID=Ggra10025.t1|Name=Ggra10025.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=671bp
MPPHAVVHHPTPHRHIAFSSVAPLQLERHSCNSRAHKRRVAPRHAASCSV
SKRRSSSPRSLRKHHAPEQTTSMTRAQLLREQSLHAQDVRLFDTMTPARA
QLFARALSNRSRHFTFVLDGVQGPHNLAAIVRSCDAYGIQDLHIISNEYP
TKKPNNAQQHALQRMSVMHRFEHDQSVRQVSKGCHKWLTISEYDAINDCV
KTLKNNGYRIIVSSLSSSAKPLSSVDLSSKCAFVFGNERYGVTALMNEHA
DELFTIPMMGFVESMNVSVAVATTACLIMHHVSKVLPACDIFLSAQQRRE
LAHSWLTKRRAPHAHPKLLPTKRDMTRLGERKEAAIIARGLFSAVDDHSV
GDGEFWRLSFRLAAESGVVLCTYLAKRKFGALGDKHFARRCETICDGVAG
THAVSFEAVRRSRKAGTTRNGLLEYFKRLCRLIGERYERYFDREGMPLLP
LFAAESEGKLEQVHDSVSEVCYSVCLEVGRQEFALEENKVNELISTADAV
DFALCIVDTIRCNDQSKRAQFVQLARQATAHKQQALQLVRERHATRKLHL
HAARALKTDGAPLDDAQRDALQAMLRLAHAAWLCSETHRAAWRRESNALL
MRTVHSPTSALLERVLCEAFAEMTLLECAPQLAVARLLLECEQTLAPLRA
VAARHAAAGCQHDVLHQRRQ*

mRNA from alignment at tig00000222_pilon:86980..88992-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10025.t1 ID=Ggra10025.t1|Name=Ggra10025.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2013bp|location=Sequence derived from alignment at tig00000222_pilon:86980..88992- (Gracilaria gracilis GNS1m male)
ATGCCGCCCCACGCTGTTGTCCACCACCCCACGCCACACCGTCACATCGC
CTTCTCTTCCGTCGCCCCGCTACAGCTTGAGCGCCACTCGTGCAACTCAC
GCGCGCACAAGCGCCGTGTCGCGCCCCGCCACGCCGCCAGCTGCAGCGTT
TCGAAGCGACGCTCGTCGTCGCCGAGGTCGCTGCGCAAGCACCATGCGCC
GGAGCAAACGACGTCCATGACGCGCGCACAGCTGTTGCGCGAGCAGTCGC
TACATGCTCAGGACGTGCGTCTGTTTGACACCATGACGCCCGCGAGGGCT
CAGTTGTTTGCGCGCGCGTTGAGCAACCGAAGCAGACATTTTACGTTTGT
GTTGGACGGTGTGCAGGGGCCACACAACCTGGCGGCCATTGTTCGTTCTT
GTGATGCATACGGTATTCAGGATCTGCATATTATATCGAATGAATACCCG
ACAAAGAAACCGAACAATGCGCAGCAACACGCTTTGCAGCGCATGTCAGT
CATGCACCGATTTGAGCATGATCAAAGCGTGAGACAAGTGAGCAAGGGCT
GTCATAAATGGCTCACTATATCAGAGTATGATGCCATCAATGACTGTGTC
AAGACTCTCAAGAACAATGGATATCGAATCATTGTGTCTTCGTTGTCATC
GTCCGCAAAGCCTCTGTCTTCGGTAGATCTCTCTTCAAAGTGCGCGTTTG
TATTCGGCAACGAACGTTACGGCGTCACGGCGCTGATGAATGAGCATGCC
GATGAATTGTTCACCATCCCCATGATGGGCTTTGTTGAGAGCATGAATGT
TTCCGTCGCTGTGGCAACCACCGCGTGTCTCATCATGCACCATGTGAGCA
AAGTACTGCCTGCGTGTGACATTTTTCTCTCTGCGCAGCAACGTAGGGAA
CTGGCTCATAGCTGGCTCACAAAACGGCGTGCACCGCATGCGCATCCGAA
GCTACTGCCTACGAAGCGGGATATGACTCGACTCGGCGAAAGAAAGGAGG
CTGCCATCATTGCGAGAGGTTTGTTTTCAGCGGTAGACGACCACTCGGTT
GGCGATGGTGAGTTTTGGCGCCTTTCGTTTCGGCTTGCAGCAGAGTCCGG
CGTTGTGCTGTGCACGTATCTCGCCAAGCGAAAGTTTGGCGCTCTGGGTG
ATAAACATTTTGCAAGGAGATGTGAGACGATTTGCGATGGTGTGGCTGGA
ACGCATGCGGTGTCGTTTGAGGCGGTGAGACGGTCTCGAAAGGCAGGCAC
GACGAGGAACGGGTTGCTTGAGTACTTTAAGCGGCTGTGCAGGCTAATAG
GTGAGCGCTATGAGCGCTATTTTGACAGAGAGGGCATGCCGTTGTTACCG
CTGTTTGCAGCTGAATCAGAAGGCAAGCTCGAACAGGTGCACGATTCAGT
GAGCGAAGTGTGCTACTCCGTTTGTCTCGAGGTCGGGCGGCAGGAGTTTG
CACTGGAGGAGAACAAGGTGAATGAGCTGATTTCAACGGCAGATGCGGTA
GATTTTGCGCTGTGTATCGTGGACACCATCCGCTGCAACGACCAAAGCAA
ACGCGCGCAATTCGTGCAACTGGCACGTCAGGCCACGGCTCACAAACAGC
AGGCGCTGCAGCTTGTTCGCGAGCGACATGCCACACGCAAGCTCCACTTA
CACGCCGCACGCGCACTCAAGACGGACGGCGCGCCGCTCGACGACGCGCA
GCGCGACGCGTTACAGGCGATGCTACGACTGGCGCACGCGGCGTGGCTGT
GTTCCGAGACGCATCGTGCGGCGTGGCGGCGCGAATCGAACGCGCTGTTG
ATGCGCACCGTTCACTCGCCGACGTCCGCGCTGCTGGAGCGCGTGCTGTG
CGAGGCGTTCGCCGAGATGACGTTGCTCGAGTGCGCGCCGCAGCTCGCCG
TGGCTCGACTGCTGCTGGAGTGCGAACAGACGCTGGCGCCGCTGAGAGCG
GTGGCGGCGCGGCACGCAGCCGCCGGCTGTCAGCACGATGTGTTACACCA
GCGCCGTCAGTGA

Coding sequence (CDS) from alignment at tig00000222_pilon:86980..88992-

>Ggra10025.t1 ID=Ggra10025.t1|Name=Ggra10025.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2013bp|location=Sequence derived from alignment at tig00000222_pilon:86980..88992- (Gracilaria gracilis GNS1m male)
ATGCCGCCCCACGCTGTTGTCCACCACCCCACGCCACACCGTCACATCGC
CTTCTCTTCCGTCGCCCCGCTACAGCTTGAGCGCCACTCGTGCAACTCAC
GCGCGCACAAGCGCCGTGTCGCGCCCCGCCACGCCGCCAGCTGCAGCGTT
TCGAAGCGACGCTCGTCGTCGCCGAGGTCGCTGCGCAAGCACCATGCGCC
GGAGCAAACGACGTCCATGACGCGCGCACAGCTGTTGCGCGAGCAGTCGC
TACATGCTCAGGACGTGCGTCTGTTTGACACCATGACGCCCGCGAGGGCT
CAGTTGTTTGCGCGCGCGTTGAGCAACCGAAGCAGACATTTTACGTTTGT
GTTGGACGGTGTGCAGGGGCCACACAACCTGGCGGCCATTGTTCGTTCTT
GTGATGCATACGGTATTCAGGATCTGCATATTATATCGAATGAATACCCG
ACAAAGAAACCGAACAATGCGCAGCAACACGCTTTGCAGCGCATGTCAGT
CATGCACCGATTTGAGCATGATCAAAGCGTGAGACAAGTGAGCAAGGGCT
GTCATAAATGGCTCACTATATCAGAGTATGATGCCATCAATGACTGTGTC
AAGACTCTCAAGAACAATGGATATCGAATCATTGTGTCTTCGTTGTCATC
GTCCGCAAAGCCTCTGTCTTCGGTAGATCTCTCTTCAAAGTGCGCGTTTG
TATTCGGCAACGAACGTTACGGCGTCACGGCGCTGATGAATGAGCATGCC
GATGAATTGTTCACCATCCCCATGATGGGCTTTGTTGAGAGCATGAATGT
TTCCGTCGCTGTGGCAACCACCGCGTGTCTCATCATGCACCATGTGAGCA
AAGTACTGCCTGCGTGTGACATTTTTCTCTCTGCGCAGCAACGTAGGGAA
CTGGCTCATAGCTGGCTCACAAAACGGCGTGCACCGCATGCGCATCCGAA
GCTACTGCCTACGAAGCGGGATATGACTCGACTCGGCGAAAGAAAGGAGG
CTGCCATCATTGCGAGAGGTTTGTTTTCAGCGGTAGACGACCACTCGGTT
GGCGATGGTGAGTTTTGGCGCCTTTCGTTTCGGCTTGCAGCAGAGTCCGG
CGTTGTGCTGTGCACGTATCTCGCCAAGCGAAAGTTTGGCGCTCTGGGTG
ATAAACATTTTGCAAGGAGATGTGAGACGATTTGCGATGGTGTGGCTGGA
ACGCATGCGGTGTCGTTTGAGGCGGTGAGACGGTCTCGAAAGGCAGGCAC
GACGAGGAACGGGTTGCTTGAGTACTTTAAGCGGCTGTGCAGGCTAATAG
GTGAGCGCTATGAGCGCTATTTTGACAGAGAGGGCATGCCGTTGTTACCG
CTGTTTGCAGCTGAATCAGAAGGCAAGCTCGAACAGGTGCACGATTCAGT
GAGCGAAGTGTGCTACTCCGTTTGTCTCGAGGTCGGGCGGCAGGAGTTTG
CACTGGAGGAGAACAAGGTGAATGAGCTGATTTCAACGGCAGATGCGGTA
GATTTTGCGCTGTGTATCGTGGACACCATCCGCTGCAACGACCAAAGCAA
ACGCGCGCAATTCGTGCAACTGGCACGTCAGGCCACGGCTCACAAACAGC
AGGCGCTGCAGCTTGTTCGCGAGCGACATGCCACACGCAAGCTCCACTTA
CACGCCGCACGCGCACTCAAGACGGACGGCGCGCCGCTCGACGACGCGCA
GCGCGACGCGTTACAGGCGATGCTACGACTGGCGCACGCGGCGTGGCTGT
GTTCCGAGACGCATCGTGCGGCGTGGCGGCGCGAATCGAACGCGCTGTTG
ATGCGCACCGTTCACTCGCCGACGTCCGCGCTGCTGGAGCGCGTGCTGTG
CGAGGCGTTCGCCGAGATGACGTTGCTCGAGTGCGCGCCGCAGCTCGCCG
TGGCTCGACTGCTGCTGGAGTGCGAACAGACGCTGGCGCCGCTGAGAGCG
GTGGCGGCGCGGCACGCAGCCGCCGGCTGTCAGCACGATGTGTTACACCA
GCGCCGTCAGTGA