Ggra10024.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10024.t1
Unique NameGgra10024.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length155
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:85775..86395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010055873.1
PFAMsNDK
Max annot lvl35493|Streptophyta
KEGG rclassRC00002
KEGG koko:K00940
KEGG ReactionR00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
GOsGO:0003674,GO:0003824,GO:0004550,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008270,GO:0009117,GO:0009132,GO:0009507,GO:0009534,GO:0009536,GO:0009543,GO:0009579,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034641,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0046939,GO:0050896,GO:0050897,GO:0055086,GO:0070013,GO:0071704,GO:1901360
Evalue5.94e-63
EggNOG OGsCOG0105@1|root,KOG0888@2759|Eukaryota,37HQK@33090|Viridiplantae,3G9AR@35493|Streptophyta
EC2.7.4.6
DescriptionNucleoside diphosphate kinase
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10024Ggra10024Gracilaria gracilis GNS1m malegenetig00000222_pilon 85775..86395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10024.t1Ggra10024.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 85775..86395 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10024.t1.stop1Ggra10024.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 85775..85777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10024.t1.CDS1Ggra10024.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 85775..85886 -
Ggra10024.t1.CDS2Ggra10024.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000222_pilon 85951..86040 -
Ggra10024.t1.CDS3Ggra10024.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000222_pilon 86133..86395 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10024.t1.exon1Ggra10024.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 85775..85886 -
Ggra10024.t1.exon2Ggra10024.t1.exon2Gracilaria gracilis GNS1m maleexontig00000222_pilon 85951..86040 -
Ggra10024.t1.exon3Ggra10024.t1.exon3Gracilaria gracilis GNS1m maleexontig00000222_pilon 86133..86395 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10024.t1.intron1Ggra10024.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000222_pilon 85887..85950 -
Ggra10024.t1.intron2Ggra10024.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000222_pilon 86041..86132 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10024.t1.start1Ggra10024.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 86393..86395 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10024.t1 ID=Ggra10024.t1|Name=Ggra10024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=155bp
MADKSERSYIMLKPDAVQRGLVGEVIQRFEKRGFKLVALKLVTPTLDMAK
KHYYDLAERPFFPTLCKFLSSGPVVAMVFEGEDVIRQGRRMIGATSPLAA
DPGTIRGDLAIITGKNIIHGSDSKESAEAEIALWFKPEELNSWSKTDIEA
WVYE*
back to top

spliced messenger RNA

>Ggra10024.t1 ID=Ggra10024.t1|Name=Ggra10024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp|location=Sequence derived from alignment at tig00000222_pilon:85775..86395- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGATAAGAGCGAGCGCTCTTATATCATGCTCAAGCCGGATGCCGT
GCAGCGCGGCCTGGTGGGCGAGGTTATACAGCGCTTCGAGAAGAGGGGTT
TCAAACTGGTCGCGCTCAAGCTTGTCACGCCCACTTTGGACATGGCTAAA
AAGCATTACTACGACTTGGCGGAACGCCCGTTCTTCCCGACGCTGTGCAA
GTTTCTGAGCAGTGGTCCCGTCGTCGCCATGGTTTTTGAGGGCGAGGATG
TTATTCGACAGGGACGGAGGATGATCGGCGCTACCAGTCCGCTTGCGGCC
GATCCGGGCACGATTCGAGGCGATCTTGCCATCATTACTGGCAAAAACAT
CATTCATGGAAGCGATTCTAAAGAGTCTGCAGAAGCCGAGATAGCTCTTT
GGTTCAAGCCGGAGGAGCTCAATTCGTGGAGCAAGACCGACATTGAGGCA
TGGGTTTATGAGTAG
back to top

protein sequence of Ggra10024.t1

>Ggra10024.t1 ID=Ggra10024.t1|Name=Ggra10024.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=155bp
MADKSERSYIMLKPDAVQRGLVGEVIQRFEKRGFKLVALKLVTPTLDMAK
KHYYDLAERPFFPTLCKFLSSGPVVAMVFEGEDVIRQGRRMIGATSPLAA
DPGTIRGDLAIITGKNIIHGSDSKESAEAEIALWFKPEELNSWSKTDIEA
WVYE*
back to top

mRNA from alignment at tig00000222_pilon:85775..86395-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10024.t1 ID=Ggra10024.t1|Name=Ggra10024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000222_pilon:85775..86395- (Gracilaria gracilis GNS1m male)
ATGGCGGATAAGAGCGAGCGCTCTTATATCATGCTCAAGCCGGATGCCGT
GCAGCGCGGCCTGGTGGGCGAGGTTATACAGCGCTTCGAGAAGAGGGGTT
TCAAACTGGTCGCGCTCAAGCTTGTCACGCCCACTTTGGACATGGCTAAA
AAGCATTACTACGACTTGGCGGAACGCCCGTTCTTCCCGACGCTGTGCAA
GTTTCTGAGCAGTGGTCCCGTCGTCGCCATGGTTTTTGAGGGCGAGGATG
TTATTCGACAGGGGTGCGTTGCTTTTGTTTGTTGTTGTCTCTCTCTCTCT
CATTGTGCTTTTTTTTTTTTGCTGACTTTTTGTTTGCGTTTTCATCTGCG
TGTAGACGGAGGATGATCGGCGCTACCAGTCCGCTTGCGGCCGATCCGGG
CACGATTCGAGGCGATCTTGCCATCATTACTGGCAAAAACATCATGTAAG
TGTTTCTTTCTTGTACTGCAATACCAAGCACTTGTTGTCCAACTAACATT
TTCTTGCAGTCATGGAAGCGATTCTAAAGAGTCTGCAGAAGCCGAGATAG
CTCTTTGGTTCAAGCCGGAGGAGCTCAATTCGTGGAGCAAGACCGACATT
GAGGCATGGGTTTATGAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000222_pilon:85775..86395-

>Ggra10024.t1 ID=Ggra10024.t1|Name=Ggra10024.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=465bp|location=Sequence derived from alignment at tig00000222_pilon:85775..86395- (Gracilaria gracilis GNS1m male)
ATGGCGGATAAGAGCGAGCGCTCTTATATCATGCTCAAGCCGGATGCCGT
GCAGCGCGGCCTGGTGGGCGAGGTTATACAGCGCTTCGAGAAGAGGGGTT
TCAAACTGGTCGCGCTCAAGCTTGTCACGCCCACTTTGGACATGGCTAAA
AAGCATTACTACGACTTGGCGGAACGCCCGTTCTTCCCGACGCTGTGCAA
GTTTCTGAGCAGTGGTCCCGTCGTCGCCATGGTTTTTGAGGGCGAGGATG
TTATTCGACAGGGACGGAGGATGATCGGCGCTACCAGTCCGCTTGCGGCC
GATCCGGGCACGATTCGAGGCGATCTTGCCATCATTACTGGCAAAAACAT
CATTCATGGAAGCGATTCTAAAGAGTCTGCAGAAGCCGAGATAGCTCTTT
GGTTCAAGCCGGAGGAGCTCAATTCGTGGAGCAAGACCGACATTGAGGCA
TGGGTTTATGAGTAG
back to top