Ggra10023.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10023.t1
Unique NameGgra10023.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:83033..83593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_019_00115.1
PFAMsCDP-OH_P_transf
Max annot lvl35493|Streptophyta
KEGG rclassRC00002,RC00017
KEGG koko:K08744
KEGG ReactionR02030
KEGG Pathwayko00564,ko01100,map00564,map01100
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0016020,GO:0016740,GO:0016772,GO:0016780,GO:0019637,GO:0030145,GO:0030572,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032048,GO:0032049,GO:0033993,GO:0042221,GO:0042493,GO:0043167,GO:0043169,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0046683,GO:0046872,GO:0046914,GO:0050896,GO:0071704,GO:0090407,GO:0097066,GO:0097068,GO:1901576,GO:1901698,GO:1901700,GO:1904386,GO:1905711
Evalue1.26e-31
EggNOG OGsCOG0558@1|root,KOG1617@2759|Eukaryota,37HY8@33090|Viridiplantae,3GD39@35493|Streptophyta
EC2.7.8.41
DescriptionBelongs to the CDP-alcohol phosphatidyltransferase class-I family
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10023Ggra10023Gracilaria gracilis GNS1m malegenetig00000222_pilon 83033..83593 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10023.t1.stop1Ggra10023.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 83033..83035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10023.t1.CDS1Ggra10023.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 83033..83593 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10023.t1.exon1Ggra10023.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 83033..83593 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10023.t1.start1Ggra10023.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 83591..83593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10023.t1Ggra10023.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 83033..83593 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10023.t1 ID=Ggra10023.t1|Name=Ggra10023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=187bp
MITCGRIAIAPVIGYWIINDEYDLALGGLVFAAISDWLDGVLARKLKLRT
VIGSYLDPAADKLLITISSLSLASQQIIPAWLVSLIIARDVGLVTGWMAL
TRRTHPHHSFRDLVQVTRKSAVEPILISKLNTTFQIALTFAGVVNAGEMG
TLSDGTLQTIGFATAFTTCASGFSYGRQFWTRWNRL*
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spliced messenger RNA

>Ggra10023.t1 ID=Ggra10023.t1|Name=Ggra10023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000222_pilon:83033..83593- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACCTGTGGACGTATAGCAATAGCACCAGTAATCGGATACTGGAT
CATAAACGACGAATATGACCTTGCGCTTGGTGGTCTTGTGTTTGCTGCCA
TATCCGATTGGCTTGATGGGGTTCTAGCCAGAAAGCTCAAGCTGCGCACC
GTCATTGGATCCTATTTAGACCCAGCTGCCGACAAATTGCTCATAACCAT
ATCCTCGTTGAGCCTCGCTTCTCAACAGATAATTCCCGCATGGCTTGTTT
CCCTTATCATCGCAAGGGATGTTGGCTTGGTTACTGGGTGGATGGCGCTC
ACACGTAGAACTCATCCGCACCACTCTTTTCGAGACCTTGTTCAAGTTAC
GCGGAAGAGCGCCGTGGAACCTATTCTCATTTCGAAGCTGAACACTACGT
TTCAAATCGCGCTTACCTTTGCTGGCGTTGTCAACGCCGGTGAAATGGGT
ACATTGAGTGACGGCACTTTACAAACCATCGGATTCGCCACTGCGTTTAC
CACATGTGCGTCCGGTTTCTCATATGGGCGACAATTCTGGACACGGTGGA
ATCGCCTTTGA
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protein sequence of Ggra10023.t1

>Ggra10023.t1 ID=Ggra10023.t1|Name=Ggra10023.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=187bp
MITCGRIAIAPVIGYWIINDEYDLALGGLVFAAISDWLDGVLARKLKLRT
VIGSYLDPAADKLLITISSLSLASQQIIPAWLVSLIIARDVGLVTGWMAL
TRRTHPHHSFRDLVQVTRKSAVEPILISKLNTTFQIALTFAGVVNAGEMG
TLSDGTLQTIGFATAFTTCASGFSYGRQFWTRWNRL*
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mRNA from alignment at tig00000222_pilon:83033..83593-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10023.t1 ID=Ggra10023.t1|Name=Ggra10023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000222_pilon:83033..83593- (Gracilaria gracilis GNS1m male)
ATGATCACCTGTGGACGTATAGCAATAGCACCAGTAATCGGATACTGGAT
CATAAACGACGAATATGACCTTGCGCTTGGTGGTCTTGTGTTTGCTGCCA
TATCCGATTGGCTTGATGGGGTTCTAGCCAGAAAGCTCAAGCTGCGCACC
GTCATTGGATCCTATTTAGACCCAGCTGCCGACAAATTGCTCATAACCAT
ATCCTCGTTGAGCCTCGCTTCTCAACAGATAATTCCCGCATGGCTTGTTT
CCCTTATCATCGCAAGGGATGTTGGCTTGGTTACTGGGTGGATGGCGCTC
ACACGTAGAACTCATCCGCACCACTCTTTTCGAGACCTTGTTCAAGTTAC
GCGGAAGAGCGCCGTGGAACCTATTCTCATTTCGAAGCTGAACACTACGT
TTCAAATCGCGCTTACCTTTGCTGGCGTTGTCAACGCCGGTGAAATGGGT
ACATTGAGTGACGGCACTTTACAAACCATCGGATTCGCCACTGCGTTTAC
CACATGTGCGTCCGGTTTCTCATATGGGCGACAATTCTGGACACGGTGGA
ATCGCCTTTGA
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Coding sequence (CDS) from alignment at tig00000222_pilon:83033..83593-

>Ggra10023.t1 ID=Ggra10023.t1|Name=Ggra10023.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=561bp|location=Sequence derived from alignment at tig00000222_pilon:83033..83593- (Gracilaria gracilis GNS1m male)
ATGATCACCTGTGGACGTATAGCAATAGCACCAGTAATCGGATACTGGAT
CATAAACGACGAATATGACCTTGCGCTTGGTGGTCTTGTGTTTGCTGCCA
TATCCGATTGGCTTGATGGGGTTCTAGCCAGAAAGCTCAAGCTGCGCACC
GTCATTGGATCCTATTTAGACCCAGCTGCCGACAAATTGCTCATAACCAT
ATCCTCGTTGAGCCTCGCTTCTCAACAGATAATTCCCGCATGGCTTGTTT
CCCTTATCATCGCAAGGGATGTTGGCTTGGTTACTGGGTGGATGGCGCTC
ACACGTAGAACTCATCCGCACCACTCTTTTCGAGACCTTGTTCAAGTTAC
GCGGAAGAGCGCCGTGGAACCTATTCTCATTTCGAAGCTGAACACTACGT
TTCAAATCGCGCTTACCTTTGCTGGCGTTGTCAACGCCGGTGAAATGGGT
ACATTGAGTGACGGCACTTTACAAACCATCGGATTCGCCACTGCGTTTAC
CACATGTGCGTCCGGTTTCTCATATGGGCGACAATTCTGGACACGGTGGA
ATCGCCTTTGA
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