Ggra1002.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1002.t1
Unique NameGgra1002.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:125460..125930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1002Ggra1002Gracilaria gracilis GNS1m malegenetig00000027_pilon 125460..125930 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1002.t1.stop1Ggra1002.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 125460..125462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1002.t1.CDS1Ggra1002.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 125460..125930 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1002.t1.exon1Ggra1002.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 125460..125930 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1002.t1.start1Ggra1002.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 125928..125930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1002.t1Ggra1002.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 125460..125930 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1002.t1 ID=Ggra1002.t1|Name=Ggra1002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=157bp
MPDDCYRPMSGTTVSVYEKMFVLTINDGIPLQCAEAYLFVFRQADLTPMI
VKYPKIDIQLSEFPGGSMSGADVTRYCETTQPKRKREMFPVTETKGKFVA
AVKKMIPIMLKIRDFGCTTDANGFSVPVEGRAFGNADLEAVISYLYSVAY
QYGFCI*
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spliced messenger RNA

>Ggra1002.t1 ID=Ggra1002.t1|Name=Ggra1002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00000027_pilon:125460..125930- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGATGATTGTTATCGACCAATGAGTGGCACTACCGTTTCAGTGTA
CGAGAAAATGTTCGTGCTGACCATCAACGACGGAATTCCTTTGCAATGTG
CCGAAGCGTATCTGTTTGTGTTCCGTCAAGCTGACTTGACCCCCATGATT
GTAAAGTATCCGAAGATCGACATTCAGTTGTCGGAGTTTCCGGGTGGTTC
TATGTCCGGAGCTGATGTTACGAGATACTGCGAGACAACACAACCTAAGA
GGAAGCGGGAAATGTTCCCTGTTACTGAGACCAAAGGAAAGTTCGTTGCC
GCAGTTAAGAAGATGATACCAATCATGCTGAAAATTAGAGACTTCGGATG
TACCACGGATGCGAATGGGTTTAGTGTACCAGTTGAGGGAAGGGCTTTCG
GCAATGCTGACCTGGAAGCTGTCATCTCATATCTGTATTCCGTGGCTTAT
CAGTATGGCTTTTGCATCTAA
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protein sequence of Ggra1002.t1

>Ggra1002.t1 ID=Ggra1002.t1|Name=Ggra1002.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=157bp
MPDDCYRPMSGTTVSVYEKMFVLTINDGIPLQCAEAYLFVFRQADLTPMI
VKYPKIDIQLSEFPGGSMSGADVTRYCETTQPKRKREMFPVTETKGKFVA
AVKKMIPIMLKIRDFGCTTDANGFSVPVEGRAFGNADLEAVISYLYSVAY
QYGFCI*
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mRNA from alignment at tig00000027_pilon:125460..125930-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1002.t1 ID=Ggra1002.t1|Name=Ggra1002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00000027_pilon:125460..125930- (Gracilaria gracilis GNS1m male)
ATGCCAGATGATTGTTATCGACCAATGAGTGGCACTACCGTTTCAGTGTA
CGAGAAAATGTTCGTGCTGACCATCAACGACGGAATTCCTTTGCAATGTG
CCGAAGCGTATCTGTTTGTGTTCCGTCAAGCTGACTTGACCCCCATGATT
GTAAAGTATCCGAAGATCGACATTCAGTTGTCGGAGTTTCCGGGTGGTTC
TATGTCCGGAGCTGATGTTACGAGATACTGCGAGACAACACAACCTAAGA
GGAAGCGGGAAATGTTCCCTGTTACTGAGACCAAAGGAAAGTTCGTTGCC
GCAGTTAAGAAGATGATACCAATCATGCTGAAAATTAGAGACTTCGGATG
TACCACGGATGCGAATGGGTTTAGTGTACCAGTTGAGGGAAGGGCTTTCG
GCAATGCTGACCTGGAAGCTGTCATCTCATATCTGTATTCCGTGGCTTAT
CAGTATGGCTTTTGCATCTAA
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Coding sequence (CDS) from alignment at tig00000027_pilon:125460..125930-

>Ggra1002.t1 ID=Ggra1002.t1|Name=Ggra1002.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00000027_pilon:125460..125930- (Gracilaria gracilis GNS1m male)
ATGCCAGATGATTGTTATCGACCAATGAGTGGCACTACCGTTTCAGTGTA
CGAGAAAATGTTCGTGCTGACCATCAACGACGGAATTCCTTTGCAATGTG
CCGAAGCGTATCTGTTTGTGTTCCGTCAAGCTGACTTGACCCCCATGATT
GTAAAGTATCCGAAGATCGACATTCAGTTGTCGGAGTTTCCGGGTGGTTC
TATGTCCGGAGCTGATGTTACGAGATACTGCGAGACAACACAACCTAAGA
GGAAGCGGGAAATGTTCCCTGTTACTGAGACCAAAGGAAAGTTCGTTGCC
GCAGTTAAGAAGATGATACCAATCATGCTGAAAATTAGAGACTTCGGATG
TACCACGGATGCGAATGGGTTTAGTGTACCAGTTGAGGGAAGGGCTTTCG
GCAATGCTGACCTGGAAGCTGTCATCTCATATCTGTATTCCGTGGCTTAT
CAGTATGGCTTTTGCATCTAA
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