Ggra1001.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1001.t1
Unique Name	Ggra1001.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	474

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:123441..124862 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1001	Ggra1001	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 123441..124862 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1001.t1.start1	Ggra1001.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 123441..123443 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1001.t1.CDS1	Ggra1001.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 123441..124862 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1001.t1.exon1	Ggra1001.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 123441..124862 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1001.t1.stop1	Ggra1001.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 124860..124862 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1001.t1	Ggra1001.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 123441..124862 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:123441..124862+
coding sequence from alignment at tig00000027_pilon:123441..124862+

mRNA sequence

>Ggra1001.t1 ID=Ggra1001.t1|Name=Ggra1001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=474bp
MSEDSSAIKSLCALPSFGTAKVLQQLYNALSTDLPHNLRSTVVPSPSSIP
DATVLRFNFDEGHSARFMVPGTVGGSVDFDWVMNRPAPLRFAMSHLAVRA
PDAPANPEHVIFMPGLNTFQQPRPGETSTEQRLQYYLRVLRTAPMAQLHS
GTSKDQGDVRLHAKRAVVLRVIVTALRPLLPDRIEPRAEGPDLIWSASQL
DYIQAALSAFNLTDTPLKARIRDILQRTKRTDAEPVVLLAYSRSSIDVRA
ALDKHVEESLEGGESQQQVESRLRRLVTIVTIGPGTSGYPDGPAYIHLAT
YQDPLARLAGVTSRDRADRAGKDAMFVNTDSPFADGSFDGHNFGSVTVQY
LALVMAANHVKGFRELWEKHMAGQIVVPENAGMLLKSLIVLTDGTEWLFS
PNDAWKGLGKDALPDPATSERVLREGMGDDYVNRVIAEFGAPKEPKNGPP
SVDGDGENNSEQPENRGWNCTLC*

spliced messenger RNA

>Ggra1001.t1 ID=Ggra1001.t1|Name=Ggra1001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000027_pilon:123441..124862+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAGGACTCGTCTGCCATCAAGTCGCTGTGCGCGCTCCCCTCCTT
CGGCACCGCCAAGGTTCTCCAGCAATTGTACAACGCCCTCAGCACCGACC
TGCCGCACAACCTCCGCTCCACCGTCGTTCCGTCGCCGTCGTCCATCCCC
GACGCCACCGTGCTTCGCTTCAACTTCGATGAGGGCCACTCCGCGCGCTT
CATGGTGCCGGGCACCGTGGGCGGCTCCGTCGACTTCGACTGGGTCATGA
ATCGTCCCGCTCCGCTGCGCTTCGCCATGTCGCACCTTGCCGTACGTGCG
CCCGACGCTCCCGCGAACCCGGAGCATGTCATCTTCATGCCTGGGCTTAA
CACATTTCAACAGCCGCGTCCCGGCGAGACTTCCACCGAGCAGCGTCTGC
AGTACTATTTGCGCGTGCTTCGCACCGCGCCCATGGCACAGTTACATTCC
GGCACTTCCAAAGACCAAGGCGATGTCCGCCTTCACGCGAAGCGCGCCGT
CGTGTTACGCGTCATAGTCACGGCGCTTCGTCCGCTACTTCCAGACCGAA
TTGAACCCAGGGCGGAGGGTCCCGATCTCATCTGGTCGGCAAGTCAGCTG
GATTACATTCAGGCCGCTCTGTCCGCGTTCAACCTCACTGACACGCCTCT
CAAGGCACGCATCCGCGACATATTGCAGCGTACCAAGCGAACGGATGCGG
AACCAGTTGTGTTGTTGGCGTATTCCCGATCGTCCATCGATGTACGCGCC
GCGCTCGACAAGCACGTGGAAGAGAGCCTCGAAGGCGGCGAGTCGCAGCA
ACAAGTTGAGAGTCGGCTCCGCAGGCTGGTGACCATTGTGACGATCGGTC
CGGGTACGTCAGGGTACCCCGATGGACCTGCCTATATCCACCTGGCTACT
TATCAGGATCCACTCGCACGTCTTGCAGGAGTCACTTCACGTGACCGCGC
AGACCGCGCGGGGAAGGATGCAATGTTCGTCAACACCGATTCGCCGTTCG
CAGACGGCTCGTTTGATGGCCACAACTTTGGGTCGGTGACAGTGCAATAC
CTTGCGCTTGTGATGGCGGCCAACCACGTGAAGGGTTTCCGTGAGCTGTG
GGAAAAGCACATGGCCGGGCAGATCGTCGTACCGGAGAACGCGGGTATGT
TGCTGAAATCGTTGATCGTGTTGACGGATGGCACCGAGTGGTTGTTCTCA
CCGAATGATGCGTGGAAGGGGCTTGGGAAGGATGCGTTACCGGATCCAGC
GACATCGGAGAGAGTTCTCAGAGAGGGCATGGGCGACGATTATGTGAACA
GAGTGATTGCTGAGTTTGGCGCGCCGAAGGAGCCGAAGAATGGGCCACCA
TCTGTGGACGGTGATGGCGAGAACAACAGCGAGCAGCCGGAGAACCGCGG
GTGGAACTGCACTTTGTGCTAG

protein sequence of Ggra1001.t1

>Ggra1001.t1 ID=Ggra1001.t1|Name=Ggra1001.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=474bp
MSEDSSAIKSLCALPSFGTAKVLQQLYNALSTDLPHNLRSTVVPSPSSIP
DATVLRFNFDEGHSARFMVPGTVGGSVDFDWVMNRPAPLRFAMSHLAVRA
PDAPANPEHVIFMPGLNTFQQPRPGETSTEQRLQYYLRVLRTAPMAQLHS
GTSKDQGDVRLHAKRAVVLRVIVTALRPLLPDRIEPRAEGPDLIWSASQL
DYIQAALSAFNLTDTPLKARIRDILQRTKRTDAEPVVLLAYSRSSIDVRA
ALDKHVEESLEGGESQQQVESRLRRLVTIVTIGPGTSGYPDGPAYIHLAT
YQDPLARLAGVTSRDRADRAGKDAMFVNTDSPFADGSFDGHNFGSVTVQY
LALVMAANHVKGFRELWEKHMAGQIVVPENAGMLLKSLIVLTDGTEWLFS
PNDAWKGLGKDALPDPATSERVLREGMGDDYVNRVIAEFGAPKEPKNGPP
SVDGDGENNSEQPENRGWNCTLC*

mRNA from alignment at tig00000027_pilon:123441..124862+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1001.t1 ID=Ggra1001.t1|Name=Ggra1001.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00000027_pilon:123441..124862+ (Gracilaria gracilis GNS1m male)
ATGTCGGAGGACTCGTCTGCCATCAAGTCGCTGTGCGCGCTCCCCTCCTT
CGGCACCGCCAAGGTTCTCCAGCAATTGTACAACGCCCTCAGCACCGACC
TGCCGCACAACCTCCGCTCCACCGTCGTTCCGTCGCCGTCGTCCATCCCC
GACGCCACCGTGCTTCGCTTCAACTTCGATGAGGGCCACTCCGCGCGCTT
CATGGTGCCGGGCACCGTGGGCGGCTCCGTCGACTTCGACTGGGTCATGA
ATCGTCCCGCTCCGCTGCGCTTCGCCATGTCGCACCTTGCCGTACGTGCG
CCCGACGCTCCCGCGAACCCGGAGCATGTCATCTTCATGCCTGGGCTTAA
CACATTTCAACAGCCGCGTCCCGGCGAGACTTCCACCGAGCAGCGTCTGC
AGTACTATTTGCGCGTGCTTCGCACCGCGCCCATGGCACAGTTACATTCC
GGCACTTCCAAAGACCAAGGCGATGTCCGCCTTCACGCGAAGCGCGCCGT
CGTGTTACGCGTCATAGTCACGGCGCTTCGTCCGCTACTTCCAGACCGAA
TTGAACCCAGGGCGGAGGGTCCCGATCTCATCTGGTCGGCAAGTCAGCTG
GATTACATTCAGGCCGCTCTGTCCGCGTTCAACCTCACTGACACGCCTCT
CAAGGCACGCATCCGCGACATATTGCAGCGTACCAAGCGAACGGATGCGG
AACCAGTTGTGTTGTTGGCGTATTCCCGATCGTCCATCGATGTACGCGCC
GCGCTCGACAAGCACGTGGAAGAGAGCCTCGAAGGCGGCGAGTCGCAGCA
ACAAGTTGAGAGTCGGCTCCGCAGGCTGGTGACCATTGTGACGATCGGTC
CGGGTACGTCAGGGTACCCCGATGGACCTGCCTATATCCACCTGGCTACT
TATCAGGATCCACTCGCACGTCTTGCAGGAGTCACTTCACGTGACCGCGC
AGACCGCGCGGGGAAGGATGCAATGTTCGTCAACACCGATTCGCCGTTCG
CAGACGGCTCGTTTGATGGCCACAACTTTGGGTCGGTGACAGTGCAATAC
CTTGCGCTTGTGATGGCGGCCAACCACGTGAAGGGTTTCCGTGAGCTGTG
GGAAAAGCACATGGCCGGGCAGATCGTCGTACCGGAGAACGCGGGTATGT
TGCTGAAATCGTTGATCGTGTTGACGGATGGCACCGAGTGGTTGTTCTCA
CCGAATGATGCGTGGAAGGGGCTTGGGAAGGATGCGTTACCGGATCCAGC
GACATCGGAGAGAGTTCTCAGAGAGGGCATGGGCGACGATTATGTGAACA
GAGTGATTGCTGAGTTTGGCGCGCCGAAGGAGCCGAAGAATGGGCCACCA
TCTGTGGACGGTGATGGCGAGAACAACAGCGAGCAGCCGGAGAACCGCGG
GTGGAACTGCACTTTGTGCTAG

Coding sequence (CDS) from alignment at tig00000027_pilon:123441..124862+

>Ggra1001.t1 ID=Ggra1001.t1|Name=Ggra1001.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00000027_pilon:123441..124862+ (Gracilaria gracilis GNS1m male)
ATGTCGGAGGACTCGTCTGCCATCAAGTCGCTGTGCGCGCTCCCCTCCTT
CGGCACCGCCAAGGTTCTCCAGCAATTGTACAACGCCCTCAGCACCGACC
TGCCGCACAACCTCCGCTCCACCGTCGTTCCGTCGCCGTCGTCCATCCCC
GACGCCACCGTGCTTCGCTTCAACTTCGATGAGGGCCACTCCGCGCGCTT
CATGGTGCCGGGCACCGTGGGCGGCTCCGTCGACTTCGACTGGGTCATGA
ATCGTCCCGCTCCGCTGCGCTTCGCCATGTCGCACCTTGCCGTACGTGCG
CCCGACGCTCCCGCGAACCCGGAGCATGTCATCTTCATGCCTGGGCTTAA
CACATTTCAACAGCCGCGTCCCGGCGAGACTTCCACCGAGCAGCGTCTGC
AGTACTATTTGCGCGTGCTTCGCACCGCGCCCATGGCACAGTTACATTCC
GGCACTTCCAAAGACCAAGGCGATGTCCGCCTTCACGCGAAGCGCGCCGT
CGTGTTACGCGTCATAGTCACGGCGCTTCGTCCGCTACTTCCAGACCGAA
TTGAACCCAGGGCGGAGGGTCCCGATCTCATCTGGTCGGCAAGTCAGCTG
GATTACATTCAGGCCGCTCTGTCCGCGTTCAACCTCACTGACACGCCTCT
CAAGGCACGCATCCGCGACATATTGCAGCGTACCAAGCGAACGGATGCGG
AACCAGTTGTGTTGTTGGCGTATTCCCGATCGTCCATCGATGTACGCGCC
GCGCTCGACAAGCACGTGGAAGAGAGCCTCGAAGGCGGCGAGTCGCAGCA
ACAAGTTGAGAGTCGGCTCCGCAGGCTGGTGACCATTGTGACGATCGGTC
CGGGTACGTCAGGGTACCCCGATGGACCTGCCTATATCCACCTGGCTACT
TATCAGGATCCACTCGCACGTCTTGCAGGAGTCACTTCACGTGACCGCGC
AGACCGCGCGGGGAAGGATGCAATGTTCGTCAACACCGATTCGCCGTTCG
CAGACGGCTCGTTTGATGGCCACAACTTTGGGTCGGTGACAGTGCAATAC
CTTGCGCTTGTGATGGCGGCCAACCACGTGAAGGGTTTCCGTGAGCTGTG
GGAAAAGCACATGGCCGGGCAGATCGTCGTACCGGAGAACGCGGGTATGT
TGCTGAAATCGTTGATCGTGTTGACGGATGGCACCGAGTGGTTGTTCTCA
CCGAATGATGCGTGGAAGGGGCTTGGGAAGGATGCGTTACCGGATCCAGC
GACATCGGAGAGAGTTCTCAGAGAGGGCATGGGCGACGATTATGTGAACA
GAGTGATTGCTGAGTTTGGCGCGCCGAAGGAGCCGAAGAATGGGCCACCA
TCTGTGGACGGTGATGGCGAGAACAACAGCGAGCAGCCGGAGAACCGCGG
GTGGAACTGCACTTTGTGCTAG