Ggra10007.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10007.t1
Unique NameGgra10007.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length640
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:43701..45824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX47076
Preferred nameFTSH1
PFAMsAAA,Peptidase_M41
Max annot lvl2759|Eukaryota
KEGG koko:K03798
KEGG ModuleM00742
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009719,GO:0009725,GO:0009735,GO:0009765,GO:0009892,GO:0009941,GO:0009987,GO:0010033,GO:0010109,GO:0010205,GO:0010206,GO:0010304,GO:0015979,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0019684,GO:0022607,GO:0030091,GO:0030163,GO:0031323,GO:0031324,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0034622,GO:0042221,GO:0042548,GO:0042623,GO:0042651,GO:0043155,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043467,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048564,GO:0050789,GO:0050794,GO:0050896,GO:0055035,GO:0065003,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1905156
Evalue6.9e-263
EggNOG OGsCOG0465@1|root,KOG0731@2759|Eukaryota
Descriptionmetalloendopeptidase activity
COG categoryO
BRITEko00000,ko00002,ko01000,ko01002,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10007Ggra10007Gracilaria gracilis GNS1m malegenetig00000222_pilon 43701..45824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10007.t1Ggra10007.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 43701..45824 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10007.t1.start1Ggra10007.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 43701..43703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10007.t1.CDS1Ggra10007.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 43701..44574 +
Ggra10007.t1.CDS2Ggra10007.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000222_pilon 44779..45824 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10007.t1.exon1Ggra10007.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 43701..44574 +
Ggra10007.t1.exon2Ggra10007.t1.exon2Gracilaria gracilis GNS1m maleexontig00000222_pilon 44779..45824 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10007.t1.intron1Ggra10007.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000222_pilon 44575..44778 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10007.t1.stop1Ggra10007.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 45822..45824 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10007.t1 ID=Ggra10007.t1|Name=Ggra10007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=640bp
MAFVSHTALPLHRPRAAKTSLRRPRMSRSSPSPSLPAILLDGKAGDRLQR
VAALLSQELNRTASLAAAAAVFAAVATNVSPVHAAADPVQMTGMRQETSA
SATRSMSSENSPAPVSNGVQDWRYSQFINAVENDQVEKVTFSADGQRLLA
VDTDGNRFKLDALPNDPDLLKTLTGHKVDVTVLPSQPESGAGDFIRSLIF
PALLFGGLFLLSRRAGGAGGGFGPMGGPMDLQRSGARVSMVPETGITFKD
VAGVDGAKLELQEVVQFLKESERFTELGAKIPRGVILEGPPGIAGGNDER
EQTLNQMLTEMDGFEGNSGVIVIAATNRADVLDNALLRPGRFDRRVVVDL
PDFNGRVSILKVHARGKPLAKDVDIEQVARRTPGFSGASLQNLLNEAAIF
TARRQKTEIGPDEVSDAIDRITIGAEKKEAMMSPERQRLVAYHEAGHAIV
GALTPDYDQVAKISIIPRGGAGGLTFFAPNEQRVDSGLYSRQFLEGQLAV
ALGGRIAEELVFGDERVTTGASNDLQRVTQVAKQMVTRFGMSPKVGQLSI
STDGGNPFLGRQMASGSPQMSSVLKAEIDEEVRRLVNVAYTRAKTLLTTN
RHLLDALAKLLVEKETVSAEEFQRLIAENKIEMMPYAIY*
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spliced messenger RNA

>Ggra10007.t1 ID=Ggra10007.t1|Name=Ggra10007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1920bp|location=Sequence derived from alignment at tig00000222_pilon:43701..45824+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCGTTTCACACACGGCGTTACCGCTACATCGTCCTCGAGCAGC
GAAAACCAGTCTTCGTCGCCCGCGTATGAGTCGCTCATCGCCATCACCTT
CCCTTCCAGCAATTCTGCTTGACGGCAAGGCTGGCGACCGACTCCAACGA
GTAGCTGCCTTGCTTTCGCAAGAGCTGAACCGCACCGCATCATTAGCTGC
AGCTGCCGCCGTCTTCGCCGCTGTCGCCACCAATGTTTCCCCGGTTCACG
CTGCGGCTGATCCCGTGCAGATGACGGGCATGCGACAAGAAACAAGTGCT
TCTGCCACCCGTTCCATGTCGTCAGAGAACTCCCCGGCTCCGGTTTCTAA
CGGCGTTCAGGACTGGCGTTATTCACAGTTCATTAACGCCGTAGAGAATG
ACCAGGTTGAGAAAGTCACCTTTTCAGCCGATGGGCAACGTCTTCTTGCC
GTTGATACTGATGGAAATCGTTTCAAGCTCGATGCGTTGCCAAACGACCC
GGACTTGTTGAAGACGCTTACTGGTCATAAGGTCGACGTGACGGTTCTTC
CTTCTCAACCCGAGTCTGGTGCCGGTGATTTCATCCGCTCACTTATATTC
CCAGCTCTGCTATTCGGTGGTTTGTTCCTGCTTTCTCGTCGCGCAGGTGG
TGCGGGCGGTGGCTTCGGACCGATGGGCGGGCCGATGGATTTGCAGCGAT
CTGGGGCTCGCGTTTCTATGGTTCCTGAGACCGGGATTACTTTCAAAGAC
GTCGCAGGCGTTGACGGCGCCAAGCTGGAACTCCAAGAAGTCGTCCAGTT
CCTCAAGGAATCTGAACGCTTCACGGAGCTTGGAGCTAAGATTccaaggg
gcgtcatattagagggacccccagGTATTGCTGGAGGAAATGACGAGCGT
GAACAGACTCTCAATCAGATGCTTACTGAAATGGATGGCTTCGAAGGCAA
TTCAGGAGTCATTGTAATTGCAGCGACGAACAGGGCCGATGTCCTTGATA
ACGCTCTTCTTCGACCAGGTCGTTTTGATCGTCGTGTAGTCGTAGACCTT
CCAGACTTCAACGGGCGTGTATCCATTCTTAAGGTTCATGCGCGCGGTAA
GCCACTGGCGAAGGACGTCGATATTGAGCAGGTTGCGCGTCGTACTCCTG
GGTTCTCTGGGGCGTCCCTGCAGAACCTTCTCAACGAGGCCGCCATCTTC
ACTGCTCGTCGCCAGAAGACTGAGATTGGTCCTGATGAAGTCAGTGACGC
CATCGACCGTATCACTATTGGAGCTGAAAAGAAGGAAGCTATGATGTCAC
CGGAGCGTCAGAGACTCGTTGCGTACCATGAAGCCGGTCACGCGATAGTT
GGCGCTTTGACTCCAGACTACGACCAAGTTGCAAAGATTAGCATCATTCC
CAGAGGTGGTGCTGGTGGATTAACGTTCTTCGCGCCAAACGAGCAAAGAG
TCGACTCCGGTTTGTACTCACGACAGTTCCTTGAAGGTCAGCTTGCAGTT
GCTCTCGGTGGACGTATTGCCGAGGAACTCGTTTTTGGAGACGAGAGGGT
TACCACTGGTGCCTCTAATGATCTGCAAAGAGTTACTCAAGTTGCGAAAC
AGATGGTTACAAGGTTCGGCATGTCGCCGAAGGTTGGCCAATTGTCGATC
AGCACTGACGGCGGAAATCCGTTCCTCGGACGTCAAATGGCGAGCGGTTC
GCCACAGATGAGCTCAGTTCTCAAAGCTGAAATTGATGAGGAGGTACGAC
GTCTTGTAAACGTCGCGTACACAAGGGCGAAGACTTTGTTGACTACCAAC
AGGCACTTGCTCGATGCTCTGGCTAAGCTGTTGGTTGAGAAAGAGACTGT
GTCGGCTGAAGAATTCCAGAGATTGATTGCTGAGAATAAGATCGAAATGA
TGCCCTATGCGATTTACTAG
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protein sequence of Ggra10007.t1

>Ggra10007.t1 ID=Ggra10007.t1|Name=Ggra10007.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=640bp
MAFVSHTALPLHRPRAAKTSLRRPRMSRSSPSPSLPAILLDGKAGDRLQR
VAALLSQELNRTASLAAAAAVFAAVATNVSPVHAAADPVQMTGMRQETSA
SATRSMSSENSPAPVSNGVQDWRYSQFINAVENDQVEKVTFSADGQRLLA
VDTDGNRFKLDALPNDPDLLKTLTGHKVDVTVLPSQPESGAGDFIRSLIF
PALLFGGLFLLSRRAGGAGGGFGPMGGPMDLQRSGARVSMVPETGITFKD
VAGVDGAKLELQEVVQFLKESERFTELGAKIPRGVILEGPPGIAGGNDER
EQTLNQMLTEMDGFEGNSGVIVIAATNRADVLDNALLRPGRFDRRVVVDL
PDFNGRVSILKVHARGKPLAKDVDIEQVARRTPGFSGASLQNLLNEAAIF
TARRQKTEIGPDEVSDAIDRITIGAEKKEAMMSPERQRLVAYHEAGHAIV
GALTPDYDQVAKISIIPRGGAGGLTFFAPNEQRVDSGLYSRQFLEGQLAV
ALGGRIAEELVFGDERVTTGASNDLQRVTQVAKQMVTRFGMSPKVGQLSI
STDGGNPFLGRQMASGSPQMSSVLKAEIDEEVRRLVNVAYTRAKTLLTTN
RHLLDALAKLLVEKETVSAEEFQRLIAENKIEMMPYAIY*
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mRNA from alignment at tig00000222_pilon:43701..45824+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10007.t1 ID=Ggra10007.t1|Name=Ggra10007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2124bp|location=Sequence derived from alignment at tig00000222_pilon:43701..45824+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCGTTTCACACACGGCGTTACCGCTACATCGTCCTCGAGCAGC
GAAAACCAGTCTTCGTCGCCCGCGTATGAGTCGCTCATCGCCATCACCTT
CCCTTCCAGCAATTCTGCTTGACGGCAAGGCTGGCGACCGACTCCAACGA
GTAGCTGCCTTGCTTTCGCAAGAGCTGAACCGCACCGCATCATTAGCTGC
AGCTGCCGCCGTCTTCGCCGCTGTCGCCACCAATGTTTCCCCGGTTCACG
CTGCGGCTGATCCCGTGCAGATGACGGGCATGCGACAAGAAACAAGTGCT
TCTGCCACCCGTTCCATGTCGTCAGAGAACTCCCCGGCTCCGGTTTCTAA
CGGCGTTCAGGACTGGCGTTATTCACAGTTCATTAACGCCGTAGAGAATG
ACCAGGTTGAGAAAGTCACCTTTTCAGCCGATGGGCAACGTCTTCTTGCC
GTTGATACTGATGGAAATCGTTTCAAGCTCGATGCGTTGCCAAACGACCC
GGACTTGTTGAAGACGCTTACTGGTCATAAGGTCGACGTGACGGTTCTTC
CTTCTCAACCCGAGTCTGGTGCCGGTGATTTCATCCGCTCACTTATATTC
CCAGCTCTGCTATTCGGTGGTTTGTTCCTGCTTTCTCGTCGCGCAGGTGG
TGCGGGCGGTGGCTTCGGACCGATGGGCGGGCCGATGGATTTGCAGCGAT
CTGGGGCTCGCGTTTCTATGGTTCCTGAGACCGGGATTACTTTCAAAGAC
GTCGCAGGCGTTGACGGCGCCAAGCTGGAACTCCAAGAAGTCGTCCAGTT
CCTCAAGGAATCTGAACGCTTCACGGAGCTTGGAGCTAAGATTccaaggg
gcgtcatattagagggacccccaggtactggaaagactcttctcgctcgt
gcagtcgcgggagaagccggtgtcccgtttttctctatttcgggctctga
gtttgttgaaatgttcgtcggcgtcggtgcttctcgtgtcagggatctgt
tcgcgaacgccaaaaagaacgcaccatgtatcatctttattgatgaaatt
gatgctgttggtCGTCAGCGTGGAGCAGGTATTGCTGGAGGAAATGACGA
GCGTGAACAGACTCTCAATCAGATGCTTACTGAAATGGATGGCTTCGAAG
GCAATTCAGGAGTCATTGTAATTGCAGCGACGAACAGGGCCGATGTCCTT
GATAACGCTCTTCTTCGACCAGGTCGTTTTGATCGTCGTGTAGTCGTAGA
CCTTCCAGACTTCAACGGGCGTGTATCCATTCTTAAGGTTCATGCGCGCG
GTAAGCCACTGGCGAAGGACGTCGATATTGAGCAGGTTGCGCGTCGTACT
CCTGGGTTCTCTGGGGCGTCCCTGCAGAACCTTCTCAACGAGGCCGCCAT
CTTCACTGCTCGTCGCCAGAAGACTGAGATTGGTCCTGATGAAGTCAGTG
ACGCCATCGACCGTATCACTATTGGAGCTGAAAAGAAGGAAGCTATGATG
TCACCGGAGCGTCAGAGACTCGTTGCGTACCATGAAGCCGGTCACGCGAT
AGTTGGCGCTTTGACTCCAGACTACGACCAAGTTGCAAAGATTAGCATCA
TTCCCAGAGGTGGTGCTGGTGGATTAACGTTCTTCGCGCCAAACGAGCAA
AGAGTCGACTCCGGTTTGTACTCACGACAGTTCCTTGAAGGTCAGCTTGC
AGTTGCTCTCGGTGGACGTATTGCCGAGGAACTCGTTTTTGGAGACGAGA
GGGTTACCACTGGTGCCTCTAATGATCTGCAAAGAGTTACTCAAGTTGCG
AAACAGATGGTTACAAGGTTCGGCATGTCGCCGAAGGTTGGCCAATTGTC
GATCAGCACTGACGGCGGAAATCCGTTCCTCGGACGTCAAATGGCGAGCG
GTTCGCCACAGATGAGCTCAGTTCTCAAAGCTGAAATTGATGAGGAGGTA
CGACGTCTTGTAAACGTCGCGTACACAAGGGCGAAGACTTTGTTGACTAC
CAACAGGCACTTGCTCGATGCTCTGGCTAAGCTGTTGGTTGAGAAAGAGA
CTGTGTCGGCTGAAGAATTCCAGAGATTGATTGCTGAGAATAAGATCGAA
ATGATGCCCTATGCGATTTACTAG
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Coding sequence (CDS) from alignment at tig00000222_pilon:43701..45824+

>Ggra10007.t1 ID=Ggra10007.t1|Name=Ggra10007.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1920bp|location=Sequence derived from alignment at tig00000222_pilon:43701..45824+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCGTTTCACACACGGCGTTACCGCTACATCGTCCTCGAGCAGC
GAAAACCAGTCTTCGTCGCCCGCGTATGAGTCGCTCATCGCCATCACCTT
CCCTTCCAGCAATTCTGCTTGACGGCAAGGCTGGCGACCGACTCCAACGA
GTAGCTGCCTTGCTTTCGCAAGAGCTGAACCGCACCGCATCATTAGCTGC
AGCTGCCGCCGTCTTCGCCGCTGTCGCCACCAATGTTTCCCCGGTTCACG
CTGCGGCTGATCCCGTGCAGATGACGGGCATGCGACAAGAAACAAGTGCT
TCTGCCACCCGTTCCATGTCGTCAGAGAACTCCCCGGCTCCGGTTTCTAA
CGGCGTTCAGGACTGGCGTTATTCACAGTTCATTAACGCCGTAGAGAATG
ACCAGGTTGAGAAAGTCACCTTTTCAGCCGATGGGCAACGTCTTCTTGCC
GTTGATACTGATGGAAATCGTTTCAAGCTCGATGCGTTGCCAAACGACCC
GGACTTGTTGAAGACGCTTACTGGTCATAAGGTCGACGTGACGGTTCTTC
CTTCTCAACCCGAGTCTGGTGCCGGTGATTTCATCCGCTCACTTATATTC
CCAGCTCTGCTATTCGGTGGTTTGTTCCTGCTTTCTCGTCGCGCAGGTGG
TGCGGGCGGTGGCTTCGGACCGATGGGCGGGCCGATGGATTTGCAGCGAT
CTGGGGCTCGCGTTTCTATGGTTCCTGAGACCGGGATTACTTTCAAAGAC
GTCGCAGGCGTTGACGGCGCCAAGCTGGAACTCCAAGAAGTCGTCCAGTT
CCTCAAGGAATCTGAACGCTTCACGGAGCTTGGAGCTAAGATTccaaggg
gcgtcatattagagggacccccagGTATTGCTGGAGGAAATGACGAGCGT
GAACAGACTCTCAATCAGATGCTTACTGAAATGGATGGCTTCGAAGGCAA
TTCAGGAGTCATTGTAATTGCAGCGACGAACAGGGCCGATGTCCTTGATA
ACGCTCTTCTTCGACCAGGTCGTTTTGATCGTCGTGTAGTCGTAGACCTT
CCAGACTTCAACGGGCGTGTATCCATTCTTAAGGTTCATGCGCGCGGTAA
GCCACTGGCGAAGGACGTCGATATTGAGCAGGTTGCGCGTCGTACTCCTG
GGTTCTCTGGGGCGTCCCTGCAGAACCTTCTCAACGAGGCCGCCATCTTC
ACTGCTCGTCGCCAGAAGACTGAGATTGGTCCTGATGAAGTCAGTGACGC
CATCGACCGTATCACTATTGGAGCTGAAAAGAAGGAAGCTATGATGTCAC
CGGAGCGTCAGAGACTCGTTGCGTACCATGAAGCCGGTCACGCGATAGTT
GGCGCTTTGACTCCAGACTACGACCAAGTTGCAAAGATTAGCATCATTCC
CAGAGGTGGTGCTGGTGGATTAACGTTCTTCGCGCCAAACGAGCAAAGAG
TCGACTCCGGTTTGTACTCACGACAGTTCCTTGAAGGTCAGCTTGCAGTT
GCTCTCGGTGGACGTATTGCCGAGGAACTCGTTTTTGGAGACGAGAGGGT
TACCACTGGTGCCTCTAATGATCTGCAAAGAGTTACTCAAGTTGCGAAAC
AGATGGTTACAAGGTTCGGCATGTCGCCGAAGGTTGGCCAATTGTCGATC
AGCACTGACGGCGGAAATCCGTTCCTCGGACGTCAAATGGCGAGCGGTTC
GCCACAGATGAGCTCAGTTCTCAAAGCTGAAATTGATGAGGAGGTACGAC
GTCTTGTAAACGTCGCGTACACAAGGGCGAAGACTTTGTTGACTACCAAC
AGGCACTTGCTCGATGCTCTGGCTAAGCTGTTGGTTGAGAAAGAGACTGT
GTCGGCTGAAGAATTCCAGAGATTGATTGCTGAGAATAAGATCGAAATGA
TGCCCTATGCGATTTACTAG
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