Ggra10002.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10002.t1
Unique NameGgra10002.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:153821..154711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog251221.35211874
PFAMsAbhydrolase_1
Max annot lvl1117|Cyanobacteria
Evalue2.99e-22
EggNOG OGsCOG0596@1|root,COG0596@2|Bacteria,1G05K@1117|Cyanobacteria
DescriptionAlpha beta hydrolase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10002Ggra10002Gracilaria gracilis GNS1m malegenetig00000213_pilon 153821..154711 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10002.t1.start1Ggra10002.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 153821..153823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10002.t1.CDS1Ggra10002.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 153821..154711 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10002.t1.exon1Ggra10002.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 153821..154711 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10002.t1.stop1Ggra10002.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 154709..154711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10002.t1Ggra10002.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 153821..154711 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10002.t1 ID=Ggra10002.t1|Name=Ggra10002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp
MHVLYHAPAELTHAPCVVFEAGANSWSPVWEEVCARVGAMARVFRYDRAG
FGFSDAPAPARERSVSAVVSDLHTALLSAGARPPYVLVAHSLGALYANVL
VKMLRPADVCGVVYVDGASPQTVRLLERVIPHRTPPYWLANALARAGLLR
LLAPLLLRQYTAAFRGRLRAEARSTWATGDWLMSYTSEWAAALRESKAAA
RQHDADDGALLHFPPGWLGDTPIAVLVPDVYERTRGKRYVGALQRALLRY
SSDARLVAVTDCGHFVQLERPDAVAAAVCAVIERARHKRLIASDSQ*
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spliced messenger RNA

>Ggra10002.t1 ID=Ggra10002.t1|Name=Ggra10002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000213_pilon:153821..154711+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTGCTGTACCACGCGCCGGCGGAGCTGACGCACGCGCCGTGCGT
GGTGTTCGAGGCGGGCGCCAACAGCTGGTCGCCCGTATGGGAGGAGGTGT
GCGCGCGCGTGGGCGCCATGGCGCGCGTGTTCCGCTACGACCGCGCGGGT
TTCGGCTTCTCGGACGCGCCGGCGCCCGCGCGCGAGCGCTCGGTGAGCGC
GGTGGTGAGCGACCTACACACGGCGCTGCTGAGCGCGGGCGCGCGGCCGC
CGTACGTGCTGGTGGCGCACTCGCTGGGCGCGCTGTACGCCAACGTGCTG
GTGAAGATGCTGCGGCCGGCCGATGTGTGCGGGGTGGTGTACGTGGACGG
CGCGTCGCCGCAGACGGTGCGACTGCTGGAGCGCGTCATCCCGCACCGCA
CGCCGCCCTACTGGCTGGCCAACGCGCTGGCGCGCGCGGGgctgctgcgg
ctgctggcgccgctgctgctgcGCCAGTACACGGCGGCGTTCCGCGGGCG
GCTGCGCGCCGAGGCGCGCTCCACCTGGGCCACGGGCGACTGGCTCATGT
CGTACACCTCCGAGTGGGCGGCGGCGCTTCGCGAGAGCAAGGCGGCCGCG
CGCCAGCACGACGCCGACGACGGTGCGCTGCTGCACTTCCCGCCGGGCTG
GCTGGGCGACACGCCCATCGCCGTGCTGGTGCCGGATGTGTACGAGCGCA
CGCGCGGTAAGCGATACGTCGGCGCGCTGCAGCGCGCGCTGCTGCGCTAC
TCGTCCGACGCGCGCCTCGTCGCCGTCACCGACTGCGGCCACTTTGTGCA
GCTGGAGcgccccgacgccgtcgccgccgccgTGTGCGCCGTCATTGAGC
GCGCGCGCCACAAGCGCCTCATCGCCTCCGACTCACAGTAA
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protein sequence of Ggra10002.t1

>Ggra10002.t1 ID=Ggra10002.t1|Name=Ggra10002.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MHVLYHAPAELTHAPCVVFEAGANSWSPVWEEVCARVGAMARVFRYDRAG
FGFSDAPAPARERSVSAVVSDLHTALLSAGARPPYVLVAHSLGALYANVL
VKMLRPADVCGVVYVDGASPQTVRLLERVIPHRTPPYWLANALARAGLLR
LLAPLLLRQYTAAFRGRLRAEARSTWATGDWLMSYTSEWAAALRESKAAA
RQHDADDGALLHFPPGWLGDTPIAVLVPDVYERTRGKRYVGALQRALLRY
SSDARLVAVTDCGHFVQLERPDAVAAAVCAVIERARHKRLIASDSQ*
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mRNA from alignment at tig00000213_pilon:153821..154711+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10002.t1 ID=Ggra10002.t1|Name=Ggra10002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000213_pilon:153821..154711+ (Gracilaria gracilis GNS1m male)
ATGCACGTGCTGTACCACGCGCCGGCGGAGCTGACGCACGCGCCGTGCGT
GGTGTTCGAGGCGGGCGCCAACAGCTGGTCGCCCGTATGGGAGGAGGTGT
GCGCGCGCGTGGGCGCCATGGCGCGCGTGTTCCGCTACGACCGCGCGGGT
TTCGGCTTCTCGGACGCGCCGGCGCCCGCGCGCGAGCGCTCGGTGAGCGC
GGTGGTGAGCGACCTACACACGGCGCTGCTGAGCGCGGGCGCGCGGCCGC
CGTACGTGCTGGTGGCGCACTCGCTGGGCGCGCTGTACGCCAACGTGCTG
GTGAAGATGCTGCGGCCGGCCGATGTGTGCGGGGTGGTGTACGTGGACGG
CGCGTCGCCGCAGACGGTGCGACTGCTGGAGCGCGTCATCCCGCACCGCA
CGCCGCCCTACTGGCTGGCCAACGCGCTGGCGCGCGCGGGgctgctgcgg
ctgctggcgccgctgctgctgcGCCAGTACACGGCGGCGTTCCGCGGGCG
GCTGCGCGCCGAGGCGCGCTCCACCTGGGCCACGGGCGACTGGCTCATGT
CGTACACCTCCGAGTGGGCGGCGGCGCTTCGCGAGAGCAAGGCGGCCGCG
CGCCAGCACGACGCCGACGACGGTGCGCTGCTGCACTTCCCGCCGGGCTG
GCTGGGCGACACGCCCATCGCCGTGCTGGTGCCGGATGTGTACGAGCGCA
CGCGCGGTAAGCGATACGTCGGCGCGCTGCAGCGCGCGCTGCTGCGCTAC
TCGTCCGACGCGCGCCTCGTCGCCGTCACCGACTGCGGCCACTTTGTGCA
GCTGGAGcgccccgacgccgtcgccgccgccgTGTGCGCCGTCATTGAGC
GCGCGCGCCACAAGCGCCTCATCGCCTCCGACTCACAGTAA
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Coding sequence (CDS) from alignment at tig00000213_pilon:153821..154711+

>Ggra10002.t1 ID=Ggra10002.t1|Name=Ggra10002.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00000213_pilon:153821..154711+ (Gracilaria gracilis GNS1m male)
ATGCACGTGCTGTACCACGCGCCGGCGGAGCTGACGCACGCGCCGTGCGT
GGTGTTCGAGGCGGGCGCCAACAGCTGGTCGCCCGTATGGGAGGAGGTGT
GCGCGCGCGTGGGCGCCATGGCGCGCGTGTTCCGCTACGACCGCGCGGGT
TTCGGCTTCTCGGACGCGCCGGCGCCCGCGCGCGAGCGCTCGGTGAGCGC
GGTGGTGAGCGACCTACACACGGCGCTGCTGAGCGCGGGCGCGCGGCCGC
CGTACGTGCTGGTGGCGCACTCGCTGGGCGCGCTGTACGCCAACGTGCTG
GTGAAGATGCTGCGGCCGGCCGATGTGTGCGGGGTGGTGTACGTGGACGG
CGCGTCGCCGCAGACGGTGCGACTGCTGGAGCGCGTCATCCCGCACCGCA
CGCCGCCCTACTGGCTGGCCAACGCGCTGGCGCGCGCGGGgctgctgcgg
ctgctggcgccgctgctgctgcGCCAGTACACGGCGGCGTTCCGCGGGCG
GCTGCGCGCCGAGGCGCGCTCCACCTGGGCCACGGGCGACTGGCTCATGT
CGTACACCTCCGAGTGGGCGGCGGCGCTTCGCGAGAGCAAGGCGGCCGCG
CGCCAGCACGACGCCGACGACGGTGCGCTGCTGCACTTCCCGCCGGGCTG
GCTGGGCGACACGCCCATCGCCGTGCTGGTGCCGGATGTGTACGAGCGCA
CGCGCGGTAAGCGATACGTCGGCGCGCTGCAGCGCGCGCTGCTGCGCTAC
TCGTCCGACGCGCGCCTCGTCGCCGTCACCGACTGCGGCCACTTTGTGCA
GCTGGAGcgccccgacgccgtcgccgccgccgTGTGCGCCGTCATTGAGC
GCGCGCGCCACAAGCGCCTCATCGCCTCCGACTCACAGTAA
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