Ggra10.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10.t1
Unique NameGgra10.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length9
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000154_piloncontigtig00000154_pilon:26251..26355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10Ggra10Gracilaria gracilis GNS1m malegenetig00000154_pilon 26251..26355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10.t1Ggra10.t1Gracilaria gracilis GNS1m malepolypeptidetig00000154_pilon 26251..26355 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10.t1.stop1Ggra10.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000154_pilon 26251..26253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10.t1.CDS1Ggra10.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000154_pilon 26251..26267 -
Ggra10.t1.CDS2Ggra10.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000154_pilon 26346..26355 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10.t1.exon1Ggra10.t1.exon1Gracilaria gracilis GNS1m maleexontig00000154_pilon 26251..26267 -
Ggra10.t1.exon2Ggra10.t1.exon2Gracilaria gracilis GNS1m maleexontig00000154_pilon 26346..26355 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10.t1.intron1Ggra10.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000154_pilon 26268..26345 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10.t1 ID=Ggra10.t1|Name=Ggra10.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=9bp
HQEAPYSI*
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spliced messenger RNA

>Ggra10.t1 ID=Ggra10.t1|Name=Ggra10.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=27bp|location=Sequence derived from alignment at tig00000154_pilon:26251..26355- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
CATCAAGAAGCGCCATACTCAATTTAG
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protein sequence of Ggra10.t1

>Ggra10.t1 ID=Ggra10.t1|Name=Ggra10.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=9bp
HQEAPYSI*
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mRNA from alignment at tig00000154_pilon:26251..26355-

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10.t1 ID=Ggra10.t1|Name=Ggra10.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=105bp|location=Sequence derived from alignment at tig00000154_pilon:26251..26355- (Gracilaria gracilis GNS1m male)
CATCAAGAAGGTACGTAAACGCAACTTCAGCCATACCAAACCTTCTCTGC
GCCCACATTCTAAACTGCCCTTCCAATTGCACCCGTAGCGCCATACTCAA
TTTAG
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Coding sequence (CDS) from alignment at tig00000154_pilon:26251..26355-

>Ggra10.t1 ID=Ggra10.t1|Name=Ggra10.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=27bp|location=Sequence derived from alignment at tig00000154_pilon:26251..26355- (Gracilaria gracilis GNS1m male)
CATCAAGAAGCGCCATACTCAATTTAG
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