Gchil6947.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6947.t1
Unique NameGchil6947.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004398_piloncontigtig00004398_pilon:218507..219175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704418.1
PFAMsFAD_syn
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0003919,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006732,GO:0006747,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009507,GO:0009536,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0042726,GO:0042727,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046443,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0070566,GO:0071704,GO:0072387,GO:0072388,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue9.56e-27
EggNOG OGsCOG0196@1|root,2QVVU@2759|Eukaryota
DescriptionFAD biosynthetic process
COG categoryH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6947Gchil6947Gracilaria chilensis NLEC103_M9 malegenetig00004398_pilon 218507..219175 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6947.t1.stop1Gchil6947.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004398_pilon 218507..218509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6947.t1.CDS1Gchil6947.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004398_pilon 218507..219175 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6947.t1.exon1Gchil6947.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004398_pilon 218507..219175 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6947.t1.start1Gchil6947.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004398_pilon 219173..219175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6947.t1Gchil6947.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004398_pilon 218507..219175 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6947.t1 ID=Gchil6947.t1|Name=Gchil6947.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=223bp
MAARLKWPPRAPVAAPSDRPRILQSWCHAFSRPIRTKLLPFHSVADMSPR
AFLHLLQRDLGAHAIVCGPDWRFGKGARGDVHVLAAECERLQLQLRVTDA
LRVAGGVASSSRVRAALRAGDVALVALLLGRLHRVVGIVLRVCARGEVLC
GAFVNQLPAAGLYDAVVRVMGRSEPLHANVQVRASEQADGNGDEEHTVVL
FESEALYCEQCEVYMDFVRRVQ*
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spliced messenger RNA

>Gchil6947.t1 ID=Gchil6947.t1|Name=Gchil6947.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00004398_pilon:218507..219175- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGCGGCTCAAGTGGCCGCCGCGCGCGCCCGTGGCCGCCCCGTC
CGACCGCCCTCGCATCCTACAGTCGTGGTGCCACGCCTTCTCTCGACCCA
TCCGCACCAAGCTCTTACCGTTCCACTCGGTGGCCGACATGTCGCCGCGC
GCCTTCCTGCACCTTTTGCAGCGTGATCTCGGCGCCCACGCCATCGTATG
CGGCCCGGATTGGCGATTCGGCAAGGGTGCGCGCGGCGATGTGCACGTAT
TGGCTGCCGAGTGCGAGCGTTTGCAACTGCAACTGCGCGTCACGGACGCG
CTGCGCGTGGCGGGTGGTGTGGCAAGTTCGTCGCGTGTGCGCGCCGCCTT
GCGCGCCGGTGACGTGGCGCTGGTTGCGCTCTTGTTGGGGCGACTTCACC
GCGTCGTGGGCATTGTGCTGCGCGTGTGCGCGCGCGGTGAGGTGTTGTGT
GGCGCCTTTGTGAACCAGTTACCGGCCGCGGGGCTGTACGATGCCGTGGT
GCGCGTCATGGGACGTAGCGAGCCGCTGCATGCCAACGTGCAGGTGCGCG
CGTCGGAACAAGCTGATGGCAACGGCGATGAAGAGCATACGGTGGTGCTG
TTTGAAAGCGAGGCGCTTTATTGCGAGCAGTGCGAGGTGTACATGGACTT
TGTGCGACGCGTGCAATAG
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protein sequence of Gchil6947.t1

>Gchil6947.t1 ID=Gchil6947.t1|Name=Gchil6947.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=223bp
MAARLKWPPRAPVAAPSDRPRILQSWCHAFSRPIRTKLLPFHSVADMSPR
AFLHLLQRDLGAHAIVCGPDWRFGKGARGDVHVLAAECERLQLQLRVTDA
LRVAGGVASSSRVRAALRAGDVALVALLLGRLHRVVGIVLRVCARGEVLC
GAFVNQLPAAGLYDAVVRVMGRSEPLHANVQVRASEQADGNGDEEHTVVL
FESEALYCEQCEVYMDFVRRVQ*
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mRNA from alignment at tig00004398_pilon:218507..219175-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6947.t1 ID=Gchil6947.t1|Name=Gchil6947.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00004398_pilon:218507..219175- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCGCGGCTCAAGTGGCCGCCGCGCGCGCCCGTGGCCGCCCCGTC
CGACCGCCCTCGCATCCTACAGTCGTGGTGCCACGCCTTCTCTCGACCCA
TCCGCACCAAGCTCTTACCGTTCCACTCGGTGGCCGACATGTCGCCGCGC
GCCTTCCTGCACCTTTTGCAGCGTGATCTCGGCGCCCACGCCATCGTATG
CGGCCCGGATTGGCGATTCGGCAAGGGTGCGCGCGGCGATGTGCACGTAT
TGGCTGCCGAGTGCGAGCGTTTGCAACTGCAACTGCGCGTCACGGACGCG
CTGCGCGTGGCGGGTGGTGTGGCAAGTTCGTCGCGTGTGCGCGCCGCCTT
GCGCGCCGGTGACGTGGCGCTGGTTGCGCTCTTGTTGGGGCGACTTCACC
GCGTCGTGGGCATTGTGCTGCGCGTGTGCGCGCGCGGTGAGGTGTTGTGT
GGCGCCTTTGTGAACCAGTTACCGGCCGCGGGGCTGTACGATGCCGTGGT
GCGCGTCATGGGACGTAGCGAGCCGCTGCATGCCAACGTGCAGGTGCGCG
CGTCGGAACAAGCTGATGGCAACGGCGATGAAGAGCATACGGTGGTGCTG
TTTGAAAGCGAGGCGCTTTATTGCGAGCAGTGCGAGGTGTACATGGACTT
TGTGCGACGCGTGCAATAG
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Coding sequence (CDS) from alignment at tig00004398_pilon:218507..219175-

>Gchil6947.t1 ID=Gchil6947.t1|Name=Gchil6947.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=669bp|location=Sequence derived from alignment at tig00004398_pilon:218507..219175- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCGCGGCTCAAGTGGCCGCCGCGCGCGCCCGTGGCCGCCCCGTC
CGACCGCCCTCGCATCCTACAGTCGTGGTGCCACGCCTTCTCTCGACCCA
TCCGCACCAAGCTCTTACCGTTCCACTCGGTGGCCGACATGTCGCCGCGC
GCCTTCCTGCACCTTTTGCAGCGTGATCTCGGCGCCCACGCCATCGTATG
CGGCCCGGATTGGCGATTCGGCAAGGGTGCGCGCGGCGATGTGCACGTAT
TGGCTGCCGAGTGCGAGCGTTTGCAACTGCAACTGCGCGTCACGGACGCG
CTGCGCGTGGCGGGTGGTGTGGCAAGTTCGTCGCGTGTGCGCGCCGCCTT
GCGCGCCGGTGACGTGGCGCTGGTTGCGCTCTTGTTGGGGCGACTTCACC
GCGTCGTGGGCATTGTGCTGCGCGTGTGCGCGCGCGGTGAGGTGTTGTGT
GGCGCCTTTGTGAACCAGTTACCGGCCGCGGGGCTGTACGATGCCGTGGT
GCGCGTCATGGGACGTAGCGAGCCGCTGCATGCCAACGTGCAGGTGCGCG
CGTCGGAACAAGCTGATGGCAACGGCGATGAAGAGCATACGGTGGTGCTG
TTTGAAAGCGAGGCGCTTTATTGCGAGCAGTGCGAGGTGTACATGGACTT
TGTGCGACGCGTGCAATAG
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