Gchil3769.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3769.t1
Unique Name	Gchil3769.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	409

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:218161..219387 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX48763
PFAMs	S1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02357
Evalue	1.34e-32
EggNOG OGs	COG0264@1\|root,KOG1071@2759\|Eukaryota
Description	translation elongation factor activity
COG category	J
BRITE	ko00000,ko03012,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3769	Gchil3769	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 218161..219387 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3769.t1.start1	Gchil3769.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 218161..218163 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3769.t1.CDS1	Gchil3769.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 218161..219387 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3769.t1.exon1	Gchil3769.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 218161..219387 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3769.t1.stop1	Gchil3769.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 219385..219387 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3769.t1	Gchil3769.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 218161..219387 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:218161..219387+
coding sequence from alignment at tig00000010_pilon:218161..219387+

mRNA sequence

>Gchil3769.t1 ID=Gchil3769.t1|Name=Gchil3769.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=409bp
MAPFAFAVHVAATTLRFSSFTSSSSSSSSSLCTRVPLRIALRPAERYVTL
RRVTACVQPPPSADAQHELPTPPHNEPDHAQPQIHPEAVASDTLATAPAE
AAAPAEAAAPAEAAAPAEAAAPAEAAASPEAHTQTGGAQVEAEEQQQQQQ
QQQQRRRRRRTRQRRDVTITLEEMKAGMELEGVVKNVTEYGAFIGDTGAP
TDGLLHVSQLGDGFIENVADVVKIGDKVKVRVLSVDIDKGNFSLTMKSAE
QLGSGESRREASKEAAANRKRELNKKWDSFTYDDKVYVDAKVVSLTDFGA
FCRLVDADGNTQDAPTDGLIHISEVSNERVQSVASVLSTGQNVKVRIVGA
DRKRNRISLSMKDPSAASSEHRHQTASAEDIAEAEKNQPQFKTAFQLAFE
KAETAISQ*

spliced messenger RNA

>Gchil3769.t1 ID=Gchil3769.t1|Name=Gchil3769.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000010_pilon:218161..219387+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGTTTGCTTTCGCCGTTCATGTCGCCGCAACAACGCTTCGATT
TTCGTCTTTTACAtcttcttcttcttcttcttcttcttcGTTGTGCACGC
GTGTTCCGCTTCGCATCGCACTTCGCCCCGCCGAGCGCTACGTCACCCTC
AGACGTGTTACCGCTTGTGTTCAGCCACCACCGTCTGCAGACGCTCAACA
CGAGCTCCCCACCCCGCCGCACAATGAGCCTGACCATGCTCAGCCGCAGA
TCCACCCCGAAGCCGTCGCATCGGACACGCTCGCCACTGCACcggctgaa
gcggctgcaccggctgaagcggctgcaccggctgaagcggctgcaccggc
tgaagcggctgcaccggctgaagcggctgCATCGCCCGAAGCTCACACTC
AAACTGGTGGGGCTCAAGTCGAAGCCGAGGagcagcagcagcaacagcag
cagcagcagcagcGTCGTCGCCGCCGCCGCACTCGCCAGAGACGTGATGT
CACCATCACGCTCGAGGAAATGAAAGCGGGTATGGAATTGGAAGGCGTCG
TCAAGAACGTAACGGAGTACGGAGCTTTCATAGGAGACACGGGAGCCCCT
ACCGATGGTTTGTTGCATGTTTCGCAGTTGGGAGACGGTTTCATTGAAAA
CGTCGCCGATGTCGTCAAAATTGGCGACAAAGTCAAAGTCAGGGTGCTTA
GTGTCGATATCGACAAAGGCAACTTTTCGCTCACCATGAAAAGCGCCGAG
CAACTTGGTAGTGGCGAGTCCAGAAGAGAAGCTTCAAAGGAGGCTGCCGC
CAATCGCAAGCGCGAGTTGAACAAAAAATGGGATTCTTTTACCTACGATG
ACAAGGTATATGTCGATGCCAAGGTCGTATCACTCACTGATTTCGGAGCC
TTTTGTCGCCTAGTAGATGCAGATGGAAACACACAAGACGCTCCAACCGA
CGGTTTGATCCATATTTCGGAAGTCAGCAATGAAAGAGTCCAAAGTGTCG
CCAGCGTCTTGAGCACGGGACAAAACGTAAAGGTCAGAATTGTTGGAGCT
GATCGTAAGAGAAATAGGATTTCCTTGTCCATGAAAGACCCTTCGGCCGC
TTCAAGTGAACACCGCCACCAAACCGCTTCTGCCGAGGACATTGCAGAGG
CTGAAAAGAATCAACCGCAGTTCAAGACTGCTTTCCAATTGGCGTTTGAA
AAGGCTGAGACGGCGATCAGTCAGTAG

protein sequence of Gchil3769.t1

>Gchil3769.t1 ID=Gchil3769.t1|Name=Gchil3769.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=409bp
MAPFAFAVHVAATTLRFSSFTSSSSSSSSSLCTRVPLRIALRPAERYVTL
RRVTACVQPPPSADAQHELPTPPHNEPDHAQPQIHPEAVASDTLATAPAE
AAAPAEAAAPAEAAAPAEAAAPAEAAASPEAHTQTGGAQVEAEEQQQQQQ
QQQQRRRRRRTRQRRDVTITLEEMKAGMELEGVVKNVTEYGAFIGDTGAP
TDGLLHVSQLGDGFIENVADVVKIGDKVKVRVLSVDIDKGNFSLTMKSAE
QLGSGESRREASKEAAANRKRELNKKWDSFTYDDKVYVDAKVVSLTDFGA
FCRLVDADGNTQDAPTDGLIHISEVSNERVQSVASVLSTGQNVKVRIVGA
DRKRNRISLSMKDPSAASSEHRHQTASAEDIAEAEKNQPQFKTAFQLAFE
KAETAISQ*

mRNA from alignment at tig00000010_pilon:218161..219387+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3769.t1 ID=Gchil3769.t1|Name=Gchil3769.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000010_pilon:218161..219387+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGTTTGCTTTCGCCGTTCATGTCGCCGCAACAACGCTTCGATT
TTCGTCTTTTACAtcttcttcttcttcttcttcttcttcGTTGTGCACGC
GTGTTCCGCTTCGCATCGCACTTCGCCCCGCCGAGCGCTACGTCACCCTC
AGACGTGTTACCGCTTGTGTTCAGCCACCACCGTCTGCAGACGCTCAACA
CGAGCTCCCCACCCCGCCGCACAATGAGCCTGACCATGCTCAGCCGCAGA
TCCACCCCGAAGCCGTCGCATCGGACACGCTCGCCACTGCACcggctgaa
gcggctgcaccggctgaagcggctgcaccggctgaagcggctgcaccggc
tgaagcggctgcaccggctgaagcggctgCATCGCCCGAAGCTCACACTC
AAACTGGTGGGGCTCAAGTCGAAGCCGAGGagcagcagcagcaacagcag
cagcagcagcagcGTCGTCGCCGCCGCCGCACTCGCCAGAGACGTGATGT
CACCATCACGCTCGAGGAAATGAAAGCGGGTATGGAATTGGAAGGCGTCG
TCAAGAACGTAACGGAGTACGGAGCTTTCATAGGAGACACGGGAGCCCCT
ACCGATGGTTTGTTGCATGTTTCGCAGTTGGGAGACGGTTTCATTGAAAA
CGTCGCCGATGTCGTCAAAATTGGCGACAAAGTCAAAGTCAGGGTGCTTA
GTGTCGATATCGACAAAGGCAACTTTTCGCTCACCATGAAAAGCGCCGAG
CAACTTGGTAGTGGCGAGTCCAGAAGAGAAGCTTCAAAGGAGGCTGCCGC
CAATCGCAAGCGCGAGTTGAACAAAAAATGGGATTCTTTTACCTACGATG
ACAAGGTATATGTCGATGCCAAGGTCGTATCACTCACTGATTTCGGAGCC
TTTTGTCGCCTAGTAGATGCAGATGGAAACACACAAGACGCTCCAACCGA
CGGTTTGATCCATATTTCGGAAGTCAGCAATGAAAGAGTCCAAAGTGTCG
CCAGCGTCTTGAGCACGGGACAAAACGTAAAGGTCAGAATTGTTGGAGCT
GATCGTAAGAGAAATAGGATTTCCTTGTCCATGAAAGACCCTTCGGCCGC
TTCAAGTGAACACCGCCACCAAACCGCTTCTGCCGAGGACATTGCAGAGG
CTGAAAAGAATCAACCGCAGTTCAAGACTGCTTTCCAATTGGCGTTTGAA
AAGGCTGAGACGGCGATCAGTCAGTAG

Coding sequence (CDS) from alignment at tig00000010_pilon:218161..219387+

>Gchil3769.t1 ID=Gchil3769.t1|Name=Gchil3769.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1227bp|location=Sequence derived from alignment at tig00000010_pilon:218161..219387+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGTTTGCTTTCGCCGTTCATGTCGCCGCAACAACGCTTCGATT
TTCGTCTTTTACAtcttcttcttcttcttcttcttcttcGTTGTGCACGC
GTGTTCCGCTTCGCATCGCACTTCGCCCCGCCGAGCGCTACGTCACCCTC
AGACGTGTTACCGCTTGTGTTCAGCCACCACCGTCTGCAGACGCTCAACA
CGAGCTCCCCACCCCGCCGCACAATGAGCCTGACCATGCTCAGCCGCAGA
TCCACCCCGAAGCCGTCGCATCGGACACGCTCGCCACTGCACcggctgaa
gcggctgcaccggctgaagcggctgcaccggctgaagcggctgcaccggc
tgaagcggctgcaccggctgaagcggctgCATCGCCCGAAGCTCACACTC
AAACTGGTGGGGCTCAAGTCGAAGCCGAGGagcagcagcagcaacagcag
cagcagcagcagcGTCGTCGCCGCCGCCGCACTCGCCAGAGACGTGATGT
CACCATCACGCTCGAGGAAATGAAAGCGGGTATGGAATTGGAAGGCGTCG
TCAAGAACGTAACGGAGTACGGAGCTTTCATAGGAGACACGGGAGCCCCT
ACCGATGGTTTGTTGCATGTTTCGCAGTTGGGAGACGGTTTCATTGAAAA
CGTCGCCGATGTCGTCAAAATTGGCGACAAAGTCAAAGTCAGGGTGCTTA
GTGTCGATATCGACAAAGGCAACTTTTCGCTCACCATGAAAAGCGCCGAG
CAACTTGGTAGTGGCGAGTCCAGAAGAGAAGCTTCAAAGGAGGCTGCCGC
CAATCGCAAGCGCGAGTTGAACAAAAAATGGGATTCTTTTACCTACGATG
ACAAGGTATATGTCGATGCCAAGGTCGTATCACTCACTGATTTCGGAGCC
TTTTGTCGCCTAGTAGATGCAGATGGAAACACACAAGACGCTCCAACCGA
CGGTTTGATCCATATTTCGGAAGTCAGCAATGAAAGAGTCCAAAGTGTCG
CCAGCGTCTTGAGCACGGGACAAAACGTAAAGGTCAGAATTGTTGGAGCT
GATCGTAAGAGAAATAGGATTTCCTTGTCCATGAAAGACCCTTCGGCCGC
TTCAAGTGAACACCGCCACCAAACCGCTTCTGCCGAGGACATTGCAGAGG
CTGAAAAGAATCAACCGCAGTTCAAGACTGCTTTCCAATTGGCGTTTGAA
AAGGCTGAGACGGCGATCAGTCAGTAG