Gchil6949.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6949.t1
Unique Name	Gchil6949.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	491

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004398_pilon	contig	tig00004398_pilon:221390..222862 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3075.A0A087SHD9
PFAMs	TCR
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K21776
KEGG Pathway	ko04218,map04218
Evalue	3.08e-25
EggNOG OGs	KOG1171@1\|root,KOG1171@2759\|Eukaryota,37RBY@33090\|Viridiplantae,34IA0@3041\|Chlorophyta
Description	Tesmin/TSO1-like CXC domain
COG category	P
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6949	Gchil6949	Gracilaria chilensis NLEC103_M9 male	gene	tig00004398_pilon 221390..222862 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6949.t1.start1	Gchil6949.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004398_pilon 221390..221392 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6949.t1.CDS1	Gchil6949.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004398_pilon 221390..222862 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6949.t1.exon1	Gchil6949.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004398_pilon 221390..222862 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6949.t1.stop1	Gchil6949.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004398_pilon 222860..222862 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6949.t1	Gchil6949.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004398_pilon 221390..222862 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004398_pilon:221390..222862+
coding sequence from alignment at tig00004398_pilon:221390..222862+

mRNA sequence

>Gchil6949.t1 ID=Gchil6949.t1|Name=Gchil6949.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=491bp
MPEPVTPVKPSPSRCLDSPLGPPDPLFASAAFSTPQPSPSAASAARFNPD
DLLVSPPPPTSTPDLRRKLFATDALLTNAPPSSIRRHPCLTGLSPPPPPL
PHSQPPVNHRLDHHFRHHSADHSGATNTPSATLNHNSEAPASDHPQPPLT
TDPKPEPVSDSLPSSVTQPPQQKPPFQFTSTKCNCKASRCLKLYCPCFAS
SAVCAPTCTCQNCQNNPQTFPAVNKARSSVLSRDPRAFEPRVKAASAAPD
IHTKGCNCRKGCSKKYCVCRELKVACGPRCTCSGPKGCQNGKNVQESTVT
DPRQPAACAKKRNHIEQLTPPSPLHAIATSFSPGFPPLAALSPPLKLPDD
PFDDLRDVITDPNDPLVSPDAIKTRNACSSFVPPVNRRIALDDDSFHDHS
HLSLSVEPKPTHAFEPNHSNTPKNALKLHVMDLDSSPTTGIKPETPPSKF
RTAFGSFRKSDKIEKYSRPRLPRILRVKMGTGRALKRFNI*

spliced messenger RNA

>Gchil6949.t1 ID=Gchil6949.t1|Name=Gchil6949.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00004398_pilon:221390..222862+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGAGCCCGTCACCCCCGTCAAACCCTCCCCCTCCCGATGTCTAGA
CTCCCCTTTGGGCCCCCCCGATCCTCTCTTcgcctccgccgcgttttcga
cgccgcagccctctccgtccgcagcctcagccgccCGATTCAACCCCGAT
GACCTCCTGGTCTCGCCCCCGCCCCCCACTTCCACCCCGGATCTCCGCCG
CAAGCTGTTTGCCACCGACGCCTTGCTCACCAACGCTCCCCCCTCTTCCA
TCCGTCGACACCCATGCCTCACTGGCCTGTCCCCCCCGCCCCCGCCACTC
CCACATTCGCAGCCCCCCGTGAACCATCGCTTAGACCACCACTTTCGCCA
CCATTCAGCCGACCACTCAGGTGCCACCAACACTCCATCCGCCACCCTCA
ACCACAATAGCGAAGCGCCCGCCTCAGACCATCCTCAGCCGCCACTCACA
ACCGATCCAAAGCCCGAGCCAGTTTCCGACTCTCTCCCCTCATCTGTAAC
CCAACCTCCACAGCAAAAGCCCCCTTTCCAATTCACCTCCACCAAGTGCA
ACTGCAAGGCCAGCCGCTGTCTCAAGCTCTATTGCCCGTGTTTTGCCTCC
TCAGCAGTTTGCGCCCCAACGTGCACCTGTCAAAACTGCCAAAACAACCC
GCAAACCTTTCCGGCCGTCAACAAAGCAAGGTCCTCGGTGCTTTCCAGGG
ACCCTCGCGCTTTTGAACCCCGAGTCAAGGCCGCTTCGGCCGCCCCCGAT
ATACACACCAAGGGCTGCAATTGTCGGAAGGGCTGCTCGAAAAAGTACTG
CGTATGTCGAGAATTGAAGGTAGCATGTGGACCTCGCTGCACGTGTTCTG
GTCCAAAGGGCTGTCAGAATGGAAAGAATGTACAAGAATCCACTGTCACC
GATCCGCGCCAACCTGCAGCTTGTGCCAAGAAACGCAACCACATTGAACA
ACTCACACCACCTTCTCCGTTGCACGCAATCGCCACCTCATTCAGTCCTG
GCTTTCCGCCACTTGCCGCTCTTTCACCGCCGCTCAAGCTTCCGGATGAT
CCTTTTGATGATTTGCGCGATGTCATAACCGACCCGAACGACCCGCTAGT
ATCGCCGGATGCCATAAAGACACGCAACGCTTGCTCGTCGTTTGTTCCGC
CTGTCAATCGTCGCATTGCTCTGGATGATGACTCTTTTCATGACCATAGC
CATCTTTCTCTCTCTGTTGAGCCCAAGCCAACGCACGCGTTCGAACCGAA
CCATTCTAATACACCGAAGAATGCACTTAAACTGCACGTCATGGACTTGG
ATTCCTCCCCGACAACGGGCATCAAACCCGAAACACCGCCCTCGAAATTT
CGCACTGCCTTCGGTTCGTTTCGCAAATCGGACAAGATTGAAAAGTACAG
TCGACCACGTCTTCCGCGTATTCTTCGCGTCAAGATGGGAACCGGAAGGG
CTTTGAAACGATTTAATATTTGA

protein sequence of Gchil6949.t1

>Gchil6949.t1 ID=Gchil6949.t1|Name=Gchil6949.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=491bp
MPEPVTPVKPSPSRCLDSPLGPPDPLFASAAFSTPQPSPSAASAARFNPD
DLLVSPPPPTSTPDLRRKLFATDALLTNAPPSSIRRHPCLTGLSPPPPPL
PHSQPPVNHRLDHHFRHHSADHSGATNTPSATLNHNSEAPASDHPQPPLT
TDPKPEPVSDSLPSSVTQPPQQKPPFQFTSTKCNCKASRCLKLYCPCFAS
SAVCAPTCTCQNCQNNPQTFPAVNKARSSVLSRDPRAFEPRVKAASAAPD
IHTKGCNCRKGCSKKYCVCRELKVACGPRCTCSGPKGCQNGKNVQESTVT
DPRQPAACAKKRNHIEQLTPPSPLHAIATSFSPGFPPLAALSPPLKLPDD
PFDDLRDVITDPNDPLVSPDAIKTRNACSSFVPPVNRRIALDDDSFHDHS
HLSLSVEPKPTHAFEPNHSNTPKNALKLHVMDLDSSPTTGIKPETPPSKF
RTAFGSFRKSDKIEKYSRPRLPRILRVKMGTGRALKRFNI*

mRNA from alignment at tig00004398_pilon:221390..222862+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6949.t1 ID=Gchil6949.t1|Name=Gchil6949.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00004398_pilon:221390..222862+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGAGCCCGTCACCCCCGTCAAACCCTCCCCCTCCCGATGTCTAGA
CTCCCCTTTGGGCCCCCCCGATCCTCTCTTcgcctccgccgcgttttcga
cgccgcagccctctccgtccgcagcctcagccgccCGATTCAACCCCGAT
GACCTCCTGGTCTCGCCCCCGCCCCCCACTTCCACCCCGGATCTCCGCCG
CAAGCTGTTTGCCACCGACGCCTTGCTCACCAACGCTCCCCCCTCTTCCA
TCCGTCGACACCCATGCCTCACTGGCCTGTCCCCCCCGCCCCCGCCACTC
CCACATTCGCAGCCCCCCGTGAACCATCGCTTAGACCACCACTTTCGCCA
CCATTCAGCCGACCACTCAGGTGCCACCAACACTCCATCCGCCACCCTCA
ACCACAATAGCGAAGCGCCCGCCTCAGACCATCCTCAGCCGCCACTCACA
ACCGATCCAAAGCCCGAGCCAGTTTCCGACTCTCTCCCCTCATCTGTAAC
CCAACCTCCACAGCAAAAGCCCCCTTTCCAATTCACCTCCACCAAGTGCA
ACTGCAAGGCCAGCCGCTGTCTCAAGCTCTATTGCCCGTGTTTTGCCTCC
TCAGCAGTTTGCGCCCCAACGTGCACCTGTCAAAACTGCCAAAACAACCC
GCAAACCTTTCCGGCCGTCAACAAAGCAAGGTCCTCGGTGCTTTCCAGGG
ACCCTCGCGCTTTTGAACCCCGAGTCAAGGCCGCTTCGGCCGCCCCCGAT
ATACACACCAAGGGCTGCAATTGTCGGAAGGGCTGCTCGAAAAAGTACTG
CGTATGTCGAGAATTGAAGGTAGCATGTGGACCTCGCTGCACGTGTTCTG
GTCCAAAGGGCTGTCAGAATGGAAAGAATGTACAAGAATCCACTGTCACC
GATCCGCGCCAACCTGCAGCTTGTGCCAAGAAACGCAACCACATTGAACA
ACTCACACCACCTTCTCCGTTGCACGCAATCGCCACCTCATTCAGTCCTG
GCTTTCCGCCACTTGCCGCTCTTTCACCGCCGCTCAAGCTTCCGGATGAT
CCTTTTGATGATTTGCGCGATGTCATAACCGACCCGAACGACCCGCTAGT
ATCGCCGGATGCCATAAAGACACGCAACGCTTGCTCGTCGTTTGTTCCGC
CTGTCAATCGTCGCATTGCTCTGGATGATGACTCTTTTCATGACCATAGC
CATCTTTCTCTCTCTGTTGAGCCCAAGCCAACGCACGCGTTCGAACCGAA
CCATTCTAATACACCGAAGAATGCACTTAAACTGCACGTCATGGACTTGG
ATTCCTCCCCGACAACGGGCATCAAACCCGAAACACCGCCCTCGAAATTT
CGCACTGCCTTCGGTTCGTTTCGCAAATCGGACAAGATTGAAAAGTACAG
TCGACCACGTCTTCCGCGTATTCTTCGCGTCAAGATGGGAACCGGAAGGG
CTTTGAAACGATTTAATATTTGA

Coding sequence (CDS) from alignment at tig00004398_pilon:221390..222862+

>Gchil6949.t1 ID=Gchil6949.t1|Name=Gchil6949.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1473bp|location=Sequence derived from alignment at tig00004398_pilon:221390..222862+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGAGCCCGTCACCCCCGTCAAACCCTCCCCCTCCCGATGTCTAGA
CTCCCCTTTGGGCCCCCCCGATCCTCTCTTcgcctccgccgcgttttcga
cgccgcagccctctccgtccgcagcctcagccgccCGATTCAACCCCGAT
GACCTCCTGGTCTCGCCCCCGCCCCCCACTTCCACCCCGGATCTCCGCCG
CAAGCTGTTTGCCACCGACGCCTTGCTCACCAACGCTCCCCCCTCTTCCA
TCCGTCGACACCCATGCCTCACTGGCCTGTCCCCCCCGCCCCCGCCACTC
CCACATTCGCAGCCCCCCGTGAACCATCGCTTAGACCACCACTTTCGCCA
CCATTCAGCCGACCACTCAGGTGCCACCAACACTCCATCCGCCACCCTCA
ACCACAATAGCGAAGCGCCCGCCTCAGACCATCCTCAGCCGCCACTCACA
ACCGATCCAAAGCCCGAGCCAGTTTCCGACTCTCTCCCCTCATCTGTAAC
CCAACCTCCACAGCAAAAGCCCCCTTTCCAATTCACCTCCACCAAGTGCA
ACTGCAAGGCCAGCCGCTGTCTCAAGCTCTATTGCCCGTGTTTTGCCTCC
TCAGCAGTTTGCGCCCCAACGTGCACCTGTCAAAACTGCCAAAACAACCC
GCAAACCTTTCCGGCCGTCAACAAAGCAAGGTCCTCGGTGCTTTCCAGGG
ACCCTCGCGCTTTTGAACCCCGAGTCAAGGCCGCTTCGGCCGCCCCCGAT
ATACACACCAAGGGCTGCAATTGTCGGAAGGGCTGCTCGAAAAAGTACTG
CGTATGTCGAGAATTGAAGGTAGCATGTGGACCTCGCTGCACGTGTTCTG
GTCCAAAGGGCTGTCAGAATGGAAAGAATGTACAAGAATCCACTGTCACC
GATCCGCGCCAACCTGCAGCTTGTGCCAAGAAACGCAACCACATTGAACA
ACTCACACCACCTTCTCCGTTGCACGCAATCGCCACCTCATTCAGTCCTG
GCTTTCCGCCACTTGCCGCTCTTTCACCGCCGCTCAAGCTTCCGGATGAT
CCTTTTGATGATTTGCGCGATGTCATAACCGACCCGAACGACCCGCTAGT
ATCGCCGGATGCCATAAAGACACGCAACGCTTGCTCGTCGTTTGTTCCGC
CTGTCAATCGTCGCATTGCTCTGGATGATGACTCTTTTCATGACCATAGC
CATCTTTCTCTCTCTGTTGAGCCCAAGCCAACGCACGCGTTCGAACCGAA
CCATTCTAATACACCGAAGAATGCACTTAAACTGCACGTCATGGACTTGG
ATTCCTCCCCGACAACGGGCATCAAACCCGAAACACCGCCCTCGAAATTT
CGCACTGCCTTCGGTTCGTTTCGCAAATCGGACAAGATTGAAAAGTACAG
TCGACCACGTCTTCCGCGTATTCTTCGCGTCAAGATGGGAACCGGAAGGG
CTTTGAAACGATTTAATATTTGA