Gchil6612.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6612.t1
Unique NameGchil6612.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:882759..883109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1192034.CAP_2957
PFAMsTransthyretin
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC03393
KEGG koko:K07127
KEGG TC9.B.35.1.2,9.B.35.2
KEGG ReactionR06601
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
Evalue2.05e-32
EggNOG OGsCOG2351@1|root,COG2351@2|Bacteria,1RH84@1224|Proteobacteria,42W18@68525|delta/epsilon subdivisions,2WZ19@28221|Deltaproteobacteria,2Z13S@29|Myxococcales
EC3.5.2.17
DescriptionTransthyretin
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6612Gchil6612Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 882759..883109 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6612.t1.start1Gchil6612.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 882759..882761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6612.t1.CDS1Gchil6612.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 882759..883109 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6612.t1.exon1Gchil6612.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 882759..883109 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6612.t1.stop1Gchil6612.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 883107..883109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6612.t1Gchil6612.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 882759..883109 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6612.t1 ID=Gchil6612.t1|Name=Gchil6612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=117bp
MTKSPLTTHALDTSLGKPAAGLEVVLLRIWSENEATLITSKVCDKDGRVN
DMMSDSQLWIPGTYRLRFATGKYYDRQGQKSFYPHVDVTFNIENLSEHYH
VPLLLSPFGYSTYRGS*
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spliced messenger RNA

>Gchil6612.t1 ID=Gchil6612.t1|Name=Gchil6612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00004390_pilon:882759..883109+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAAAAGTCCTCTTACCACTCATGCGTTGGATACGTCGTTGGGAAA
GCCGGCAGCCGGTCTCGAAGTCGTGCTTCTTCGTATATGGTCAGAGAATG
AGGCAACTCTAATCACGTCGAAAGTATGCGATAAAGATGGTCGCGTGAAC
GACATGATGTCTGATTCCCAGTTATGGATTCCTGGGACATATCGTTTACG
GTTTGCAACGGGCAAGTACTATGACAGGCAAGGACAGAAAAGTTTTTATC
CTCATGTGGATGTGACGTTTAATATAGAGAATCTCTCTGAACATTACCAT
GTTCCCCTTCTTCTCAGTCCATTTGGCTACAGTACATATCGTGGCTCCTA
A
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protein sequence of Gchil6612.t1

>Gchil6612.t1 ID=Gchil6612.t1|Name=Gchil6612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=117bp
MTKSPLTTHALDTSLGKPAAGLEVVLLRIWSENEATLITSKVCDKDGRVN
DMMSDSQLWIPGTYRLRFATGKYYDRQGQKSFYPHVDVTFNIENLSEHYH
VPLLLSPFGYSTYRGS*
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mRNA from alignment at tig00004390_pilon:882759..883109+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6612.t1 ID=Gchil6612.t1|Name=Gchil6612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00004390_pilon:882759..883109+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCAAAAGTCCTCTTACCACTCATGCGTTGGATACGTCGTTGGGAAA
GCCGGCAGCCGGTCTCGAAGTCGTGCTTCTTCGTATATGGTCAGAGAATG
AGGCAACTCTAATCACGTCGAAAGTATGCGATAAAGATGGTCGCGTGAAC
GACATGATGTCTGATTCCCAGTTATGGATTCCTGGGACATATCGTTTACG
GTTTGCAACGGGCAAGTACTATGACAGGCAAGGACAGAAAAGTTTTTATC
CTCATGTGGATGTGACGTTTAATATAGAGAATCTCTCTGAACATTACCAT
GTTCCCCTTCTTCTCAGTCCATTTGGCTACAGTACATATCGTGGCTCCTA
A
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Coding sequence (CDS) from alignment at tig00004390_pilon:882759..883109+

>Gchil6612.t1 ID=Gchil6612.t1|Name=Gchil6612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=351bp|location=Sequence derived from alignment at tig00004390_pilon:882759..883109+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCAAAAGTCCTCTTACCACTCATGCGTTGGATACGTCGTTGGGAAA
GCCGGCAGCCGGTCTCGAAGTCGTGCTTCTTCGTATATGGTCAGAGAATG
AGGCAACTCTAATCACGTCGAAAGTATGCGATAAAGATGGTCGCGTGAAC
GACATGATGTCTGATTCCCAGTTATGGATTCCTGGGACATATCGTTTACG
GTTTGCAACGGGCAAGTACTATGACAGGCAAGGACAGAAAAGTTTTTATC
CTCATGTGGATGTGACGTTTAATATAGAGAATCTCTCTGAACATTACCAT
GTTCCCCTTCTTCTCAGTCCATTTGGCTACAGTACATATCGTGGCTCCTA
A
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