Gchil6558.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6558.t1
Unique Name	Gchil6558.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	358

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:623528..624601 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42099.EPrPV00000016339
PFAMs	PP2C
Max annot lvl	121069\|Pythiales
Evalue	2e-28
EggNOG OGs	COG0631@1\|root,KOG0698@2759\|Eukaryota,1MDVZ@121069\|Pythiales
Description	Sigma factor PP2C-like phosphatases
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6558	Gchil6558	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 623528..624601 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6558.t1.start1	Gchil6558.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 623528..623530 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6558.t1.CDS1	Gchil6558.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 623528..624601 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6558.t1.exon1	Gchil6558.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 623528..624601 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6558.t1.stop1	Gchil6558.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 624599..624601 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6558.t1	Gchil6558.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 623528..624601 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:623528..624601+
coding sequence from alignment at tig00004390_pilon:623528..624601+

mRNA sequence

>Gchil6558.t1 ID=Gchil6558.t1|Name=Gchil6558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=358bp
MSANAPPPVSMNAALPTLPDPSSLSQHLSSASPDLPATLFPIRLPPPPPP
TKKRPRPRISVPSFDFVPPSNVSSLPTSFYPRVLSAKESDALVGLWRNHA
LSACASRRGSRRAQNEDRVFCDHANSIYGVCDGHGVGAVSQAPTEQLAAD
TVRKLLPSMLLTMPVCDAFHHIDGIVLGKLDDRSVVGTTVALVRIFQSTR
VMQVAHVGDSRVVVIAADGTARTLTVDHSPSRPDEMQRIEQGGGYVLRGR
VNDILAVSRAIGDSLVKYVVPPTPDVTKYVLRDDDQLVVIGTDGLWDLLS
DAQVGAVCREMALKRGSAAGAAHLQQTADAILAKAAQFGRGDDATVVVVD
VRKDTCF*

spliced messenger RNA

>Gchil6558.t1 ID=Gchil6558.t1|Name=Gchil6558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00004390_pilon:623528..624601+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCCAACGCCCCGCCACCCGTTTCGATGAACGCCGCCTTGCCCAC
GCTTCCAGACCCCTCCTCCCTCTCCCAGCACCTTTcctccgcctcgcccg
acctccccgccaccctctttccaatccgcctgccaccgccgccgccgccA
ACCAAAAAGAGGCCGCGACCAAGGATATCTGTTCCTTCGTTTGATTTCGT
TCCCCCGTCTAATGTGTCCTCCCTGCCTACTTCGTTCTACCCGCGGGTGC
TCTCCGCCAAGGAGAGCGATGCACTCGTTGGTCTTTGGAGAAACCACGCC
CTCTCCGCCTGCGCCAGTCGTCGAGGCTCGCGCCGCGCCCAGAATGAGGA
TCGCGTCTTTTGTGATCACGCCAACAGCATATACGGCGTGTGCGACGGTC
ACGGAGTGGGCGCCGTATCACAAGCGCCCACCGAACAGCTTGCCGCCGAT
ACCGTGCGCAAGTTGCTTCCGTCCATGTTGCTCACCATGCCGGTGTGCGA
CGCGTTTCACCATATTGATGGTATAGTGCTCGGAAAGCTTGACGACCGCA
GCGTGGTTGGAACTACCGTCGCACTTGTGCGAATCTTTCAAAGCACCCGC
GTCATGCAGGTGGCGCATGTGGGCGACTCTCGTGTCGTCGTCATTGCCGC
TGATGGTACTGCTCGCACGCTCACGGTCGATCACTCACCCAGTCGCCCCG
ACGAAATGCAGCGCATTGAGCAGGGCGGTGGTTACGTGCTACGCGGAAGA
GTGAATGATATTCTGGCCGTCAGCCGCGCCATTGGAGATAGTTTGGTCAA
GTATGTAGTGCCTCCCACGCCGGATGTCACCAAGTATGTACTGAGAGATG
ACGACCAGCTGGTCGTCATAGGCACGGATGGGCTTTGGGACTTGCTCAGC
GACGCGCAAGTAGGAGCAGTTTGTCGTGAAATGGCGCTTAAAAGGGGCTC
CGCAGCCGGGGCGGCTCACTTGCAACAAACAGCGGATGCTATTTTGGCGA
AGGCGGCGCAGTTTGGGCGCGGCGACGATGCTACGGTCGTCGTGGTAGAT
GTTCGCAAGGACACTTGTTTTTAG

protein sequence of Gchil6558.t1

>Gchil6558.t1 ID=Gchil6558.t1|Name=Gchil6558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=358bp
MSANAPPPVSMNAALPTLPDPSSLSQHLSSASPDLPATLFPIRLPPPPPP
TKKRPRPRISVPSFDFVPPSNVSSLPTSFYPRVLSAKESDALVGLWRNHA
LSACASRRGSRRAQNEDRVFCDHANSIYGVCDGHGVGAVSQAPTEQLAAD
TVRKLLPSMLLTMPVCDAFHHIDGIVLGKLDDRSVVGTTVALVRIFQSTR
VMQVAHVGDSRVVVIAADGTARTLTVDHSPSRPDEMQRIEQGGGYVLRGR
VNDILAVSRAIGDSLVKYVVPPTPDVTKYVLRDDDQLVVIGTDGLWDLLS
DAQVGAVCREMALKRGSAAGAAHLQQTADAILAKAAQFGRGDDATVVVVD
VRKDTCF*

mRNA from alignment at tig00004390_pilon:623528..624601+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6558.t1 ID=Gchil6558.t1|Name=Gchil6558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00004390_pilon:623528..624601+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCCAACGCCCCGCCACCCGTTTCGATGAACGCCGCCTTGCCCAC
GCTTCCAGACCCCTCCTCCCTCTCCCAGCACCTTTcctccgcctcgcccg
acctccccgccaccctctttccaatccgcctgccaccgccgccgccgccA
ACCAAAAAGAGGCCGCGACCAAGGATATCTGTTCCTTCGTTTGATTTCGT
TCCCCCGTCTAATGTGTCCTCCCTGCCTACTTCGTTCTACCCGCGGGTGC
TCTCCGCCAAGGAGAGCGATGCACTCGTTGGTCTTTGGAGAAACCACGCC
CTCTCCGCCTGCGCCAGTCGTCGAGGCTCGCGCCGCGCCCAGAATGAGGA
TCGCGTCTTTTGTGATCACGCCAACAGCATATACGGCGTGTGCGACGGTC
ACGGAGTGGGCGCCGTATCACAAGCGCCCACCGAACAGCTTGCCGCCGAT
ACCGTGCGCAAGTTGCTTCCGTCCATGTTGCTCACCATGCCGGTGTGCGA
CGCGTTTCACCATATTGATGGTATAGTGCTCGGAAAGCTTGACGACCGCA
GCGTGGTTGGAACTACCGTCGCACTTGTGCGAATCTTTCAAAGCACCCGC
GTCATGCAGGTGGCGCATGTGGGCGACTCTCGTGTCGTCGTCATTGCCGC
TGATGGTACTGCTCGCACGCTCACGGTCGATCACTCACCCAGTCGCCCCG
ACGAAATGCAGCGCATTGAGCAGGGCGGTGGTTACGTGCTACGCGGAAGA
GTGAATGATATTCTGGCCGTCAGCCGCGCCATTGGAGATAGTTTGGTCAA
GTATGTAGTGCCTCCCACGCCGGATGTCACCAAGTATGTACTGAGAGATG
ACGACCAGCTGGTCGTCATAGGCACGGATGGGCTTTGGGACTTGCTCAGC
GACGCGCAAGTAGGAGCAGTTTGTCGTGAAATGGCGCTTAAAAGGGGCTC
CGCAGCCGGGGCGGCTCACTTGCAACAAACAGCGGATGCTATTTTGGCGA
AGGCGGCGCAGTTTGGGCGCGGCGACGATGCTACGGTCGTCGTGGTAGAT
GTTCGCAAGGACACTTGTTTTTAG

Coding sequence (CDS) from alignment at tig00004390_pilon:623528..624601+

>Gchil6558.t1 ID=Gchil6558.t1|Name=Gchil6558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00004390_pilon:623528..624601+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCCAACGCCCCGCCACCCGTTTCGATGAACGCCGCCTTGCCCAC
GCTTCCAGACCCCTCCTCCCTCTCCCAGCACCTTTcctccgcctcgcccg
acctccccgccaccctctttccaatccgcctgccaccgccgccgccgccA
ACCAAAAAGAGGCCGCGACCAAGGATATCTGTTCCTTCGTTTGATTTCGT
TCCCCCGTCTAATGTGTCCTCCCTGCCTACTTCGTTCTACCCGCGGGTGC
TCTCCGCCAAGGAGAGCGATGCACTCGTTGGTCTTTGGAGAAACCACGCC
CTCTCCGCCTGCGCCAGTCGTCGAGGCTCGCGCCGCGCCCAGAATGAGGA
TCGCGTCTTTTGTGATCACGCCAACAGCATATACGGCGTGTGCGACGGTC
ACGGAGTGGGCGCCGTATCACAAGCGCCCACCGAACAGCTTGCCGCCGAT
ACCGTGCGCAAGTTGCTTCCGTCCATGTTGCTCACCATGCCGGTGTGCGA
CGCGTTTCACCATATTGATGGTATAGTGCTCGGAAAGCTTGACGACCGCA
GCGTGGTTGGAACTACCGTCGCACTTGTGCGAATCTTTCAAAGCACCCGC
GTCATGCAGGTGGCGCATGTGGGCGACTCTCGTGTCGTCGTCATTGCCGC
TGATGGTACTGCTCGCACGCTCACGGTCGATCACTCACCCAGTCGCCCCG
ACGAAATGCAGCGCATTGAGCAGGGCGGTGGTTACGTGCTACGCGGAAGA
GTGAATGATATTCTGGCCGTCAGCCGCGCCATTGGAGATAGTTTGGTCAA
GTATGTAGTGCCTCCCACGCCGGATGTCACCAAGTATGTACTGAGAGATG
ACGACCAGCTGGTCGTCATAGGCACGGATGGGCTTTGGGACTTGCTCAGC
GACGCGCAAGTAGGAGCAGTTTGTCGTGAAATGGCGCTTAAAAGGGGCTC
CGCAGCCGGGGCGGCTCACTTGCAACAAACAGCGGATGCTATTTTGGCGA
AGGCGGCGCAGTTTGGGCGCGGCGACGATGCTACGGTCGTCGTGGTAGAT
GTTCGCAAGGACACTTGTTTTTAG