Gchil6632.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6632.t1
Unique Name	Gchil6632.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	253

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:1072186..1072944 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005845006.1
Preferred name	GST
PFAMs	GST_C_2,GST_N_3
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG ko	ko:K00799
KEGG TC	1.A.12.2.2,1.A.12.3.2
KEGG Reaction	R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathway	ko00480,ko00980,ko00982,ko00983,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map05200,map05204,map05225,map05418
Evalue	2.58e-44
EggNOG OGs	COG0625@1\|root,KOG0867@2759\|Eukaryota,37TY0@33090\|Viridiplantae,34HIU@3041\|Chlorophyta
EC	2.5.1.18
Description	glutathione S-transferase
COG category	O
BRITE	ko00000,ko00001,ko01000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6632	Gchil6632	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 1072186..1072944 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6632.t1.start1	Gchil6632.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 1072186..1072188 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6632.t1.CDS1	Gchil6632.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 1072186..1072944 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6632.t1.exon1	Gchil6632.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 1072186..1072944 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6632.t1.stop1	Gchil6632.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 1072942..1072944 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6632.t1	Gchil6632.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 1072186..1072944 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:1072186..1072944+
coding sequence from alignment at tig00004390_pilon:1072186..1072944+

mRNA sequence

>Gchil6632.t1 ID=Gchil6632.t1|Name=Gchil6632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=253bp
MVHATVELPKVQVTLYGSEVSNYTARCRYLIRRKCLPGEIVSICSPKVLG
GIKTESYLELNPLGKMPLLLIKKPGQKDEALFESSIICEYLSEEFVNLKP
SFRPVSPEARAKARLIANLLDLYVGPHHSYMYKKLEGDRATGARKMMEGF
DAIEHVLDPRGPYATGKTLSIADCCLLGNFPFYDYMLPTFFGWKPTDGRP
RLKAWRKHMINESPAARETYTEVFNALQIWWDNDRWVNLGMEALTTRPSL
PF*

spliced messenger RNA

>Gchil6632.t1 ID=Gchil6632.t1|Name=Gchil6632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00004390_pilon:1072186..1072944+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCATGCTACCGTGGAACTTCCTAAGGTTCAGGTAACTTTGTACGG
ATCAGAAGTGTCAAACTATACTGCTCGATGCAGATATCTTATCAGAAGAA
AATGCCTTCCCGGCGAAATAGTTTCGATCTGCTCACCGAAGGTTTTAGGA
GGCATTAAGACTGAATCTTATCTTGAACTAAATCCGTTGGGGAAAATGCC
ATTGCTTCTAATCAAGAAACCAGGCCAGAAGGATGAGGCTCTTTTTGAGA
GTTCTATTATTTGCGAATACCTTTCAGAAGAGTTTGTAAACCTGAAACCA
AGCTTTAGACCCGTTTCTCCGGAAGCTCGTGCAAAAGCAAGACTTATTGC
AAACTTGTTAGATCTCTACGTTGGACCTCACCATTCGTATATGTACAAAA
AGCTGGAAGGAGATCGGGCAACTGGCGCCCGAAAGATGATGGAAGGGTTC
GACGCTATCGAGCACGTGCTAGATCCCAGGGGACCGTATGCCACTGGAAA
GACCCTTTCGATAGCGGATTGTTGTCTATTAGGAAACTTCCCGTTTTACG
ATTACATGCTCCCAACTTTCTTTGGCTGGAAACCCACCGACGGCCGCCCA
AGACTGAAAGCCTGGCGGAAGCATATGATTAATGAATCTCCAGCAGCACG
AGAAACCTACACTGAAGTTTTCAATGCTCTCCAGATATGGTGGGACAATG
ATCGCTGGGTGAATCTTGGTATGGAAGCACTTACCACGCGCCCGTCTCTT
CCATTCTAA

protein sequence of Gchil6632.t1

>Gchil6632.t1 ID=Gchil6632.t1|Name=Gchil6632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=253bp
MVHATVELPKVQVTLYGSEVSNYTARCRYLIRRKCLPGEIVSICSPKVLG
GIKTESYLELNPLGKMPLLLIKKPGQKDEALFESSIICEYLSEEFVNLKP
SFRPVSPEARAKARLIANLLDLYVGPHHSYMYKKLEGDRATGARKMMEGF
DAIEHVLDPRGPYATGKTLSIADCCLLGNFPFYDYMLPTFFGWKPTDGRP
RLKAWRKHMINESPAARETYTEVFNALQIWWDNDRWVNLGMEALTTRPSL
PF*

mRNA from alignment at tig00004390_pilon:1072186..1072944+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6632.t1 ID=Gchil6632.t1|Name=Gchil6632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00004390_pilon:1072186..1072944+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCATGCTACCGTGGAACTTCCTAAGGTTCAGGTAACTTTGTACGG
ATCAGAAGTGTCAAACTATACTGCTCGATGCAGATATCTTATCAGAAGAA
AATGCCTTCCCGGCGAAATAGTTTCGATCTGCTCACCGAAGGTTTTAGGA
GGCATTAAGACTGAATCTTATCTTGAACTAAATCCGTTGGGGAAAATGCC
ATTGCTTCTAATCAAGAAACCAGGCCAGAAGGATGAGGCTCTTTTTGAGA
GTTCTATTATTTGCGAATACCTTTCAGAAGAGTTTGTAAACCTGAAACCA
AGCTTTAGACCCGTTTCTCCGGAAGCTCGTGCAAAAGCAAGACTTATTGC
AAACTTGTTAGATCTCTACGTTGGACCTCACCATTCGTATATGTACAAAA
AGCTGGAAGGAGATCGGGCAACTGGCGCCCGAAAGATGATGGAAGGGTTC
GACGCTATCGAGCACGTGCTAGATCCCAGGGGACCGTATGCCACTGGAAA
GACCCTTTCGATAGCGGATTGTTGTCTATTAGGAAACTTCCCGTTTTACG
ATTACATGCTCCCAACTTTCTTTGGCTGGAAACCCACCGACGGCCGCCCA
AGACTGAAAGCCTGGCGGAAGCATATGATTAATGAATCTCCAGCAGCACG
AGAAACCTACACTGAAGTTTTCAATGCTCTCCAGATATGGTGGGACAATG
ATCGCTGGGTGAATCTTGGTATGGAAGCACTTACCACGCGCCCGTCTCTT
CCATTCTAA

Coding sequence (CDS) from alignment at tig00004390_pilon:1072186..1072944+

>Gchil6632.t1 ID=Gchil6632.t1|Name=Gchil6632.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00004390_pilon:1072186..1072944+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCATGCTACCGTGGAACTTCCTAAGGTTCAGGTAACTTTGTACGG
ATCAGAAGTGTCAAACTATACTGCTCGATGCAGATATCTTATCAGAAGAA
AATGCCTTCCCGGCGAAATAGTTTCGATCTGCTCACCGAAGGTTTTAGGA
GGCATTAAGACTGAATCTTATCTTGAACTAAATCCGTTGGGGAAAATGCC
ATTGCTTCTAATCAAGAAACCAGGCCAGAAGGATGAGGCTCTTTTTGAGA
GTTCTATTATTTGCGAATACCTTTCAGAAGAGTTTGTAAACCTGAAACCA
AGCTTTAGACCCGTTTCTCCGGAAGCTCGTGCAAAAGCAAGACTTATTGC
AAACTTGTTAGATCTCTACGTTGGACCTCACCATTCGTATATGTACAAAA
AGCTGGAAGGAGATCGGGCAACTGGCGCCCGAAAGATGATGGAAGGGTTC
GACGCTATCGAGCACGTGCTAGATCCCAGGGGACCGTATGCCACTGGAAA
GACCCTTTCGATAGCGGATTGTTGTCTATTAGGAAACTTCCCGTTTTACG
ATTACATGCTCCCAACTTTCTTTGGCTGGAAACCCACCGACGGCCGCCCA
AGACTGAAAGCCTGGCGGAAGCATATGATTAATGAATCTCCAGCAGCACG
AGAAACCTACACTGAAGTTTTCAATGCTCTCCAGATATGGTGGGACAATG
ATCGCTGGGTGAATCTTGGTATGGAAGCACTTACCACGCGCCCGTCTCTT
CCATTCTAA