Gchil3943.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3943.t1
Unique NameGchil3943.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:1571957..1573040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3943Gchil3943Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 1571957..1573040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3943.t1Gchil3943.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 1571957..1573040 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3943.t1.start1Gchil3943.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 1571957..1571959 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3943.t1.CDS1Gchil3943.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1571957..1572759 +
Gchil3943.t1.CDS2Gchil3943.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 1572863..1573040 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3943.t1.exon1Gchil3943.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1571957..1572759 +
Gchil3943.t1.exon2Gchil3943.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 1572863..1573040 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3943.t1.intron1Gchil3943.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 1572760..1572862 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3943.t1.stop1Gchil3943.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 1573038..1573040 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3943.t1 ID=Gchil3943.t1|Name=Gchil3943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=327bp
MRGSSSSIVSPETEYGGRDFVRKPDAFRRKSVDTSGDLGLLAVPPSTAMN
KTKCRSAVTYWSRVIEFFTQPSVFSYLLFGLLFHIVFEQFSAQFSILNIH
KRRQDEALVPRYSNSFIPLSLPKEPNITLLTTGFEGYSPARQKELYLVAF
RNINLGFQQYHRLCDPRCAHIHSTDTKTSFKNMKGQVTYRHLFEEANKFI
GSIVVIANADIYFDHSIYCAGLLHERAVLALSRHPSPDCISSARGPSGRE
PLDFCGGYDPKFAASHDGPPVMMSLTHVREYICFTNTVVTKGPRVQKKEL
RVLNGGACSGQQKNGDTGVVLGFAKI*
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spliced messenger RNA

>Gchil3943.t1 ID=Gchil3943.t1|Name=Gchil3943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000010_pilon:1571957..1573040+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGTTCATCGAGCTCGATCGTCAGCCCTGAAACGGAATATGGTGG
ACGAGACTTTGTGAGAAAACCAGATGCGTTCCGAAGGAAATCAGTGGATA
CCAGCGGAGATCTAGGACTTCTTGCAGTTCCACCGTCAACTGCAATGAAT
AAGACCAAGTGCAGGAGTGCTGTGACCTATTGGAGTCGAGTCATAGAATT
TTTTACCCAGCCTTCAGTTTTTTCGTATCTTTTGTTTGGGCTTCTCTTTC
ACATTGTTTTCGAGCAATTCTCTGCTCAGTTCAGTATACTAAATATCCAC
AAGCGCCGTCAGGACGAAGCTCTAGTGCCACGCTACTCAAACTCATTCAT
TCCCCTAAGTTTACCCAAAGAGCCCAATATTACTTTGTTGACAACAGGCT
TCGAGGGATACTCCCCAGCTCGACAGAAGGAATTATATCTGGTGGCGTTT
CGCAACATCAATCTTGGATTTCAGCAATACCACCGTCTCTGTGATCCACG
ATGCGCACATATTCACTCGACGGATACGAAGACCTCTTTCAAAAATATGA
AGGGTCAGGTGACATATCGCCACCTCTTCGAAGAGGCAAACAAGTTCATT
GGGTCTATAGTGGTTATCGCGAACGCTGATATATACTTTGACCACTCCAT
TTATTGTGCAGGTCTCCTCCACGAAAGAGCAGTGTTGGCTCTCTCAAGAC
ATCCGTCTCCTGATTGCATTTCCTCTGCTCGGGGTCCCTCAGGACGAGAA
CCTTTGGACTTCTGCGGAGGGTATGACCCGAAGTTTGCGGCTAGTCATGA
CGGACCGCCGGTTATGATGTCCTTAACCCATGTGAGAGAATACATTTGTT
TCACCAACACTGTGGTAACGAAAGGGCCTCGAGTGCAAAAAAAAGAGTTA
CGAGTCCTAAATGGCGGCGCCTGTTCGGGTCAACAAAAGAATGGGGATAC
GGGAGTAGTTCTTGGATTCGCAAAGATTTGA
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protein sequence of Gchil3943.t1

>Gchil3943.t1 ID=Gchil3943.t1|Name=Gchil3943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=327bp
MRGSSSSIVSPETEYGGRDFVRKPDAFRRKSVDTSGDLGLLAVPPSTAMN
KTKCRSAVTYWSRVIEFFTQPSVFSYLLFGLLFHIVFEQFSAQFSILNIH
KRRQDEALVPRYSNSFIPLSLPKEPNITLLTTGFEGYSPARQKELYLVAF
RNINLGFQQYHRLCDPRCAHIHSTDTKTSFKNMKGQVTYRHLFEEANKFI
GSIVVIANADIYFDHSIYCAGLLHERAVLALSRHPSPDCISSARGPSGRE
PLDFCGGYDPKFAASHDGPPVMMSLTHVREYICFTNTVVTKGPRVQKKEL
RVLNGGACSGQQKNGDTGVVLGFAKI*
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mRNA from alignment at tig00000010_pilon:1571957..1573040+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3943.t1 ID=Gchil3943.t1|Name=Gchil3943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1084bp|location=Sequence derived from alignment at tig00000010_pilon:1571957..1573040+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGGTTCATCGAGCTCGATCGTCAGCCCTGAAACGGAATATGGTGG
ACGAGACTTTGTGAGAAAACCAGATGCGTTCCGAAGGAAATCAGTGGATA
CCAGCGGAGATCTAGGACTTCTTGCAGTTCCACCGTCAACTGCAATGAAT
AAGACCAAGTGCAGGAGTGCTGTGACCTATTGGAGTCGAGTCATAGAATT
TTTTACCCAGCCTTCAGTTTTTTCGTATCTTTTGTTTGGGCTTCTCTTTC
ACATTGTTTTCGAGCAATTCTCTGCTCAGTTCAGTATACTAAATATCCAC
AAGCGCCGTCAGGACGAAGCTCTAGTGCCACGCTACTCAAACTCATTCAT
TCCCCTAAGTTTACCCAAAGAGCCCAATATTACTTTGTTGACAACAGGCT
TCGAGGGATACTCCCCAGCTCGACAGAAGGAATTATATCTGGTGGCGTTT
CGCAACATCAATCTTGGATTTCAGCAATACCACCGTCTCTGTGATCCACG
ATGCGCACATATTCACTCGACGGATACGAAGACCTCTTTCAAAAATATGA
AGGGTCAGGTGACATATCGCCACCTCTTCGAAGAGGCAAACAAGTTCATT
GGGTCTATAGTGGTTATCGCGAACGCTGATATATACTTTGACCACTCCAT
TTATTGTGCAGGTCTCCTCCACGAAAGAGCAGTGTTGGCTCTCTCAAGAC
ATCCGTCTCCTGATTGCATTTCCTCTGCTCGGGGTCCCTCAGGACGAGAA
CCTTTGGACTTCTGCGGAGGGTATGACCCGAAGTTTGCGGCTAGTCATGA
CGGGTTCGTGTTTATACCACCTGTACCGCAACTAGTATTAGACGGGTTAG
AAGGCTTACCGGTTAATGAATTTGGGGCTGAGAATGTGGTGATTCACATG
ATGCAGACCGCCGGTTATGATGTCCTTAACCCATGTGAGAGAATACATTT
GTTTCACCAACACTGTGGTAACGAAAGGGCCTCGAGTGCAAAAAAAAGAG
TTACGAGTCCTAAATGGCGGCGCCTGTTCGGGTCAACAAAAGAATGGGGA
TACGGGAGTAGTTCTTGGATTCGCAAAGATTTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:1571957..1573040+

>Gchil3943.t1 ID=Gchil3943.t1|Name=Gchil3943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00000010_pilon:1571957..1573040+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGGTTCATCGAGCTCGATCGTCAGCCCTGAAACGGAATATGGTGG
ACGAGACTTTGTGAGAAAACCAGATGCGTTCCGAAGGAAATCAGTGGATA
CCAGCGGAGATCTAGGACTTCTTGCAGTTCCACCGTCAACTGCAATGAAT
AAGACCAAGTGCAGGAGTGCTGTGACCTATTGGAGTCGAGTCATAGAATT
TTTTACCCAGCCTTCAGTTTTTTCGTATCTTTTGTTTGGGCTTCTCTTTC
ACATTGTTTTCGAGCAATTCTCTGCTCAGTTCAGTATACTAAATATCCAC
AAGCGCCGTCAGGACGAAGCTCTAGTGCCACGCTACTCAAACTCATTCAT
TCCCCTAAGTTTACCCAAAGAGCCCAATATTACTTTGTTGACAACAGGCT
TCGAGGGATACTCCCCAGCTCGACAGAAGGAATTATATCTGGTGGCGTTT
CGCAACATCAATCTTGGATTTCAGCAATACCACCGTCTCTGTGATCCACG
ATGCGCACATATTCACTCGACGGATACGAAGACCTCTTTCAAAAATATGA
AGGGTCAGGTGACATATCGCCACCTCTTCGAAGAGGCAAACAAGTTCATT
GGGTCTATAGTGGTTATCGCGAACGCTGATATATACTTTGACCACTCCAT
TTATTGTGCAGGTCTCCTCCACGAAAGAGCAGTGTTGGCTCTCTCAAGAC
ATCCGTCTCCTGATTGCATTTCCTCTGCTCGGGGTCCCTCAGGACGAGAA
CCTTTGGACTTCTGCGGAGGGTATGACCCGAAGTTTGCGGCTAGTCATGA
CGGACCGCCGGTTATGATGTCCTTAACCCATGTGAGAGAATACATTTGTT
TCACCAACACTGTGGTAACGAAAGGGCCTCGAGTGCAAAAAAAAGAGTTA
CGAGTCCTAAATGGCGGCGCCTGTTCGGGTCAACAAAAGAATGGGGATAC
GGGAGTAGTTCTTGGATTCGCAAAGATTTGA
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