Gchil6531.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6531.t1
Unique NameGchil6531.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:403982..405799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706909.1
Preferred nameASMTL
PFAMsDimerisation2,Maf,Methyltransf_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01868,ko:K06287
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue4.52e-50
EggNOG OGsCOG0424@1|root,KOG1509@2759|Eukaryota
EC6.1.1.3
Descriptionnucleoside-triphosphate diphosphatase activity
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6531Gchil6531Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 403982..405799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6531.t1Gchil6531.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 403982..405799 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6531.t1.stop1Gchil6531.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 403982..403984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6531.t1.CDS1Gchil6531.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 403982..404769 -
Gchil6531.t1.CDS2Gchil6531.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 404828..404969 -
Gchil6531.t1.CDS3Gchil6531.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 405230..405799 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6531.t1.exon1Gchil6531.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 403982..404769 -
Gchil6531.t1.exon2Gchil6531.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 404828..404969 -
Gchil6531.t1.exon3Gchil6531.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 405230..405799 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6531.t1.intron1Gchil6531.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 404770..404827 -
Gchil6531.t1.intron2Gchil6531.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 404970..405229 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6531.t1.start1Gchil6531.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 405797..405799 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6531.t1 ID=Gchil6531.t1|Name=Gchil6531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=500bp
MIIDLLPLLRQKRVVLASQSPRRREILKLIGLEFESEASSFAEDLDKACF
ENPACYAKKTAEEKTLDVWRKREKDVDLVIGSDTIVVSEGKILEKPKSEA
DALRMLRSLSGRWHNVVTGVAFVCKGELRSFCEEANVCFDNLTDDMISAY
VKTGEPMDKAGAYGIQGRGGAFVKKIDGCYFCVMGLPMNANFLTASSGCK
MDEHPSLYLDQQYHIEIVMKNATRQTFAPLITPRLSAKFSLLNVLEVWII
LFTIRLTGSCRELQLISKMSSTSSTTRIALRSLGRGAAAGRKHQKVSRSA
GRGQYAVVRSAQPAKPRTDLGRGVTNRLAQLNRQPRHSSPQGHAGVGRGE
TRSATPRSSLAQSVLRSRGEQRENRATMSLKRGNEGARGPRRTEGARRIE
DWYSSSVRKEALESMKDLSRSLAETQAETQRPFAWADFESVVEQLPDQHW
AEPFVHGVVRNLEANPAVDGKEKERILGSVLQILSDLSSENERYQDAEG*
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spliced messenger RNA

>Gchil6531.t1 ID=Gchil6531.t1|Name=Gchil6531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00004390_pilon:403982..405799- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTATTGATCTTCTACCGCTCCTGAGACAAAAGCGCGTGGTTTTGGC
GAGTCAGTCTCCTCGTCGCCGAGAAATTCTGAAGCTAATTGGATTGGAGT
TTGAATCGGAAGCGTCGTCTTTCGCGGAAGATTTGGATAAGGCATGTTTT
GAGAACCCGGCTTGCTACGCGAAAAAAACCGCAGAAGAGAAGACCCTGGA
CGTATGGAGAAAGCGCGAGAAGGACGTTGATCTGGTGATCGGTTCTGATA
CAATCGTGGTCTCGGAAGGCAAAATATTAGAAAAGCCGAAGTCTGAAGCG
GATGCGCTTCGAATGCTAAGGAGTTTAAGCGGGCGATGGCACAACGTTGT
CACAGGCGTAGCCTTTGTGTGCAAAGGGGAGCTCAGAAGTTTTTGTGAAG
AAGCAAATGTATGTTTTGACAATCTGACGGATGATATGATCTCTGCATAT
GTAAAGACTGGAGAGCCAATGGACAAAGCAGGGGCGTATGGAATTCAAGG
GCGGGGTGGTGCTTTCGTCAAAAAGATCGATGGATGCTACTTTTGTGTTA
TGGGTTTGCCAATGAATGCAAATTTTCTCACCGCCAGCAGTGGATGTAAG
ATGGATGAGCACCCATCACTCTATTTGGACCAACAATACCACATTGAAAT
TGTGATGAAAAATGCCACTAGACAAACTTTTGCGCCTCTGATCACCCCAC
GCCTGTCGGCCAAATTCTCTCTACTCAATGTGCTTGAGGTTTGGATAATA
CTATTCACCATTCGTCTCACAGGAAGTTGCCGTGAACTTCAGCTGATATC
GAAGATGAGTTCAACCAGTTCAACAACGCGAATCGCACTTCGAAGCCTGG
GACGCGGAGCGGCTGCAGGCAGGAAGCATCAAAAGGTATCAAGATCAGCT
GGTCGTGGACAGTATGCAGTTGTTCGATCAGCCCAGCCTGCAAAACCGCG
GACTGATCTCGGTCGTGGCGTAACAAATCGACTGGCTCAATTGAACCGCC
AACCTCGCCATTCTTCCCCTCAAGGCCATGCAGGTGTGGGTCGAGGCGAG
ACTCGTTCGGCCACTCCGCGAAGCTCTTTGGCACAGTCAGTTCTTCGCAG
TCGCGGGGAGCAGCGAGAGAATAGAGCTACAATGTCATTGAAGCGGGGGA
ATGAAGGAGCGCGAGGACCGAGGCGTACAGAAGGAGCCCGTAGAATTGAA
GATTGGTATTCGTCTTCTGTACGGAAAGAAGCGCTAGAAAGTATGAAGGA
TCTTTCTCGATCCCTTGCTGAAACACAGGCTGAGACGCAGCGCCCGTTTG
CGTGGGCAGACTTTGAAAGTGTGGTTGAGCAGCTGCCGGACCAACATTGG
GCAGAACCTTTTGTGCACGGAGTGGTAAGGAATTTGGAAGCCAATCCAGC
TGTCGATGGAAAGGAGAAGGAACGAATATTGGGAAGCGTTCTGCAGATAT
TGAGTGATCTATCCTCGGAAAATGAGCGATACCAGGACGCCGAAGGATAG
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protein sequence of Gchil6531.t1

>Gchil6531.t1 ID=Gchil6531.t1|Name=Gchil6531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=500bp
MIIDLLPLLRQKRVVLASQSPRRREILKLIGLEFESEASSFAEDLDKACF
ENPACYAKKTAEEKTLDVWRKREKDVDLVIGSDTIVVSEGKILEKPKSEA
DALRMLRSLSGRWHNVVTGVAFVCKGELRSFCEEANVCFDNLTDDMISAY
VKTGEPMDKAGAYGIQGRGGAFVKKIDGCYFCVMGLPMNANFLTASSGCK
MDEHPSLYLDQQYHIEIVMKNATRQTFAPLITPRLSAKFSLLNVLEVWII
LFTIRLTGSCRELQLISKMSSTSSTTRIALRSLGRGAAAGRKHQKVSRSA
GRGQYAVVRSAQPAKPRTDLGRGVTNRLAQLNRQPRHSSPQGHAGVGRGE
TRSATPRSSLAQSVLRSRGEQRENRATMSLKRGNEGARGPRRTEGARRIE
DWYSSSVRKEALESMKDLSRSLAETQAETQRPFAWADFESVVEQLPDQHW
AEPFVHGVVRNLEANPAVDGKEKERILGSVLQILSDLSSENERYQDAEG*
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mRNA from alignment at tig00004390_pilon:403982..405799-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6531.t1 ID=Gchil6531.t1|Name=Gchil6531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1818bp|location=Sequence derived from alignment at tig00004390_pilon:403982..405799- (Gracilaria chilensis NLEC103_M9 male)
ATGATTATTGATCTTCTACCGCTCCTGAGACAAAAGCGCGTGGTTTTGGC
GAGTCAGTCTCCTCGTCGCCGAGAAATTCTGAAGCTAATTGGATTGGAGT
TTGAATCGGAAGCGTCGTCTTTCGCGGAAGATTTGGATAAGGCATGTTTT
GAGAACCCGGCTTGCTACGCGAAAAAAACCGCAGAAGAGAAGACCCTGGA
CGTATGGAGAAAGCGCGAGAAGGACGTTGATCTGGTGATCGGTTCTGATA
CAATCGTGGTCTCGGAAGGCAAAATATTAGAAAAGCCGAAGTCTGAAGCG
GATGCGCTTCGAATGCTAAGGAGTTTAAGCGGGCGATGGCACAACGTTGT
CACAGGCGTAGCCTTTGTGTGCAAAGGGGAGCTCAGAAGTTTTTGTGAAG
AAGCAAATGTATGTTTTGACAATCTGACGGATGATATGATCTCTGCATAT
GTAAAGACTGGAGAGCCAATGGACAAAGCAGGGGCGTATGGAATTCAAGG
GCGGGGTGGTGCTTTCGTCAAAAAGATCGATGGATGCTACTTTTGTGTTA
TGGGTTTGCCAATGAATGCAGTCAGTAGAGAGATTCGAAAACTTGTTGAA
GACGGTTTATTGTGACTATTTAGAAACTTCCACTTAAAATATTGTCATCC
ATGGCCAACTTGGTGCTTTGATGCACAGTCACTGCGATTATCCCTGTTCA
ACATCGTGCTTCTCCATGCGCTTAGGCGCATTACTTTCTCACTTGTTCCA
TGCAATACTTGTCGTTTCTATCGTAAAATGACAAGGCAAGCACAATGCAT
AAAGGATCTTGTCGAACCGTATCTGTGTAGAATTTTCTCACCGCCAGCAG
TGGATGTAAGATGGATGAGCACCCATCACTCTATTTGGACCAACAATACC
ACATTGAAATTGTGATGAAAAATGCCACTAGACAAACTTTTGCGCCTCTG
ATCACCCCACGCCTGTCGGCCAGTATGTTTGGCACTACCCTCTACTGTAG
TTGCGACTGTGACAATTTGTTTTGACCCAGAATTCTCTCTACTCAATGTG
CTTGAGGTTTGGATAATACTATTCACCATTCGTCTCACAGGAAGTTGCCG
TGAACTTCAGCTGATATCGAAGATGAGTTCAACCAGTTCAACAACGCGAA
TCGCACTTCGAAGCCTGGGACGCGGAGCGGCTGCAGGCAGGAAGCATCAA
AAGGTATCAAGATCAGCTGGTCGTGGACAGTATGCAGTTGTTCGATCAGC
CCAGCCTGCAAAACCGCGGACTGATCTCGGTCGTGGCGTAACAAATCGAC
TGGCTCAATTGAACCGCCAACCTCGCCATTCTTCCCCTCAAGGCCATGCA
GGTGTGGGTCGAGGCGAGACTCGTTCGGCCACTCCGCGAAGCTCTTTGGC
ACAGTCAGTTCTTCGCAGTCGCGGGGAGCAGCGAGAGAATAGAGCTACAA
TGTCATTGAAGCGGGGGAATGAAGGAGCGCGAGGACCGAGGCGTACAGAA
GGAGCCCGTAGAATTGAAGATTGGTATTCGTCTTCTGTACGGAAAGAAGC
GCTAGAAAGTATGAAGGATCTTTCTCGATCCCTTGCTGAAACACAGGCTG
AGACGCAGCGCCCGTTTGCGTGGGCAGACTTTGAAAGTGTGGTTGAGCAG
CTGCCGGACCAACATTGGGCAGAACCTTTTGTGCACGGAGTGGTAAGGAA
TTTGGAAGCCAATCCAGCTGTCGATGGAAAGGAGAAGGAACGAATATTGG
GAAGCGTTCTGCAGATATTGAGTGATCTATCCTCGGAAAATGAGCGATAC
CAGGACGCCGAAGGATAG
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Coding sequence (CDS) from alignment at tig00004390_pilon:403982..405799-

>Gchil6531.t1 ID=Gchil6531.t1|Name=Gchil6531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1500bp|location=Sequence derived from alignment at tig00004390_pilon:403982..405799- (Gracilaria chilensis NLEC103_M9 male)
ATGATTATTGATCTTCTACCGCTCCTGAGACAAAAGCGCGTGGTTTTGGC
GAGTCAGTCTCCTCGTCGCCGAGAAATTCTGAAGCTAATTGGATTGGAGT
TTGAATCGGAAGCGTCGTCTTTCGCGGAAGATTTGGATAAGGCATGTTTT
GAGAACCCGGCTTGCTACGCGAAAAAAACCGCAGAAGAGAAGACCCTGGA
CGTATGGAGAAAGCGCGAGAAGGACGTTGATCTGGTGATCGGTTCTGATA
CAATCGTGGTCTCGGAAGGCAAAATATTAGAAAAGCCGAAGTCTGAAGCG
GATGCGCTTCGAATGCTAAGGAGTTTAAGCGGGCGATGGCACAACGTTGT
CACAGGCGTAGCCTTTGTGTGCAAAGGGGAGCTCAGAAGTTTTTGTGAAG
AAGCAAATGTATGTTTTGACAATCTGACGGATGATATGATCTCTGCATAT
GTAAAGACTGGAGAGCCAATGGACAAAGCAGGGGCGTATGGAATTCAAGG
GCGGGGTGGTGCTTTCGTCAAAAAGATCGATGGATGCTACTTTTGTGTTA
TGGGTTTGCCAATGAATGCAAATTTTCTCACCGCCAGCAGTGGATGTAAG
ATGGATGAGCACCCATCACTCTATTTGGACCAACAATACCACATTGAAAT
TGTGATGAAAAATGCCACTAGACAAACTTTTGCGCCTCTGATCACCCCAC
GCCTGTCGGCCAAATTCTCTCTACTCAATGTGCTTGAGGTTTGGATAATA
CTATTCACCATTCGTCTCACAGGAAGTTGCCGTGAACTTCAGCTGATATC
GAAGATGAGTTCAACCAGTTCAACAACGCGAATCGCACTTCGAAGCCTGG
GACGCGGAGCGGCTGCAGGCAGGAAGCATCAAAAGGTATCAAGATCAGCT
GGTCGTGGACAGTATGCAGTTGTTCGATCAGCCCAGCCTGCAAAACCGCG
GACTGATCTCGGTCGTGGCGTAACAAATCGACTGGCTCAATTGAACCGCC
AACCTCGCCATTCTTCCCCTCAAGGCCATGCAGGTGTGGGTCGAGGCGAG
ACTCGTTCGGCCACTCCGCGAAGCTCTTTGGCACAGTCAGTTCTTCGCAG
TCGCGGGGAGCAGCGAGAGAATAGAGCTACAATGTCATTGAAGCGGGGGA
ATGAAGGAGCGCGAGGACCGAGGCGTACAGAAGGAGCCCGTAGAATTGAA
GATTGGTATTCGTCTTCTGTACGGAAAGAAGCGCTAGAAAGTATGAAGGA
TCTTTCTCGATCCCTTGCTGAAACACAGGCTGAGACGCAGCGCCCGTTTG
CGTGGGCAGACTTTGAAAGTGTGGTTGAGCAGCTGCCGGACCAACATTGG
GCAGAACCTTTTGTGCACGGAGTGGTAAGGAATTTGGAAGCCAATCCAGC
TGTCGATGGAAAGGAGAAGGAACGAATATTGGGAAGCGTTCTGCAGATAT
TGAGTGATCTATCCTCGGAAAATGAGCGATACCAGGACGCCGAAGGATAG
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