|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 88036.EFJ25043 |
| Preferred name | CTU1 |
| PFAMs | ATP_bind_3,zn-ribbon_14 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K14168 |
| KEGG Pathway | ko04122,map04122 |
| Evalue | 5.98e-129 |
| EggNOG OGs | COG0037@1|root,KOG2840@2759|Eukaryota,37I2P@33090|Viridiplantae,3GFWI@35493|Streptophyta |
| Description | Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position |
| COG category | J |
| BRITE | ko00000,ko00001,ko01000,ko03016 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil6568.t1 ID=Gchil6568.t1|Name=Gchil6568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp MVRKCSSCEKENASVKRPKTGKAVCKECFFRLFEDEVHETIVSNNIFSPG ERVAIGASGGKDSTVLAYVLSLLNRRHSYRLDLFLLSVDEGISGYRDDSL AAVQRNKIEYGLPLLVVDYKQLYGWTMDQIVNVIGRKSNCTFCGVFRRQA LDRGATILKADKVATGHNADDIAETIFLNFLRGDFPRLSRCVDAVTGRDS SLPRVKPFKYTYEKEIVMYAYFRKLDYFATECVYSPNAYRGHARQFLKDL EAERPSTSTVLISQAFRGRAFGSISSNDVAKRVSVGEDGSIYLAGVTTSH DDDHDAWGDVQSGELTGKRDIFIAKLSITGELQWVKRTGSNQNDDLNDFK LANDALYLCGSTMGNFGRPVNGSSDAYIMKFTLNGEKAWPKPFQFGSKGE DICHAIDIDESGRVYAVGSTNGRLYGTSKPEPGSFHHFITKLEELPGSPS GLRTVVGRQRGSMGNSSANQVAVVDDLLYVMTLSSRRQSRGETHATYLNI IDREALFLHKLHMLKSRDGVNFQGVRMSTSIATKNAYVIGFTLLDDMRKK YDVLKFNYSQNYKQGGIEWNTLLGPVSLSFKMLQFSTDENNKPGRNDSIV MEHQLPSIVVDEKNESVYVAGTEDGFYRTSSAGDEGLVVAPFYKLNTTSG EIVERWHRSTNIPHDRQELTDIALDPLRTVVYTGAWWLGAEAKSSVLLGS FGSTIRSSIADEWSTKPSFIQDGSQRNDSSVSTSTGSGRAGSIIMLTLAC IGVIVTAVLSVGSRLKKSRPKNFRSVDSQTDELDNISIDQRSVIKFPPGS TDRLIGGSSGPQ* back to topspliced messenger RNA >Gchil6568.t1 ID=Gchil6568.t1|Name=Gchil6568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2439bp|location=Sequence derived from alignment at tig00004390_pilon:652806..655985+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGTTCGAAAGTGCTCTTCTTGCGAGAAGGAAAATGCTTCTGTAAAACG TCCCAAAACCGGAAAGGCGGTTTGTAAAGAATGCTTTTTCAGGCTCTTTG AAGATGAGGTTCATGAGACCATAGTATCTAACAATATTTTTTCTCCAGGA GAACGAGTTGCCATTGGGGCATCAGGTGGCAAGGATTCCACAGTTTTGGC TTACGTACTTTCTCTCTTGAATCGTCGCCACTCGTATCGACTAGACCTTT TTCTGCTTAGTGTAGATGAAGGCATATCTGGTTATCGCGATGACAGTCTG GCTGCCGTACAAAGAAACAAAATCGAGTATGGTCTGCCGCTTCTGGTTGT TGACTATAAGCAACTATATGGTTGGACTATGGACCAGATTGTAAATGTAA TTGGCCGTAAGTCAAATTGTACGTTTTGTGGAGTGTTTCGTCGTCAGGCA CTTGACAGAGGGGCTACAATCCTGAAAGCTGATAAAGTTGCTACTGGTCA CAATGCCGATGACATAGCCGAAACGATATTTCTGAACTTTCTGCGAGGTG ATTTTCCTAGATTATCCCGATGCGTAGACGCTGTGACTGGGCGTGATAGC TCGCTTCCGCGTGTGAAGCCGTTCAAGTACACCTATGAAAAGGAAATCGT CATGTATGCATATTTCAGGAAACTAGACTATTTTGCGACCGAATGTGTGT ATTCTCCAAATGCCTATCGTGGACATGCCCGGCAGTTCTTAAAGGATCTG GAAGCGGAGAGACCCTCAACATCCACAGTGCTGATCAGTCAAGCTTTTAG AGGACGGGCATTTGGTTCGATTTCGTCCAATGATGTTGCGAAAAGAGTAT CTGTTGGAGAGGATGGGTCAATATACTTAGCAGGAGTAACTACGTCACAC GACGACGATCACGATGCATGGGGGGATGTTCAATCAGGGGAGCTGACTGG CAAAAGAGATATATTCATAGCCAAGCTTTCCATCACTGGCGAACTACAAT GGGTGAAGCGAACAGGTTCAAACCAAAATGACGATTTGAATGATTTTAAG CTAGCAAACGACGCGTTGTATTTATGCGGATCGACCATGGGGAATTTTGG AAGACCCGTAAATGGTTCGAGCGATGCCTACATTATGAAGTTTACGCTGA ACGGTGAAAAGGCATGGCCTAAACCTTTCCAGTTTGGGTCAAAAGGTGAA GATATTTGTCATGCGATCGATATTGATGAGTCTGGTAGGGTGTACGCCGT AGGATCTACAAACGGACGATTATATGGAACATCTAAACCTGAACCCGGGA GTTTTCATCACTTTATCACAAAACTTGAAGAATTGCCTGGCTCCCCATCC GGCTTGCGAACTGTTGTTGGTCGTCAGAGAGGTTCTATGGGGAACAGTTC TGCGAACCAAGTCGCTGTGGTTGATGATTTGTTGTACGTCATGACTTTGT CTAGTAGACGCCAATCGCGAGGTGAAACGCATGCTACGTATTTGAACATC ATAGACCGCGAGGCTCTGTTTCTTCATAAGTTACATATGTTGAAAAGTCG CGATGGTGTCAATTTTCAAGGGGTGCGAATGTCGACTTCGATTGCAACTA AGAACGCTTACGTTATAGGGTTCACACTCCTTGACGACATGCGTAAGAAA TACGACGTCCTGAAGTTTAACTATTCGCAGAACTACAAGCAGGGAGGAAT AGAATGGAACACTTTGCTGGGGCCTGTGTCTCTGTCTTTCAAGATGTTAC AGTTTTCAACTGACGAGAACAACAAACCTGGCAGGAACGATTCCATCGTG ATGGAACATCAGTTACCTTCCATTGTTGTGGATGAAAAGAACGAAAGTGT TTACGTTGCTGGGACGGAAGATGGATTCTATCGAACGAGTAGTGCAGGAG ATGAGGGCTTAGTGGTCGCCCCTTTTTACAAGCTCAATACAACGAGTGGA GAAATCGTGGAACGATGGCACAGGTCTACAAATATACCTCACGACCGTCA AGAATTGACAGATATTGCTTTGGATCCACTGAGGACTGTTGTGTACACAG GTGCTTGGTGGCTTGGTGCGGAAGCAAAGTCTAGTGTTCTGCTTGGTTCA TTTGGGTCTACCATTCGTTCATCAATTGCGGACGAGTGGAGTACTAAGCC ATCGTTCATCCAGGACGGTAGCCAGAGAAATGATAGTTCCGTGTCGACCT CAACTGGTTCAGGTAGAGCAGGAAGCATTATAATGCTCACGCTCGCATGT ATTGGTGTTATTGTTACCGCGGTTTTGTCGGTTGGATCTCGTTTGAAAAA GTCTCGCCCAAAGAACTTTAGATCCGTGGACTCTCAAACAGATGAGCTTG ACAACATCAGCATTGACCAGCGTTCAGTGATCAAGTTCCCTCCCGGCTCG ACTGACAGGCTGATTGGTGGTAGCTCGGGTCCACAGTAA back to topprotein sequence of Gchil6568.t1 >Gchil6568.t1 ID=Gchil6568.t1|Name=Gchil6568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=813bp
MVRKCSSCEKENASVKRPKTGKAVCKECFFRLFEDEVHETIVSNNIFSPG ERVAIGASGGKDSTVLAYVLSLLNRRHSYRLDLFLLSVDEGISGYRDDSL AAVQRNKIEYGLPLLVVDYKQLYGWTMDQIVNVIGRKSNCTFCGVFRRQA LDRGATILKADKVATGHNADDIAETIFLNFLRGDFPRLSRCVDAVTGRDS SLPRVKPFKYTYEKEIVMYAYFRKLDYFATECVYSPNAYRGHARQFLKDL EAERPSTSTVLISQAFRGRAFGSISSNDVAKRVSVGEDGSIYLAGVTTSH DDDHDAWGDVQSGELTGKRDIFIAKLSITGELQWVKRTGSNQNDDLNDFK LANDALYLCGSTMGNFGRPVNGSSDAYIMKFTLNGEKAWPKPFQFGSKGE DICHAIDIDESGRVYAVGSTNGRLYGTSKPEPGSFHHFITKLEELPGSPS GLRTVVGRQRGSMGNSSANQVAVVDDLLYVMTLSSRRQSRGETHATYLNI IDREALFLHKLHMLKSRDGVNFQGVRMSTSIATKNAYVIGFTLLDDMRKK YDVLKFNYSQNYKQGGIEWNTLLGPVSLSFKMLQFSTDENNKPGRNDSIV MEHQLPSIVVDEKNESVYVAGTEDGFYRTSSAGDEGLVVAPFYKLNTTSG EIVERWHRSTNIPHDRQELTDIALDPLRTVVYTGAWWLGAEAKSSVLLGS FGSTIRSSIADEWSTKPSFIQDGSQRNDSSVSTSTGSGRAGSIIMLTLAC IGVIVTAVLSVGSRLKKSRPKNFRSVDSQTDELDNISIDQRSVIKFPPGS TDRLIGGSSGPQ* back to topmRNA from alignment at tig00004390_pilon:652806..655985+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil6568.t1 ID=Gchil6568.t1|Name=Gchil6568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=3180bp|location=Sequence derived from alignment at tig00004390_pilon:652806..655985+ (Gracilaria chilensis NLEC103_M9 male) ATGGTTCGAAAGTGCTCTTCTTGCGAGAAGGAAAATGCTTCTGTAAAACG
TCCCAAAACCGGAAAGGCGGTTTGTAAAGAATGCTTTTTCAGGCTCTTTG
AAGATGAGGTTCATGAGACCATAGTATCTAACAATATTTTTTCTCCAGGA
GAACGAGTTGCCATTGGGGCATCAGGTGGCAAGGATTCCACAGTTTTGGC
TTACGTACTTTCTCTCTTGAATCGTCGCCACTCGTATCGACTAGACCTTT
TTCTGCTTAGTGTAGATGAAGGCATATCTGGTTATCGCGATGACAGTCTG
GCTGCCGTACAAAGAAACAAAATCGAGTATGGTCTGCCGCTTCTGGTTGT
TGACTATAAGCAACTATATGGTTGGACTATGGACCAGATTGTAAATGTAA
TTGGCCGTAAGTCAAATTGTACGTTTTGTGGAGTGTTTCGTCGTCAGGCA
CTTGACAGAGGGGCTACAATCCTGAAAGCTGATAAAGTTGCTACTGGTCA
CAATGCCGATGACATAGCCGAAACGATATTTCTGAACTTTCTGCGAGGTG
ATTTTCCTAGATTATCCCGATGCGTAGACGCTGTGACTGGGCGTGATAGC
TCGCTTCCGCGTGTGAAGCCGTTCAAGTACACCTATGAAAAGGAAATCGT
CATGTATGCATATTTCAGGAAACTAGACTATTTTGCGACCGAATGTGTGT
ATTCTCCAAATGCCTATCGTGGACATGCCCGGCAGTTCTTAAAGGATCTG
GAAGCGGAGAGACCCTCAGTAATTGTCGATATAATTCACGCTGCCGAAGA
GTTTGAATTTCCATCCCCTGGTAACTCAGACGTTGTCATGCCAACACAGC
GAAAGTGTGAACGCTGCTCGTATATATCAAGCCAGCGGTTGTGCAAGGCT
TGCGTTCTTACAGATAGTTTGAACAATGGAAAAGCTGTGCGGATTAACCG
TCTTTCTCCGTGTCAGGCTTCCCAAGAAATTTCACCATCGAACACAATAA
GCAGTCCCGTTCCGGATAAGAACAGGGCAGACATTTCATCAACTTCTACT
CTAATTTAATTGCAAGGATAGGCTGGCATGTCACGTCGCATGGACTGTCT
CTACTCTGAAAAGAAGGAGAATGTCCATGCGACGTGATTCTGCGTAAGTT
TTTTCTCACAATCTTGTCTCATGAATACTGATGAACGTGTTCAATTCGAG
ACGGGTTCATTCCATTCTCTTATGTCCTCCGATTGAATTCGTTCGGTCCC
TTTCTTGGTTTGGGTTATGGATTTGGGATCTACGAATACACGGTTGTTTC
TTCTTTGAGCGCTCTATCAAGTATGCACTTCTGATGCACGTATCGACTTA
ACTGCTGAGAACGCAAACCTTGTGCATCTTGATCCTTGGGCGGAAAACTA
CCTTCTTTGTCTGGATTTGTACTTTGACGTACGAGTCACAATGCGGCAAC
ATATCCGGCGGATACACACAATAATCATTGTTTTGGGTCTTTGTGTATTG
AAAACACAGACATCCACAGTGCTGATCAGTCAAGCTTTTAGAGGACGGGC
ATTTGGTTCGATTTCGTCCAATGATGTTGCGAAAAGAGTATCTGTTGGAG
AGGATGGGTCAATATACTTAGCAGGAGTAACTACGTCACACGACGACGAT
CACGATGCATGGGGGGATGTTCAATCAGGGGAGCTGACTGGCAAAAGAGA
TATATTCATAGCCAAGCTTTCCATCACTGGCGAACTACAATGGGTGAAGC
GAACAGGTTCAAACCAAAATGACGATTTGAATGATTTTAAGCTAGCAAAC
GACGCGTTGTATTTATGCGGATCGACCATGGGGAATTTTGGAAGACCCGT
AAATGGTTCGAGCGATGCCTACATTATGAAGTTTACGCTGAACGGTGAAA
AGGCATGGCCTAAACCTTTCCAGTTTGGGTCAAAAGGTGAAGATATTTGT
CATGCGATCGATATTGATGAGTCTGGTAGGGTGTACGCCGTAGGATCTAC
AAACGGACGATTATATGGAACATCTAAACCTGAACCCGGGAGTTTTCATC
ACTTTATCACAAAACTTGAAGAATTGCCTGGCTCCCCATCCGGCTTGCGA
ACTGTTGTTGGTCGTCAGAGAGGTTCTATGGGGAACAGTTCTGCGAACCA
AGTCGCTGTGGTTGATGATTTGTTGTACGTCATGACTTTGTCTAGTAGAC
GCCAATCGCGAGGTGAAACGCATGCTACGTATTTGAACATCATAGACCGC
GAGGCTCTGTTTCTTCATAAGTTACATATGTTGAAAAGTCGCGATGGTGT
CAATTTTCAAGGGGTGCGAATGTCGACTTCGATTGCAACTAAGAACGCTT
ACGTTATAGGGTTCACACTCCTTGACGACATGCGTAAGAAATACGACGTC
CTGAAGTTTAACTATTCGCAGAACTACAAGCAGGGAGGAATAGAATGGAA
CACTTTGCTGGGGCCTGTGTCTCTGTCTTTCAAGATGTTACAGTTTTCAA
CTGACGAGAACAACAAACCTGGCAGGAACGATTCCATCGTGATGGAACAT
CAGTTACCTTCCATTGTTGTGGATGAAAAGAACGAAAGTGTTTACGTTGC
TGGGACGGAAGATGGATTCTATCGAACGAGTAGTGCAGGAGATGAGGGCT
TAGTGGTCGCCCCTTTTTACAAGCTCAATACAACGAGTGGAGAAATCGTG
GAACGATGGCACAGGTCTACAAATATACCTCACGACCGTCAAGAATTGAC
AGATATTGCTTTGGATCCACTGAGGACTGTTGTGTACACAGGTGCTTGGT
GGCTTGGTGCGGAAGCAAAGTCTAGTGTTCTGCTTGGTTCATTTGGGTCT
ACCATTCGTTCATCAATTGCGGACGAGTGGAGTACTAAGCCATCGTTCAT
CCAGGACGGTAGCCAGAGAAATGATAGTTCCGTGTCGACCTCAACTGGTT
CAGGTAGAGCAGGAAGCATTATAATGCTCACGCTCGCATGTATTGGTGTT
ATTGTTACCGCGGTTTTGTCGGTTGGATCTCGTTTGAAAAAGTCTCGCCC
AAAGAACTTTAGATCCGTGGACTCTCAAACAGATGAGCTTGACAACATCA
GCATTGACCAGCGTTCAGTGATCAAGTTCCCTCCCGGCTCGACTGACAGG
CTGATTGGTGGTAGCTCGGGTCCACAGTAA back to topCoding sequence (CDS) from alignment at tig00004390_pilon:652806..655985+ >Gchil6568.t1 ID=Gchil6568.t1|Name=Gchil6568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2439bp|location=Sequence derived from alignment at tig00004390_pilon:652806..655985+ (Gracilaria chilensis NLEC103_M9 male) ATGGTTCGAAAGTGCTCTTCTTGCGAGAAGGAAAATGCTTCTGTAAAACG TCCCAAAACCGGAAAGGCGGTTTGTAAAGAATGCTTTTTCAGGCTCTTTG AAGATGAGGTTCATGAGACCATAGTATCTAACAATATTTTTTCTCCAGGA GAACGAGTTGCCATTGGGGCATCAGGTGGCAAGGATTCCACAGTTTTGGC TTACGTACTTTCTCTCTTGAATCGTCGCCACTCGTATCGACTAGACCTTT TTCTGCTTAGTGTAGATGAAGGCATATCTGGTTATCGCGATGACAGTCTG GCTGCCGTACAAAGAAACAAAATCGAGTATGGTCTGCCGCTTCTGGTTGT TGACTATAAGCAACTATATGGTTGGACTATGGACCAGATTGTAAATGTAA TTGGCCGTAAGTCAAATTGTACGTTTTGTGGAGTGTTTCGTCGTCAGGCA CTTGACAGAGGGGCTACAATCCTGAAAGCTGATAAAGTTGCTACTGGTCA CAATGCCGATGACATAGCCGAAACGATATTTCTGAACTTTCTGCGAGGTG ATTTTCCTAGATTATCCCGATGCGTAGACGCTGTGACTGGGCGTGATAGC TCGCTTCCGCGTGTGAAGCCGTTCAAGTACACCTATGAAAAGGAAATCGT CATGTATGCATATTTCAGGAAACTAGACTATTTTGCGACCGAATGTGTGT ATTCTCCAAATGCCTATCGTGGACATGCCCGGCAGTTCTTAAAGGATCTG GAAGCGGAGAGACCCTCAACATCCACAGTGCTGATCAGTCAAGCTTTTAG AGGACGGGCATTTGGTTCGATTTCGTCCAATGATGTTGCGAAAAGAGTAT CTGTTGGAGAGGATGGGTCAATATACTTAGCAGGAGTAACTACGTCACAC GACGACGATCACGATGCATGGGGGGATGTTCAATCAGGGGAGCTGACTGG CAAAAGAGATATATTCATAGCCAAGCTTTCCATCACTGGCGAACTACAAT GGGTGAAGCGAACAGGTTCAAACCAAAATGACGATTTGAATGATTTTAAG CTAGCAAACGACGCGTTGTATTTATGCGGATCGACCATGGGGAATTTTGG AAGACCCGTAAATGGTTCGAGCGATGCCTACATTATGAAGTTTACGCTGA ACGGTGAAAAGGCATGGCCTAAACCTTTCCAGTTTGGGTCAAAAGGTGAA GATATTTGTCATGCGATCGATATTGATGAGTCTGGTAGGGTGTACGCCGT AGGATCTACAAACGGACGATTATATGGAACATCTAAACCTGAACCCGGGA GTTTTCATCACTTTATCACAAAACTTGAAGAATTGCCTGGCTCCCCATCC GGCTTGCGAACTGTTGTTGGTCGTCAGAGAGGTTCTATGGGGAACAGTTC TGCGAACCAAGTCGCTGTGGTTGATGATTTGTTGTACGTCATGACTTTGT CTAGTAGACGCCAATCGCGAGGTGAAACGCATGCTACGTATTTGAACATC ATAGACCGCGAGGCTCTGTTTCTTCATAAGTTACATATGTTGAAAAGTCG CGATGGTGTCAATTTTCAAGGGGTGCGAATGTCGACTTCGATTGCAACTA AGAACGCTTACGTTATAGGGTTCACACTCCTTGACGACATGCGTAAGAAA TACGACGTCCTGAAGTTTAACTATTCGCAGAACTACAAGCAGGGAGGAAT AGAATGGAACACTTTGCTGGGGCCTGTGTCTCTGTCTTTCAAGATGTTAC AGTTTTCAACTGACGAGAACAACAAACCTGGCAGGAACGATTCCATCGTG ATGGAACATCAGTTACCTTCCATTGTTGTGGATGAAAAGAACGAAAGTGT TTACGTTGCTGGGACGGAAGATGGATTCTATCGAACGAGTAGTGCAGGAG ATGAGGGCTTAGTGGTCGCCCCTTTTTACAAGCTCAATACAACGAGTGGA GAAATCGTGGAACGATGGCACAGGTCTACAAATATACCTCACGACCGTCA AGAATTGACAGATATTGCTTTGGATCCACTGAGGACTGTTGTGTACACAG GTGCTTGGTGGCTTGGTGCGGAAGCAAAGTCTAGTGTTCTGCTTGGTTCA TTTGGGTCTACCATTCGTTCATCAATTGCGGACGAGTGGAGTACTAAGCC ATCGTTCATCCAGGACGGTAGCCAGAGAAATGATAGTTCCGTGTCGACCT CAACTGGTTCAGGTAGAGCAGGAAGCATTATAATGCTCACGCTCGCATGT ATTGGTGTTATTGTTACCGCGGTTTTGTCGGTTGGATCTCGTTTGAAAAA GTCTCGCCCAAAGAACTTTAGATCCGTGGACTCTCAAACAGATGAGCTTG ACAACATCAGCATTGACCAGCGTTCAGTGATCAAGTTCCCTCCCGGCTCG ACTGACAGGCTGATTGGTGGTAGCTCGGGTCCACAGTAA back to top
|