Gchil6561.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6561.t1
Unique NameGchil6561.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:632303..633553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6561Gchil6561Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 632303..633553 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6561.t1.start1Gchil6561.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 632303..632305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6561.t1.CDS1Gchil6561.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 632303..633553 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6561.t1.exon1Gchil6561.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 632303..633553 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6561.t1.stop1Gchil6561.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 633551..633553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6561.t1Gchil6561.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 632303..633553 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6561.t1 ID=Gchil6561.t1|Name=Gchil6561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=417bp
MVDNMTTMSSSIWEKLLTAPSTSEAIERASHHSILDIQQTPLPIPFDEMS
PNAQENLRAISRAFEVSLGGIEVQGWNLWTDGARGMDDWQMAILEIKQSR
PRPEEDGAPQSSLTISDSKTLETEKSQAVENEITPASNLAGESEEKKRKH
LLNKSSHGSGTHSSLKVSGNQKKGLDAEVKKNAELIRNWALFSPHTEPSQ
VAIDVLLGSAETSRILQYIVPNGSTPLMRAAVISCFTERIGSSAANVMME
ETIIPYVQILKAPAPREVMTAVVNFCTFHWRAALGLYTHIAHSDQKVNGA
IAELLARVAAGISPEAALSALKEYSRGTWGEDGIRVIEALMAKSKDQPGV
VSAIAPSLEKNVIGMEKSVRFGKLLFTMVKEFPVVENEYEQVLESVAARS
KVFLAKRALSYMKNKK*
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spliced messenger RNA

>Gchil6561.t1 ID=Gchil6561.t1|Name=Gchil6561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00004390_pilon:632303..633553+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGATAACATGACAACAATGTCGTCATCAATTTGGGAAAAATTATT
GACGGCACCGTCTACTTCTGAGGCCATCGAACGAGCGTCACATCACTCTA
TACTGGATATACAACAAACTCCTTTACCCATTCCGTTCGACGAAATGTCT
CCAAACGCTCAAGAGAACCTCAGGGCTATCTCCCGGGCTTTTGAAGTAAG
CCTTGGCGGAATTGAAGTCCAAGGATGGAACCTATGGACAGATGGGGCGC
GTGGCATGGATGATTGGCAGATGGCTATTCTTGAGATCAAGCAAAGCCGA
CCGCGACCGGAAGAAGATGGTGCACCGCAAAGCTCTCTCACTATATCTGA
TTCGAAGACACTGGAAACAGAAAAAAGTCAAGCCGTAGAAAACGAAATCA
CACCAGCTTCGAACCTTGCGGGTGAATCGGAAGAGAAGAAACGAAAACAT
TTATTGAATAAGAGTTCCCATGGTTCTGGGACACATTCATCATTGAAAGT
TAGTGGAAATCAAAAGAAAGGGCTTGATGCAGAGGTGAAGAAGAACGCTG
AACTGATCAGAAATTGGGCCCTTTTTTCTCCTCACACAGAACCGTCTCAG
GTGGCAATTGACGTCTTGCTGGGAAGCGCCGAAACATCTCGTATTCTGCA
ATACATCGTTCCCAATGGTTCGACTCCGTTAATGCGGGCAGCTGTGATAA
GCTGTTTTACGGAAAGGATAGGATCATCTGCGGCGAACGTAATGATGGAA
GAAACGATTATTCCCTACGTGCAGATTTTGAAAGCTCCAGCTCCTCGAGA
AGTTATGACCGCAGTTGTCAACTTCTGTACGTTCCACTGGAGAGCTGCCC
TTGGCTTATACACCCATATCGCGCATAGTGACCAAAAAGTCAATGGGGCG
ATAGCAGAACTACTGGCCAGGGTAGCAGCGGGGATATCTCCCGAGGCTGC
ACTGTCGGCTTTGAAGGAGTATAGTAGAGGTACATGGGGAGAAGATGGGA
TTAGAGTTATCGAAGCATTGATGGCTAAGAGCAAAGATCAACCTGGAGTG
GTCAGTGCGATAGCACCTTCTCTCGAAAAAAACGTAATAGGGATGGAAAA
GAGCGTCCGATTTGGGAAATTACTCTTTACCATGGTTAAAGAATTTCCTG
TGGTCGAAAACGAGTATGAGCAAGTTCTTGAGTCAGTCGCCGCACGTTCA
AAGGTGTTTCTAGCTAAACGGGCGCTGTCGTACATGAAAAACAAGAAGTA
A
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protein sequence of Gchil6561.t1

>Gchil6561.t1 ID=Gchil6561.t1|Name=Gchil6561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=417bp
MVDNMTTMSSSIWEKLLTAPSTSEAIERASHHSILDIQQTPLPIPFDEMS
PNAQENLRAISRAFEVSLGGIEVQGWNLWTDGARGMDDWQMAILEIKQSR
PRPEEDGAPQSSLTISDSKTLETEKSQAVENEITPASNLAGESEEKKRKH
LLNKSSHGSGTHSSLKVSGNQKKGLDAEVKKNAELIRNWALFSPHTEPSQ
VAIDVLLGSAETSRILQYIVPNGSTPLMRAAVISCFTERIGSSAANVMME
ETIIPYVQILKAPAPREVMTAVVNFCTFHWRAALGLYTHIAHSDQKVNGA
IAELLARVAAGISPEAALSALKEYSRGTWGEDGIRVIEALMAKSKDQPGV
VSAIAPSLEKNVIGMEKSVRFGKLLFTMVKEFPVVENEYEQVLESVAARS
KVFLAKRALSYMKNKK*
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mRNA from alignment at tig00004390_pilon:632303..633553+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6561.t1 ID=Gchil6561.t1|Name=Gchil6561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00004390_pilon:632303..633553+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGATAACATGACAACAATGTCGTCATCAATTTGGGAAAAATTATT
GACGGCACCGTCTACTTCTGAGGCCATCGAACGAGCGTCACATCACTCTA
TACTGGATATACAACAAACTCCTTTACCCATTCCGTTCGACGAAATGTCT
CCAAACGCTCAAGAGAACCTCAGGGCTATCTCCCGGGCTTTTGAAGTAAG
CCTTGGCGGAATTGAAGTCCAAGGATGGAACCTATGGACAGATGGGGCGC
GTGGCATGGATGATTGGCAGATGGCTATTCTTGAGATCAAGCAAAGCCGA
CCGCGACCGGAAGAAGATGGTGCACCGCAAAGCTCTCTCACTATATCTGA
TTCGAAGACACTGGAAACAGAAAAAAGTCAAGCCGTAGAAAACGAAATCA
CACCAGCTTCGAACCTTGCGGGTGAATCGGAAGAGAAGAAACGAAAACAT
TTATTGAATAAGAGTTCCCATGGTTCTGGGACACATTCATCATTGAAAGT
TAGTGGAAATCAAAAGAAAGGGCTTGATGCAGAGGTGAAGAAGAACGCTG
AACTGATCAGAAATTGGGCCCTTTTTTCTCCTCACACAGAACCGTCTCAG
GTGGCAATTGACGTCTTGCTGGGAAGCGCCGAAACATCTCGTATTCTGCA
ATACATCGTTCCCAATGGTTCGACTCCGTTAATGCGGGCAGCTGTGATAA
GCTGTTTTACGGAAAGGATAGGATCATCTGCGGCGAACGTAATGATGGAA
GAAACGATTATTCCCTACGTGCAGATTTTGAAAGCTCCAGCTCCTCGAGA
AGTTATGACCGCAGTTGTCAACTTCTGTACGTTCCACTGGAGAGCTGCCC
TTGGCTTATACACCCATATCGCGCATAGTGACCAAAAAGTCAATGGGGCG
ATAGCAGAACTACTGGCCAGGGTAGCAGCGGGGATATCTCCCGAGGCTGC
ACTGTCGGCTTTGAAGGAGTATAGTAGAGGTACATGGGGAGAAGATGGGA
TTAGAGTTATCGAAGCATTGATGGCTAAGAGCAAAGATCAACCTGGAGTG
GTCAGTGCGATAGCACCTTCTCTCGAAAAAAACGTAATAGGGATGGAAAA
GAGCGTCCGATTTGGGAAATTACTCTTTACCATGGTTAAAGAATTTCCTG
TGGTCGAAAACGAGTATGAGCAAGTTCTTGAGTCAGTCGCCGCACGTTCA
AAGGTGTTTCTAGCTAAACGGGCGCTGTCGTACATGAAAAACAAGAAGTA
A
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Coding sequence (CDS) from alignment at tig00004390_pilon:632303..633553+

>Gchil6561.t1 ID=Gchil6561.t1|Name=Gchil6561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00004390_pilon:632303..633553+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGATAACATGACAACAATGTCGTCATCAATTTGGGAAAAATTATT
GACGGCACCGTCTACTTCTGAGGCCATCGAACGAGCGTCACATCACTCTA
TACTGGATATACAACAAACTCCTTTACCCATTCCGTTCGACGAAATGTCT
CCAAACGCTCAAGAGAACCTCAGGGCTATCTCCCGGGCTTTTGAAGTAAG
CCTTGGCGGAATTGAAGTCCAAGGATGGAACCTATGGACAGATGGGGCGC
GTGGCATGGATGATTGGCAGATGGCTATTCTTGAGATCAAGCAAAGCCGA
CCGCGACCGGAAGAAGATGGTGCACCGCAAAGCTCTCTCACTATATCTGA
TTCGAAGACACTGGAAACAGAAAAAAGTCAAGCCGTAGAAAACGAAATCA
CACCAGCTTCGAACCTTGCGGGTGAATCGGAAGAGAAGAAACGAAAACAT
TTATTGAATAAGAGTTCCCATGGTTCTGGGACACATTCATCATTGAAAGT
TAGTGGAAATCAAAAGAAAGGGCTTGATGCAGAGGTGAAGAAGAACGCTG
AACTGATCAGAAATTGGGCCCTTTTTTCTCCTCACACAGAACCGTCTCAG
GTGGCAATTGACGTCTTGCTGGGAAGCGCCGAAACATCTCGTATTCTGCA
ATACATCGTTCCCAATGGTTCGACTCCGTTAATGCGGGCAGCTGTGATAA
GCTGTTTTACGGAAAGGATAGGATCATCTGCGGCGAACGTAATGATGGAA
GAAACGATTATTCCCTACGTGCAGATTTTGAAAGCTCCAGCTCCTCGAGA
AGTTATGACCGCAGTTGTCAACTTCTGTACGTTCCACTGGAGAGCTGCCC
TTGGCTTATACACCCATATCGCGCATAGTGACCAAAAAGTCAATGGGGCG
ATAGCAGAACTACTGGCCAGGGTAGCAGCGGGGATATCTCCCGAGGCTGC
ACTGTCGGCTTTGAAGGAGTATAGTAGAGGTACATGGGGAGAAGATGGGA
TTAGAGTTATCGAAGCATTGATGGCTAAGAGCAAAGATCAACCTGGAGTG
GTCAGTGCGATAGCACCTTCTCTCGAAAAAAACGTAATAGGGATGGAAAA
GAGCGTCCGATTTGGGAAATTACTCTTTACCATGGTTAAAGAATTTCCTG
TGGTCGAAAACGAGTATGAGCAAGTTCTTGAGTCAGTCGCCGCACGTTCA
AAGGTGTTTCTAGCTAAACGGGCGCTGTCGTACATGAAAAACAAGAAGTA
A
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