Gchil6625.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6625.t1
Unique NameGchil6625.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length645
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:1007261..1009302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010555531.1
PFAMsDUF4110,Kelch_3,Kelch_4,Kelch_5
Max annot lvl35493|Streptophyta
Evalue1.57e-114
EggNOG OGsKOG1230@1|root,KOG1230@2759|Eukaryota,37P82@33090|Viridiplantae,3GE0M@35493|Streptophyta,3HPCZ@3699|Brassicales
DescriptionDomain of unknown function (DUF4110)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6625Gchil6625Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 1007261..1009302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6625.t1Gchil6625.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 1007261..1009302 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6625.t1.start1Gchil6625.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 1007261..1007263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6625.t1.CDS1Gchil6625.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 1007261..1007371 +
Gchil6625.t1.CDS2Gchil6625.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 1007479..1009302 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6625.t1.exon1Gchil6625.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 1007261..1007371 +
Gchil6625.t1.exon2Gchil6625.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 1007479..1009302 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6625.t1.intron1Gchil6625.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 1007372..1007478 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6625.t1.stop1Gchil6625.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 1009300..1009302 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6625.t1 ID=Gchil6625.t1|Name=Gchil6625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=645bp
MGKKGKKKQGIGKAKTEAKAAKKAQKAAKKARETDGEDVEAILAEILAKE
AEAVKVAELQDVEPPSPRASFTLVSNPRDENELIFFGGERFTGDRAEFFS
DLYVYNVQKNIWNRYDSPNRPPPRSSHAVAVHKNMMYIFGGEFSNPSLTQ
YRHYRDLWRLDLEDMSWERIELRGGPSGRSGHRMCVANNRLIVFGGFFDT
GFENKYLNDLYYIDLNRDELKWTKVETSAVDIVPPRRSGFQWVVNGTEVV
LYGGYCKEALKKAKTVSHKGKKKGGAAVEEAMVAQGVMLSDMYKLSAENM
KWSKMKRSGYGPTRRAGFSMVLHKSNAVVFGGVEDDETEENMASIFHNDL
FALNLDKKKWYPMTLRRRKAKKGRRRKGRGNEAEMDEESSSDAGPTADVD
AKMVDINGPKVQDDDDEEKELDTETLEAALISEQVELIPCPRFNAAVAIQ
KNVMYIVGGVVEKEQQEITLDDIWAVDLNKLEEYREVKALSPGCLEWMES
DDDGEEEVDVDNYDDNESRPENVDMEDEEGEEEKQRRRGGRRDRLRARVQ
STENENFTPRINESLKDFFERTKSYWIGEVHEALGESGKVLRRIAFEWAF
RRYWEIKPTLKELEEIEAQIAREEVLEKEFQKVQLEQKRVRGRR*
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spliced messenger RNA

>Gchil6625.t1 ID=Gchil6625.t1|Name=Gchil6625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1935bp|location=Sequence derived from alignment at tig00004390_pilon:1007261..1009302+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAAAAAGGGAAAAAAGAAGCAAGGTATTGGAAAAGCTAAGACAGA
AGCAAAGGCAGCGAAGAAAGCTCAGAAGGCAGCGAAGAAAGCCCGTGAAA
CAGATGGCGAAGATGTTGAAGCAATTCTGGCGGAGATTTTAGCTAAAGAA
GCTGAGGCCGTGAAAGTAGCAGAACTTCAAGATGTTGAACCCCCGTCACC
ACGAGCTTCGTTCACGCTTGTGTCGAATCCGCGGGATGAAAATGAACTTA
TTTTTTTCGGTGGGGAGCGATTTACAGGCGACAGGGCCGAGTTTTTCAGT
GACCTGTATGTCTACAATGTCCAGAAGAATATATGGAACAGATACGATTC
CCCCAATAGACCACCACCACGTAGTTCGCATGCTGTGGCTGTTCATAAGA
ACATGATGTATATTTTCGGTGGTGAATTCAGCAATCCAAGTTTGACGCAG
TATCGCCACTACCGTGATCTCTGGCGACTTGATCTCGAGGACATGAGCTG
GGAGCGCATTGAACTCCGTGGTGGTCCTTCTGGGCGTTCTGGACATCGTA
TGTGTGTTGCTAACAACAGGCTGATTGTATTCGGGGGCTTTTTTGATACT
GGCTTCGAGAACAAATATTTGAACGACCTGTACTACATAGACCTTAATCG
CGATGAGCTTAAATGGACAAAGGTTGAAACTAGCGCTGTGGATATCGTTC
CGCCAAGAAGATCGGGCTTTCAATGGGTTGTTAACGGTACTGAAGTGGTT
TTGTACGGAGGATATTGCAAAGAGGCTCTAAAAAAGGCGAAAACCGTTTC
GCACAAAGGCAAAAAGAAAGGTGGTGCTGCCGTTGAAGAAGCCATGGTTG
CTCAGGGGGTAATGCTTTCCGACATGTACAAGCTATCTGCAGAGAACATG
AAATGGTCAAAAATGAAGCGGAGTGGATATGGCCCGACTCGACGTGCGGG
CTTCTCCATGGTTCTCCACAAGTCGAATGCCGTGGTCTTTGGAGGCGTCG
AAGACGATGAAACGGAGGAGAATATGGCGTCCATCTTCCACAATGATCTG
TTCGCGCTGAATCTTGACAAGAAGAAGTGGTACCCCATGACCTTGAGACG
AAGGAAGGCTAAGAAGGGGCGTCGTCGTAAAGGACGTGGCAATGAAGCCG
AAATGGACGAAGAGTCCTCTTCAGATGCAGGCCCCACTGCCGATGTTGAC
GCAAAAATGGTGGACATTAATGGTCCTAAAGTTCAGGATGACGACGACGA
AGAAAAAGAGCTTGATACAGAGACACTTGAAGCGGCTTTAATTTCTGAGC
AAGTGGAATTAATTCCGTGCCCGCGATTCAATGCAGCTGTCGCGATTCAG
AAAAACGTCATGTACATCGTAGGTGGTGTTGTCGAAAAAGAGCAGCAAGA
GATTACCCTAGACGATATTTGGGCTGTCGATCTGAACAAACTAGAAGAGT
ACAGAGAAGTGAAGGCCTTAAGCCCAGGTTGCTTGGAATGGATGGAATCG
GATGATGACGGGGAAGAAGAGGTGGATGTGGATAATTACGACGACAATGA
GTCAAGACCGGAAAACGTGGATATGGAAGACGAGGAAGGGGAGGAGGAAA
AGCAACGACGCAGGGGCGGAAGGCGAGACCGGCTTCGCGCGCGTGTACAG
AGCACGGAGAATGAAAACTTCACGCCGCGAATAAATGAGTCCTTGAAGGA
CTTCTTCGAACGTACTAAATCATACTGGATTGGTGAGGTCCATGAGGCAC
TTGGGGAGAGTGGCAAAGTCTTGCGAAGGATTGCCTTCGAATGGGCCTTT
AGGAGGTACTGGGAGATCAAGCCCACCCTGAAAGAACTTGAGGAAATAGA
AGCACAAATAGCACGCGAGGAAGTTCTGGAGAAGGAATTCCAGAAAGTTC
AGTTAGAGCAAAAAAGGGTTCGAGGCAGGCGCTAA
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protein sequence of Gchil6625.t1

>Gchil6625.t1 ID=Gchil6625.t1|Name=Gchil6625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=645bp
MGKKGKKKQGIGKAKTEAKAAKKAQKAAKKARETDGEDVEAILAEILAKE
AEAVKVAELQDVEPPSPRASFTLVSNPRDENELIFFGGERFTGDRAEFFS
DLYVYNVQKNIWNRYDSPNRPPPRSSHAVAVHKNMMYIFGGEFSNPSLTQ
YRHYRDLWRLDLEDMSWERIELRGGPSGRSGHRMCVANNRLIVFGGFFDT
GFENKYLNDLYYIDLNRDELKWTKVETSAVDIVPPRRSGFQWVVNGTEVV
LYGGYCKEALKKAKTVSHKGKKKGGAAVEEAMVAQGVMLSDMYKLSAENM
KWSKMKRSGYGPTRRAGFSMVLHKSNAVVFGGVEDDETEENMASIFHNDL
FALNLDKKKWYPMTLRRRKAKKGRRRKGRGNEAEMDEESSSDAGPTADVD
AKMVDINGPKVQDDDDEEKELDTETLEAALISEQVELIPCPRFNAAVAIQ
KNVMYIVGGVVEKEQQEITLDDIWAVDLNKLEEYREVKALSPGCLEWMES
DDDGEEEVDVDNYDDNESRPENVDMEDEEGEEEKQRRRGGRRDRLRARVQ
STENENFTPRINESLKDFFERTKSYWIGEVHEALGESGKVLRRIAFEWAF
RRYWEIKPTLKELEEIEAQIAREEVLEKEFQKVQLEQKRVRGRR*
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mRNA from alignment at tig00004390_pilon:1007261..1009302+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6625.t1 ID=Gchil6625.t1|Name=Gchil6625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2042bp|location=Sequence derived from alignment at tig00004390_pilon:1007261..1009302+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGAAAAAGGGAAAAAAGAAGCAAGGTATTGGAAAAGCTAAGACAGA
AGCAAAGGCAGCGAAGAAAGCTCAGAAGGCAGCGAAGAAAGCCCGTGAAA
CAGATGGCGAAGTATGTCATATATTGAATCCATGATCAAAGCCGAAGATA
ATATTGTAAGAAGAGCTTGGCCTTTTTTTCTCAGTGGTTTCTAACATATT
TCTTACGAGTATTTGCAGGATGTTGAAGCAATTCTGGCGGAGATTTTAGC
TAAAGAAGCTGAGGCCGTGAAAGTAGCAGAACTTCAAGATGTTGAACCCC
CGTCACCACGAGCTTCGTTCACGCTTGTGTCGAATCCGCGGGATGAAAAT
GAACTTATTTTTTTCGGTGGGGAGCGATTTACAGGCGACAGGGCCGAGTT
TTTCAGTGACCTGTATGTCTACAATGTCCAGAAGAATATATGGAACAGAT
ACGATTCCCCCAATAGACCACCACCACGTAGTTCGCATGCTGTGGCTGTT
CATAAGAACATGATGTATATTTTCGGTGGTGAATTCAGCAATCCAAGTTT
GACGCAGTATCGCCACTACCGTGATCTCTGGCGACTTGATCTCGAGGACA
TGAGCTGGGAGCGCATTGAACTCCGTGGTGGTCCTTCTGGGCGTTCTGGA
CATCGTATGTGTGTTGCTAACAACAGGCTGATTGTATTCGGGGGCTTTTT
TGATACTGGCTTCGAGAACAAATATTTGAACGACCTGTACTACATAGACC
TTAATCGCGATGAGCTTAAATGGACAAAGGTTGAAACTAGCGCTGTGGAT
ATCGTTCCGCCAAGAAGATCGGGCTTTCAATGGGTTGTTAACGGTACTGA
AGTGGTTTTGTACGGAGGATATTGCAAAGAGGCTCTAAAAAAGGCGAAAA
CCGTTTCGCACAAAGGCAAAAAGAAAGGTGGTGCTGCCGTTGAAGAAGCC
ATGGTTGCTCAGGGGGTAATGCTTTCCGACATGTACAAGCTATCTGCAGA
GAACATGAAATGGTCAAAAATGAAGCGGAGTGGATATGGCCCGACTCGAC
GTGCGGGCTTCTCCATGGTTCTCCACAAGTCGAATGCCGTGGTCTTTGGA
GGCGTCGAAGACGATGAAACGGAGGAGAATATGGCGTCCATCTTCCACAA
TGATCTGTTCGCGCTGAATCTTGACAAGAAGAAGTGGTACCCCATGACCT
TGAGACGAAGGAAGGCTAAGAAGGGGCGTCGTCGTAAAGGACGTGGCAAT
GAAGCCGAAATGGACGAAGAGTCCTCTTCAGATGCAGGCCCCACTGCCGA
TGTTGACGCAAAAATGGTGGACATTAATGGTCCTAAAGTTCAGGATGACG
ACGACGAAGAAAAAGAGCTTGATACAGAGACACTTGAAGCGGCTTTAATT
TCTGAGCAAGTGGAATTAATTCCGTGCCCGCGATTCAATGCAGCTGTCGC
GATTCAGAAAAACGTCATGTACATCGTAGGTGGTGTTGTCGAAAAAGAGC
AGCAAGAGATTACCCTAGACGATATTTGGGCTGTCGATCTGAACAAACTA
GAAGAGTACAGAGAAGTGAAGGCCTTAAGCCCAGGTTGCTTGGAATGGAT
GGAATCGGATGATGACGGGGAAGAAGAGGTGGATGTGGATAATTACGACG
ACAATGAGTCAAGACCGGAAAACGTGGATATGGAAGACGAGGAAGGGGAG
GAGGAAAAGCAACGACGCAGGGGCGGAAGGCGAGACCGGCTTCGCGCGCG
TGTACAGAGCACGGAGAATGAAAACTTCACGCCGCGAATAAATGAGTCCT
TGAAGGACTTCTTCGAACGTACTAAATCATACTGGATTGGTGAGGTCCAT
GAGGCACTTGGGGAGAGTGGCAAAGTCTTGCGAAGGATTGCCTTCGAATG
GGCCTTTAGGAGGTACTGGGAGATCAAGCCCACCCTGAAAGAACTTGAGG
AAATAGAAGCACAAATAGCACGCGAGGAAGTTCTGGAGAAGGAATTCCAG
AAAGTTCAGTTAGAGCAAAAAAGGGTTCGAGGCAGGCGCTAA
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Coding sequence (CDS) from alignment at tig00004390_pilon:1007261..1009302+

>Gchil6625.t1 ID=Gchil6625.t1|Name=Gchil6625.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1935bp|location=Sequence derived from alignment at tig00004390_pilon:1007261..1009302+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGAAAAAGGGAAAAAAGAAGCAAGGTATTGGAAAAGCTAAGACAGA
AGCAAAGGCAGCGAAGAAAGCTCAGAAGGCAGCGAAGAAAGCCCGTGAAA
CAGATGGCGAAGATGTTGAAGCAATTCTGGCGGAGATTTTAGCTAAAGAA
GCTGAGGCCGTGAAAGTAGCAGAACTTCAAGATGTTGAACCCCCGTCACC
ACGAGCTTCGTTCACGCTTGTGTCGAATCCGCGGGATGAAAATGAACTTA
TTTTTTTCGGTGGGGAGCGATTTACAGGCGACAGGGCCGAGTTTTTCAGT
GACCTGTATGTCTACAATGTCCAGAAGAATATATGGAACAGATACGATTC
CCCCAATAGACCACCACCACGTAGTTCGCATGCTGTGGCTGTTCATAAGA
ACATGATGTATATTTTCGGTGGTGAATTCAGCAATCCAAGTTTGACGCAG
TATCGCCACTACCGTGATCTCTGGCGACTTGATCTCGAGGACATGAGCTG
GGAGCGCATTGAACTCCGTGGTGGTCCTTCTGGGCGTTCTGGACATCGTA
TGTGTGTTGCTAACAACAGGCTGATTGTATTCGGGGGCTTTTTTGATACT
GGCTTCGAGAACAAATATTTGAACGACCTGTACTACATAGACCTTAATCG
CGATGAGCTTAAATGGACAAAGGTTGAAACTAGCGCTGTGGATATCGTTC
CGCCAAGAAGATCGGGCTTTCAATGGGTTGTTAACGGTACTGAAGTGGTT
TTGTACGGAGGATATTGCAAAGAGGCTCTAAAAAAGGCGAAAACCGTTTC
GCACAAAGGCAAAAAGAAAGGTGGTGCTGCCGTTGAAGAAGCCATGGTTG
CTCAGGGGGTAATGCTTTCCGACATGTACAAGCTATCTGCAGAGAACATG
AAATGGTCAAAAATGAAGCGGAGTGGATATGGCCCGACTCGACGTGCGGG
CTTCTCCATGGTTCTCCACAAGTCGAATGCCGTGGTCTTTGGAGGCGTCG
AAGACGATGAAACGGAGGAGAATATGGCGTCCATCTTCCACAATGATCTG
TTCGCGCTGAATCTTGACAAGAAGAAGTGGTACCCCATGACCTTGAGACG
AAGGAAGGCTAAGAAGGGGCGTCGTCGTAAAGGACGTGGCAATGAAGCCG
AAATGGACGAAGAGTCCTCTTCAGATGCAGGCCCCACTGCCGATGTTGAC
GCAAAAATGGTGGACATTAATGGTCCTAAAGTTCAGGATGACGACGACGA
AGAAAAAGAGCTTGATACAGAGACACTTGAAGCGGCTTTAATTTCTGAGC
AAGTGGAATTAATTCCGTGCCCGCGATTCAATGCAGCTGTCGCGATTCAG
AAAAACGTCATGTACATCGTAGGTGGTGTTGTCGAAAAAGAGCAGCAAGA
GATTACCCTAGACGATATTTGGGCTGTCGATCTGAACAAACTAGAAGAGT
ACAGAGAAGTGAAGGCCTTAAGCCCAGGTTGCTTGGAATGGATGGAATCG
GATGATGACGGGGAAGAAGAGGTGGATGTGGATAATTACGACGACAATGA
GTCAAGACCGGAAAACGTGGATATGGAAGACGAGGAAGGGGAGGAGGAAA
AGCAACGACGCAGGGGCGGAAGGCGAGACCGGCTTCGCGCGCGTGTACAG
AGCACGGAGAATGAAAACTTCACGCCGCGAATAAATGAGTCCTTGAAGGA
CTTCTTCGAACGTACTAAATCATACTGGATTGGTGAGGTCCATGAGGCAC
TTGGGGAGAGTGGCAAAGTCTTGCGAAGGATTGCCTTCGAATGGGCCTTT
AGGAGGTACTGGGAGATCAAGCCCACCCTGAAAGAACTTGAGGAAATAGA
AGCACAAATAGCACGCGAGGAAGTTCTGGAGAAGGAATTCCAGAAAGTTC
AGTTAGAGCAAAAAAGGGTTCGAGGCAGGCGCTAA
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