Gchil3830.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3830.t1
Unique NameGchil3830.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length498
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:831585..833078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3656.XP_008449507.1
PFAMsMetallophos,PPP5,TPR_1,TPR_11,TPR_8
Max annot lvl35493|Streptophyta
KEGG koko:K04460
KEGG Pathwayko04010,map04010
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005911,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010017,GO:0010019,GO:0010035,GO:0010038,GO:0010380,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0019538,GO:0023052,GO:0030054,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0036211,GO:0042175,GO:0042221,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046686,GO:0046906,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0065007,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071704,GO:0090056,GO:0097159,GO:0098827,GO:0104004,GO:0140096,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1902325
Evalue6.83e-174
EggNOG OGsCOG0639@1|root,KOG0376@2759|Eukaryota,37IEQ@33090|Viridiplantae,3GC8Z@35493|Streptophyta,4JIXH@91835|fabids
EC3.1.3.16
Descriptionserine threonine-protein phosphatase
COG categoryZ
BRITEko00000,ko00001,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3830Gchil3830Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 831585..833078 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3830.t1.stop1Gchil3830.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 831585..831587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3830.t1.CDS1Gchil3830.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 831585..833078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3830.t1.exon1Gchil3830.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 831585..833078 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3830.t1.start1Gchil3830.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 833076..833078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3830.t1Gchil3830.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 831585..833078 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3830.t1 ID=Gchil3830.t1|Name=Gchil3830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp
MSVAVVSEKLDPVNQLKKKANDCFKKNRLHEAEELYTEALKQADFHQADS
KTQAVLLGNRAFTRLKLEQYGYAISDATKALSHDPNYIKAYYRRGSAHFA
LSRYRDAKRDYAIIAQRIPENKDTAAKLKECEKRIKEAAFAKAIESDSLR
VRVCDTIDVASMQVPDSYDGPRISEDGQITEKFVHDLIECFRNQKSLHVK
YATMIVLAAKKLFDQLPNVVELPVTAGNSITVCGDVHGQYYDLTNGVFER
NGLPSAKNPYLFNGDFVDRGSFSVEVILTLLAFKAWCPEAVHLTRGNHES
LSMNRIYGFEGEVKVKYTETIFSLFSETFQSLPLAYILDGSSTSDGRKAF
VVHGGLFSKDGVTIADINALNRKCEPDSGLMAEMLWSDPQDEDGWGPSKR
GIGVAFGPDVTHRFLDLNGLDIVVRSHEMKDAGYEVSANGRLVTIFSAPN
YCDQMGNQGAFIRFKSDMEPSFVQFSAVPHPHVPPMQYASKLLMGSQ*
back to top

spliced messenger RNA

>Gchil3830.t1 ID=Gchil3830.t1|Name=Gchil3830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000010_pilon:831585..833078- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTTGCTGTGGTGAGTGAGAAGCTTGACCCGGTCAACCAACTCAA
GAAGAAGGCCAATGACTGCTTCAAGAAAAATCGCCTCCATGAAGCGGAGG
AGTTGTACACCGAAGCGCTCAAGCAAGCTGATTTTCACCAAGCTGACTCC
AAGACCCAGGCCGTCTTGTTGGGCAATCGTGCCTTCACCCGATTAAAGCT
TGAACAATATGGATACGCCATTTCTGACGCCACCAAAGCCCTTTCACACG
ACCCGAACTACATCAAGGCCTACTATCGGCGCGGCAGCGCTCACTTTGCT
CTCAGCAGGTACAGGGACGCCAAGAGAGACTACGCCATCATTGCCCAGAG
AATTCCGGAGAACAAGGATACCGCTGCAAAACTCAAAGAGTGCGAGAAAA
GAATCAAGGAGGCTGCCTTCGCAAAGGCTATAGAGAGCGACTCGTTGCGC
GTCCGCGTCTGTGATACTATCGATGTTGCCTCCATGCAAGTTCCTGACTC
ATACGATGGCCCTAGAATATCAGAGGACGGTCAGATCACCGAGAAATTTG
TGCACGATCTTATTGAATGTTTCCGAAACCAGAAGAGCTTACACGTCAAG
TACGCCACTATGATCGTGCTTGCTGCTAAGAAATTGTTTGATCAGTTGCC
CAACGTTGTTGAGTTACCAGTCACTGCTGGCAATTCTATCACCGTCTGTG
GCGATGTTCATGGTCAGTACTATGATCTTACAAATGGCGTTTTTGAGCGA
AATGGGCTTCCAAGCGCGAAGAATCCCTACTTGTTCAACGGTGATTTTGT
TGACAGGGGGTCGTTTAGCGTGGAAGTCATTCTCACCCTGCTTGCTTTCA
AGGCTTGGTGTCCTGAGGCCGTACATCTCACACGGGGGAATCACGAGTCG
CTTAGCATGAATCGCATATACGGGTTTGAAGGCGAAGTCAAAGTCAAGTA
TACCGAGACAATATTCAGCTTGTTTTCTGAGACTTTCCAGAGCTTGCCTT
TGGCCTACATTCTTGACGGAAGCAGCACGTCCGATGGAAGAAAGGCTTTT
GTTGTGCATGGTGGACTCTTCTCCAAAGATGGAGTCACTATTGCTGACAT
AAATGCTCTCAACAGAAAATGCGAGCCGGATTCTGGACTCATGGCCGAAA
TGCTGTGGAGTGATCCACAGGATGAAGACGGATGGGGTCCCTCGAAGAGA
GGTATTGGTGTGGCGTTTGGTCCTGACGTCACCCACCGCTTCTTGGATCT
CAATGGTCTCGATATCGTGGTCAGGTCTCATGAAATGAAGGACGCGGGTT
ATGAAGTGTCAGCGAATGGTCGCCTTGTAACAATTTTCTCAGCTCCGAAC
TATTGCGATCAGATGGGTAACCAAGGTGCCTTTATACGGTTCAAATCTGA
TATGGAACCTTCATTTGTTCAATTCAGTGCTGTACCTCATCCTCATGTCC
CACCAATGCAATACGCGTCCAAGCTGCTCATGGGATCTCAGTAA
back to top

protein sequence of Gchil3830.t1

>Gchil3830.t1 ID=Gchil3830.t1|Name=Gchil3830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=498bp
MSVAVVSEKLDPVNQLKKKANDCFKKNRLHEAEELYTEALKQADFHQADS
KTQAVLLGNRAFTRLKLEQYGYAISDATKALSHDPNYIKAYYRRGSAHFA
LSRYRDAKRDYAIIAQRIPENKDTAAKLKECEKRIKEAAFAKAIESDSLR
VRVCDTIDVASMQVPDSYDGPRISEDGQITEKFVHDLIECFRNQKSLHVK
YATMIVLAAKKLFDQLPNVVELPVTAGNSITVCGDVHGQYYDLTNGVFER
NGLPSAKNPYLFNGDFVDRGSFSVEVILTLLAFKAWCPEAVHLTRGNHES
LSMNRIYGFEGEVKVKYTETIFSLFSETFQSLPLAYILDGSSTSDGRKAF
VVHGGLFSKDGVTIADINALNRKCEPDSGLMAEMLWSDPQDEDGWGPSKR
GIGVAFGPDVTHRFLDLNGLDIVVRSHEMKDAGYEVSANGRLVTIFSAPN
YCDQMGNQGAFIRFKSDMEPSFVQFSAVPHPHVPPMQYASKLLMGSQ*
back to top

mRNA from alignment at tig00000010_pilon:831585..833078-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3830.t1 ID=Gchil3830.t1|Name=Gchil3830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000010_pilon:831585..833078- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGTTGCTGTGGTGAGTGAGAAGCTTGACCCGGTCAACCAACTCAA
GAAGAAGGCCAATGACTGCTTCAAGAAAAATCGCCTCCATGAAGCGGAGG
AGTTGTACACCGAAGCGCTCAAGCAAGCTGATTTTCACCAAGCTGACTCC
AAGACCCAGGCCGTCTTGTTGGGCAATCGTGCCTTCACCCGATTAAAGCT
TGAACAATATGGATACGCCATTTCTGACGCCACCAAAGCCCTTTCACACG
ACCCGAACTACATCAAGGCCTACTATCGGCGCGGCAGCGCTCACTTTGCT
CTCAGCAGGTACAGGGACGCCAAGAGAGACTACGCCATCATTGCCCAGAG
AATTCCGGAGAACAAGGATACCGCTGCAAAACTCAAAGAGTGCGAGAAAA
GAATCAAGGAGGCTGCCTTCGCAAAGGCTATAGAGAGCGACTCGTTGCGC
GTCCGCGTCTGTGATACTATCGATGTTGCCTCCATGCAAGTTCCTGACTC
ATACGATGGCCCTAGAATATCAGAGGACGGTCAGATCACCGAGAAATTTG
TGCACGATCTTATTGAATGTTTCCGAAACCAGAAGAGCTTACACGTCAAG
TACGCCACTATGATCGTGCTTGCTGCTAAGAAATTGTTTGATCAGTTGCC
CAACGTTGTTGAGTTACCAGTCACTGCTGGCAATTCTATCACCGTCTGTG
GCGATGTTCATGGTCAGTACTATGATCTTACAAATGGCGTTTTTGAGCGA
AATGGGCTTCCAAGCGCGAAGAATCCCTACTTGTTCAACGGTGATTTTGT
TGACAGGGGGTCGTTTAGCGTGGAAGTCATTCTCACCCTGCTTGCTTTCA
AGGCTTGGTGTCCTGAGGCCGTACATCTCACACGGGGGAATCACGAGTCG
CTTAGCATGAATCGCATATACGGGTTTGAAGGCGAAGTCAAAGTCAAGTA
TACCGAGACAATATTCAGCTTGTTTTCTGAGACTTTCCAGAGCTTGCCTT
TGGCCTACATTCTTGACGGAAGCAGCACGTCCGATGGAAGAAAGGCTTTT
GTTGTGCATGGTGGACTCTTCTCCAAAGATGGAGTCACTATTGCTGACAT
AAATGCTCTCAACAGAAAATGCGAGCCGGATTCTGGACTCATGGCCGAAA
TGCTGTGGAGTGATCCACAGGATGAAGACGGATGGGGTCCCTCGAAGAGA
GGTATTGGTGTGGCGTTTGGTCCTGACGTCACCCACCGCTTCTTGGATCT
CAATGGTCTCGATATCGTGGTCAGGTCTCATGAAATGAAGGACGCGGGTT
ATGAAGTGTCAGCGAATGGTCGCCTTGTAACAATTTTCTCAGCTCCGAAC
TATTGCGATCAGATGGGTAACCAAGGTGCCTTTATACGGTTCAAATCTGA
TATGGAACCTTCATTTGTTCAATTCAGTGCTGTACCTCATCCTCATGTCC
CACCAATGCAATACGCGTCCAAGCTGCTCATGGGATCTCAGTAA
back to top

Coding sequence (CDS) from alignment at tig00000010_pilon:831585..833078-

>Gchil3830.t1 ID=Gchil3830.t1|Name=Gchil3830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1494bp|location=Sequence derived from alignment at tig00000010_pilon:831585..833078- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGTTGCTGTGGTGAGTGAGAAGCTTGACCCGGTCAACCAACTCAA
GAAGAAGGCCAATGACTGCTTCAAGAAAAATCGCCTCCATGAAGCGGAGG
AGTTGTACACCGAAGCGCTCAAGCAAGCTGATTTTCACCAAGCTGACTCC
AAGACCCAGGCCGTCTTGTTGGGCAATCGTGCCTTCACCCGATTAAAGCT
TGAACAATATGGATACGCCATTTCTGACGCCACCAAAGCCCTTTCACACG
ACCCGAACTACATCAAGGCCTACTATCGGCGCGGCAGCGCTCACTTTGCT
CTCAGCAGGTACAGGGACGCCAAGAGAGACTACGCCATCATTGCCCAGAG
AATTCCGGAGAACAAGGATACCGCTGCAAAACTCAAAGAGTGCGAGAAAA
GAATCAAGGAGGCTGCCTTCGCAAAGGCTATAGAGAGCGACTCGTTGCGC
GTCCGCGTCTGTGATACTATCGATGTTGCCTCCATGCAAGTTCCTGACTC
ATACGATGGCCCTAGAATATCAGAGGACGGTCAGATCACCGAGAAATTTG
TGCACGATCTTATTGAATGTTTCCGAAACCAGAAGAGCTTACACGTCAAG
TACGCCACTATGATCGTGCTTGCTGCTAAGAAATTGTTTGATCAGTTGCC
CAACGTTGTTGAGTTACCAGTCACTGCTGGCAATTCTATCACCGTCTGTG
GCGATGTTCATGGTCAGTACTATGATCTTACAAATGGCGTTTTTGAGCGA
AATGGGCTTCCAAGCGCGAAGAATCCCTACTTGTTCAACGGTGATTTTGT
TGACAGGGGGTCGTTTAGCGTGGAAGTCATTCTCACCCTGCTTGCTTTCA
AGGCTTGGTGTCCTGAGGCCGTACATCTCACACGGGGGAATCACGAGTCG
CTTAGCATGAATCGCATATACGGGTTTGAAGGCGAAGTCAAAGTCAAGTA
TACCGAGACAATATTCAGCTTGTTTTCTGAGACTTTCCAGAGCTTGCCTT
TGGCCTACATTCTTGACGGAAGCAGCACGTCCGATGGAAGAAAGGCTTTT
GTTGTGCATGGTGGACTCTTCTCCAAAGATGGAGTCACTATTGCTGACAT
AAATGCTCTCAACAGAAAATGCGAGCCGGATTCTGGACTCATGGCCGAAA
TGCTGTGGAGTGATCCACAGGATGAAGACGGATGGGGTCCCTCGAAGAGA
GGTATTGGTGTGGCGTTTGGTCCTGACGTCACCCACCGCTTCTTGGATCT
CAATGGTCTCGATATCGTGGTCAGGTCTCATGAAATGAAGGACGCGGGTT
ATGAAGTGTCAGCGAATGGTCGCCTTGTAACAATTTTCTCAGCTCCGAAC
TATTGCGATCAGATGGGTAACCAAGGTGCCTTTATACGGTTCAAATCTGA
TATGGAACCTTCATTTGTTCAATTCAGTGCTGTACCTCATCCTCATGTCC
CACCAATGCAATACGCGTCCAAGCTGCTCATGGGATCTCAGTAA
back to top